NP-MRD: Showing NP-Card for Saphenamycin (NP0022073)

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Record Information

Version

2.0

Created at

2021-01-06 07:17:45 UTC

Updated at

2021-07-15 17:38:03 UTC

NP-MRD ID

NP0022073

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Saphenamycin

Provided By

NPAtlas

Description

Saphenamycin is found in Streptomyces and Streptomyces canarius. Saphenamycin was first documented in 1982 (PMID: 7174526). Based on a literature review very few articles have been published on Saphenamycin.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105203D          

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     RDKit          3D

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  8  2  1  0  0  0  0
 30 14  1  0  0  0  0
 30 18  1  0  0  0  0
 28 20  1  0  0  0  0
  1 31  1  0  0  0  0
  1 32  1  0  0  0  0
  1 33  1  0  0  0  0
  3 34  1  0  0  0  0
  4 35  1  0  0  0  0
  5 36  1  0  0  0  0
  7 37  1  0  0  0  0
 12 38  1  6  0  0  0
 13 39  1  0  0  0  0
 13 40  1  0  0  0  0
 13 41  1  0  0  0  0
 15 42  1  0  0  0  0
 16 43  1  0  0  0  0
 17 44  1  0  0  0  0
 24 45  1  0  0  0  0
 25 46  1  0  0  0  0
 26 47  1  0  0  0  0
 27 48  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0022073

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C1=C2N=C3C([H])=C([H])C([H])=C(C3=NC2=C([H])C([H])=C1[H])[C@]([H])(OC(=O)C1=C(O[H])C([H])=C([H])C([H])=C1C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C23H18N2O5/c1-12-6-3-11-18(26)19(12)23(29)30-13(2)14-7-4-9-16-20(14)24-17-10-5-8-15(22(27)28)21(17)25-16/h3-11,13,26H,1-2H3,(H,27,28)/t13-/m1/s1

> <INCHI_KEY>
AXHGAUSFRHOIGV-CYBMUJFWSA-N

> <FORMULA>
C23H18N2O5

> <MOLECULAR_WEIGHT>
402.406

> <EXACT_MASS>
402.121571688

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
42.22398927978842

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-[(1R)-1-(2-hydroxy-6-methylbenzoyloxy)ethyl]phenazine-1-carboxylic acid

> <ALOGPS_LOGP>
4.07

> <JCHEM_LOGP>
5.722219859666668

> <ALOGPS_LOGS>
-4.71

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.85134802127275

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.674733263696666

> <JCHEM_PKA_STRONGEST_BASIC>
-0.9952110758715625

> <JCHEM_POLAR_SURFACE_AREA>
109.61000000000001

> <JCHEM_REFRACTIVITY>
108.4916

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.80e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-[(1R)-1-(2-hydroxy-6-methylbenzoyloxy)ethyl]phenazine-1-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 48 51  0  0  0  0  0  0  0  0999 V2000
   -2.3734   -0.0808    3.2464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7238   -0.2490    2.6690 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7328   -0.1058    3.6339 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0388   -0.3546    3.3339 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3770   -0.7428    2.0877 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3882   -0.8977    1.0686 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7878   -1.2902   -0.1550 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0849   -0.6311    1.4347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9875   -0.8888    0.3890 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3896   -1.3154   -0.6393 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7036   -0.6119    0.7212 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5015   -0.7699    0.0523 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2403   -1.8055    1.0280 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3976    0.4341    0.0995 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1467    1.3822    1.0613 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0050    2.4721    1.1082 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0523    2.5800    0.2233 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2791    1.6135   -0.7355 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3354    1.6721   -1.5690 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5819    0.6692   -2.4675 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7092    0.7387   -3.2864 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5335    1.9130   -3.1712 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2752    2.8623   -2.4044 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6838    1.9935   -3.9619 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0127   -0.2677   -4.1759 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1738   -1.3684   -4.2564 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0622   -1.4333   -3.4498 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7520   -0.4351   -2.5562 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7110   -0.4529   -1.7139 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4223    0.4854   -0.8159 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1973    0.9436    3.6082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3792   -0.6736    4.2582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5508   -0.5326    2.7431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4963    0.2085    4.6389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8098   -0.2561    4.0981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3821   -0.9690    1.7710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3680   -1.4768   -0.9852 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5390   -1.2218   -0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8906   -1.2327    1.6849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5035   -2.3925    1.5586 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8267   -2.4780    0.3693 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6873    1.3359    1.7572 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8489    3.2379    1.8445 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7707    3.4121    0.2271 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5806    1.7150   -3.6608 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8812   -0.2437   -4.8080 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4139   -2.1788   -4.9696 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4155   -2.3129   -3.5359 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 21 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
  8  2  1  0
 30 14  1  0
 30 18  1  0
 28 20  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  7 37  1  0
 12 38  1  6
 13 39  1  0
 13 40  1  0
 13 41  1  0
 15 42  1  0
 16 43  1  0
 17 44  1  0
 24 45  1  0
 25 46  1  0
 26 47  1  0
 27 48  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -2.373  -0.081   3.246  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.724  -0.249   2.669  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.733  -0.106   3.634  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.039  -0.355   3.334  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.377  -0.743   2.088  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.388  -0.898   1.069  0.00  0.00           C+0
HETATM    7  O   UNK     0      -5.788  -1.290  -0.155  0.00  0.00           O+0
HETATM    8  C   UNK     0      -4.085  -0.631   1.435  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.987  -0.889   0.389  0.00  0.00           C+0
HETATM   10  O   UNK     0      -3.390  -1.315  -0.639  0.00  0.00           O+0
HETATM   11  O   UNK     0      -1.704  -0.612   0.721  0.00  0.00           O+0
HETATM   12  C   UNK     0      -0.501  -0.770   0.052  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.240  -1.806   1.028  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.398   0.434   0.100  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.147   1.382   1.061  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.005   2.472   1.108  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.052   2.580   0.223  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.279   1.613  -0.736  0.00  0.00           C+0
HETATM   19  N   UNK     0       3.335   1.672  -1.569  0.00  0.00           N+0
HETATM   20  C   UNK     0       3.582   0.669  -2.467  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.709   0.739  -3.286  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.534   1.913  -3.171  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.275   2.862  -2.404  0.00  0.00           O+0
HETATM   24  O   UNK     0       6.684   1.994  -3.962  0.00  0.00           O+0
HETATM   25  C   UNK     0       5.013  -0.268  -4.176  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.174  -1.368  -4.256  0.00  0.00           C+0
HETATM   27  C   UNK     0       3.062  -1.433  -3.450  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.752  -0.435  -2.556  0.00  0.00           C+0
HETATM   29  N   UNK     0       1.711  -0.453  -1.714  0.00  0.00           N+0
HETATM   30  C   UNK     0       1.422   0.485  -0.816  0.00  0.00           C+0
HETATM   31  H   UNK     0      -2.197   0.944   3.608  0.00  0.00           H+0
HETATM   32  H   UNK     0      -2.379  -0.674   4.258  0.00  0.00           H+0
HETATM   33  H   UNK     0      -1.551  -0.533   2.743  0.00  0.00           H+0
HETATM   34  H   UNK     0      -4.496   0.209   4.639  0.00  0.00           H+0
HETATM   35  H   UNK     0      -6.810  -0.256   4.098  0.00  0.00           H+0
HETATM   36  H   UNK     0      -7.382  -0.969   1.771  0.00  0.00           H+0
HETATM   37  H   UNK     0      -5.368  -1.477  -0.985  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.539  -1.222  -0.894  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.891  -1.233   1.685  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.503  -2.393   1.559  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.827  -2.478   0.369  0.00  0.00           H+0
HETATM   42  H   UNK     0      -0.687   1.336   1.757  0.00  0.00           H+0
HETATM   43  H   UNK     0       0.849   3.238   1.845  0.00  0.00           H+0
HETATM   44  H   UNK     0       2.771   3.412   0.227  0.00  0.00           H+0
HETATM   45  H   UNK     0       7.581   1.715  -3.661  0.00  0.00           H+0
HETATM   46  H   UNK     0       5.881  -0.244  -4.808  0.00  0.00           H+0
HETATM   47  H   UNK     0       4.414  -2.179  -4.970  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.416  -2.313  -3.536  0.00  0.00           H+0
CONECT    1    2   31   32   33                                             
CONECT    2    1    3    8                                                  
CONECT    3    2    4   34                                                  
CONECT    4    3    5   35                                                  
CONECT    5    4    6   36                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6   37                                                       
CONECT    8    6    9    2                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   14   38                                             
CONECT   13   12   39   40   41                                             
CONECT   14   12   15   30                                                  
CONECT   15   14   16   42                                                  
CONECT   16   15   17   43                                                  
CONECT   17   16   18   44                                                  
CONECT   18   17   19   30                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   28                                                  
CONECT   21   20   22   25                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   45                                                       
CONECT   25   21   26   46                                                  
CONECT   26   25   27   47                                                  
CONECT   27   26   28   48                                                  
CONECT   28   27   29   20                                                  
CONECT   29   28   30                                                       
CONECT   30   29   14   18                                                  
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    3                                                            
CONECT   35    4                                                            
CONECT   36    5                                                            
CONECT   37    7                                                            
CONECT   38   12                                                            
CONECT   39   13                                                            
CONECT   40   13                                                            
CONECT   41   13                                                            
CONECT   42   15                                                            
CONECT   43   16                                                            
CONECT   44   17                                                            
CONECT   45   24                                                            
CONECT   46   25                                                            
CONECT   47   26                                                            
CONECT   48   27                                                            
MASTER        0    0    0    0    0    0    0    0   48    0  102    0
END

RDKit          3D

48 51  0  0  0  0  0  0  0  0999 V2000
   -2.3734   -0.0808    3.2464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7238   -0.2490    2.6690 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7328   -0.1058    3.6339 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0388   -0.3546    3.3339 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3770   -0.7428    2.0877 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3882   -0.8977    1.0686 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7878   -1.2902   -0.1550 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0849   -0.6311    1.4347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9875   -0.8888    0.3890 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3896   -1.3154   -0.6393 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7036   -0.6119    0.7212 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5015   -0.7699    0.0523 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2403   -1.8055    1.0280 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3976    0.4341    0.0995 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1467    1.3822    1.0613 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0050    2.4721    1.1082 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0523    2.5800    0.2233 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2791    1.6135   -0.7355 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3354    1.6721   -1.5690 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5819    0.6692   -2.4675 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7092    0.7387   -3.2864 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5335    1.9130   -3.1712 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2752    2.8623   -2.4044 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6838    1.9935   -3.9619 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0127   -0.2677   -4.1759 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1738   -1.3684   -4.2564 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0622   -1.4333   -3.4498 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7520   -0.4351   -2.5562 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7110   -0.4529   -1.7139 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4223    0.4854   -0.8159 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1973    0.9436    3.6082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3792   -0.6736    4.2582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5508   -0.5326    2.7431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4963    0.2085    4.6389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8098   -0.2561    4.0981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3821   -0.9690    1.7710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3680   -1.4768   -0.9852 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5390   -1.2218   -0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8906   -1.2327    1.6849 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5035   -2.3925    1.5586 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8267   -2.4780    0.3693 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6873    1.3359    1.7572 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8489    3.2379    1.8445 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7707    3.4121    0.2271 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5806    1.7150   -3.6608 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8812   -0.2437   -4.8080 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4139   -2.1788   -4.9696 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4155   -2.3129   -3.5359 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 21 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
  8  2  1  0
 30 14  1  0
 30 18  1  0
 28 20  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  7 37  1  0
 12 38  1  6
 13 39  1  0
 13 40  1  0
 13 41  1  0
 15 42  1  0
 16 43  1  0
 17 44  1  0
 24 45  1  0
 25 46  1  0
 26 47  1  0
 27 48  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
6-[(1R)-1-(2-Hydroxy-6-methylbenzoyloxy)ethyl]phenazine-1-carboxylate	Generator

Chemical Formula

C₂₃H₁₈N₂O₅

Average Mass

402.4060 Da

Monoisotopic Mass

402.12157 Da

IUPAC Name

6-[(1R)-1-(2-hydroxy-6-methylbenzoyloxy)ethyl]phenazine-1-carboxylic acid

Traditional Name

6-[(1R)-1-(2-hydroxy-6-methylbenzoyloxy)ethyl]phenazine-1-carboxylic acid

CAS Registry Number

Not Available

SMILES

C[C@@H](OC(=O)C1=C(C)C=CC=C1O)C1=CC=CC2=NC3=C(C=CC=C3N=C12)C(O)=O

InChI Identifier

InChI=1S/C23H18N2O5/c1-12-6-3-11-18(26)19(12)23(29)30-13(2)14-7-4-9-16-20(14)24-17-10-5-8-15(22(27)28)21(17)25-16/h3-11,13,26H,1-2H3,(H,27,28)/t13-/m1/s1

InChI Key

AXHGAUSFRHOIGV-CYBMUJFWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	7174526
Streptomyces canarius	LOTUS Database	35616633

Species Where Detected

Species Name	Source	Reference
Streptomyces canarius MG314-hF8	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.07	ALOGPS
logP	5.72	ChemAxon
logS	-4.7	ALOGPS
pKa (Strongest Acidic)	3.67	ChemAxon
pKa (Strongest Basic)	-1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	109.61 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	108.49 m³·mol⁻¹	ChemAxon
Polarizability	42.22 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA020976

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00018470

Chemspider ID

52085794

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101563230

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kitahara M, Nakamura H, Matsuda Y, Hamada M, Naganawa H, Maeda K, Umezawa H, Iitaka Y: Saphenamycin, a novel antibiotic from a strain of Streptomyces. J Antibiot (Tokyo). 1982 Oct;35(10):1412-4. doi: 10.7164/antibiotics.35.1412. [PubMed:7174526 ]

Showing NP-Card for Saphenamycin (NP0022073)

MOL for NP0022073 (Saphenamycin)

3D MOL for NP0022073 (Saphenamycin)

3D SDF for NP0022073 (Saphenamycin)

3D-SDF for NP0022073 (Saphenamycin)

PDB for NP0022073 (Saphenamycin)

3D PDB for NP0022073 (Saphenamycin)

SMILES for NP0022073 (Saphenamycin)

INCHI for NP0022073 (Saphenamycin)

Structure for NP0022073 (Saphenamycin)

3D Structure for NP0022073 (Saphenamycin)