NP-MRD: Showing NP-Card for Piperazinomycin (NP0022055)

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Record Information

Version

2.0

Created at

2021-01-06 07:16:44 UTC

Updated at

2021-07-15 17:38:01 UTC

NP-MRD ID

NP0022055

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Piperazinomycin

Provided By

NPAtlas

Description

Piperazinomycin is found in Streptomyces abikoensis, Streptomyces olivoreticuli and Streptomyces olivoreticuli subsp. neoenacticus. Piperazinomycin was first documented in 1982 (PMID: 7142020). Based on a literature review very few articles have been published on 13-oxa-4,20-diazatetracyclo[12.2.2.2³,⁶.1⁸,¹²]Henicosa-1(16),8(19),9,11,14,17-hexaen-11-ol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105203D          

 42 45  0  0  0  0            999 V2000
    4.1654    2.5920    0.6049 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4760    1.3851    0.3786 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9469    0.2315    1.0606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2404   -0.9470    0.8213 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1458   -1.0974   -0.0143 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7551    0.0704   -0.6673 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4178    1.2614   -0.4306 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8905    2.5744   -1.0675 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3836    2.3563   -0.7826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2300    1.7833   -1.8038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5966    1.3775   -1.6072 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2237    1.5755   -0.4340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5636    2.2173    0.5952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1819    2.6255    0.3923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4256    0.6476   -0.1178 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7847   -0.7698    0.1840 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7634   -0.6858    1.2923 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4061   -1.0127    0.9738 N   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1367   -2.2923    0.3510 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0118   -2.1856   -0.8427 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0933   -1.3058   -0.9239 N   0  0  1  0  0  0  0  0  0  0  0  0
    1.3630   -2.3585    0.1143 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8102    3.3991    0.1066 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7878    0.3008    1.7047 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6160   -1.8337    1.3654 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0383   -0.0864   -1.5675 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1133    1.5867   -2.8952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9866    0.9690   -2.6265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8083    2.5701    1.5849 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1886    3.1628    1.2933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1405    0.4914   -0.8819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9066    0.8232    0.8600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6680   -1.3818    0.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0740   -1.5203    2.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8509    0.2050    1.9341 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2632   -0.7304    1.6962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4751   -3.0775    1.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3502   -2.0212   -1.7307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4124   -3.2307   -1.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7697   -1.6475   -1.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7264   -2.8669    1.0854 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5313   -3.1548   -0.6053 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
  7  2  1  0  0  0  0
 14  9  1  0  0  0  0
 21 16  1  0  0  0  0
 22  5  1  0  0  0  0
  1 23  1  0  0  0  0
  3 24  1  0  0  0  0
  4 25  1  0  0  0  0
  6 26  1  0  0  0  0
 10 27  1  0  0  0  0
 11 28  1  0  0  0  0
 13 29  1  0  0  0  0
 14 30  1  0  0  0  0
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 16 33  1  1  0  0  0
 17 34  1  0  0  0  0
 17 35  1  0  0  0  0
 18 36  1  0  0  0  0
 19 37  1  1  0  0  0
 20 38  1  0  0  0  0
 20 39  1  0  0  0  0
 21 40  1  0  0  0  0
 22 41  1  0  0  0  0
 22 42  1  0  0  0  0
M  END

     RDKit          3D

 42 45  0  0  0  0  0  0  0  0999 V2000
    4.1654    2.5920    0.6049 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4760    1.3851    0.3786 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9469    0.2315    1.0606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2404   -0.9470    0.8213 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1458   -1.0974   -0.0143 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7551    0.0704   -0.6673 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4178    1.2614   -0.4306 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8905    2.5744   -1.0675 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3836    2.3563   -0.7826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2300    1.7833   -1.8038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5966    1.3775   -1.6072 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2237    1.5755   -0.4340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5636    2.2173    0.5952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1819    2.6255    0.3923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4256    0.6476   -0.1178 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7847   -0.7698    0.1840 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7634   -0.6858    1.2923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4061   -1.0127    0.9738 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1367   -2.2923    0.3510 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0118   -2.1856   -0.8427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0933   -1.3058   -0.9239 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3630   -2.3585    0.1143 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8102    3.3991    0.1066 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7878    0.3008    1.7047 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6160   -1.8337    1.3654 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0383   -0.0864   -1.5675 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1133    1.5867   -2.8952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9866    0.9690   -2.6265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8083    2.5701    1.5849 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1886    3.1628    1.2933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1405    0.4914   -0.8819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9066    0.8232    0.8600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6680   -1.3818    0.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0740   -1.5203    2.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8509    0.2050    1.9341 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2632   -0.7304    1.6962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4751   -3.0775    1.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3502   -2.0212   -1.7307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4124   -3.2307   -1.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7697   -1.6475   -1.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7264   -2.8669    1.0854 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5313   -3.1548   -0.6053 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 12 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 19 22  1  0
  7  2  1  0
 14  9  1  0
 21 16  1  0
 22  5  1  0
  1 23  1  0
  3 24  1  0
  4 25  1  0
  6 26  1  0
 10 27  1  0
 11 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 15 32  1  0
 16 33  1  1
 17 34  1  0
 17 35  1  0
 18 36  1  0
 19 37  1  1
 20 38  1  0
 20 39  1  0
 21 40  1  0
 22 41  1  0
 22 42  1  0
M  END


  Mrv1652306242105203D          

 42 45  0  0  0  0            999 V2000
    4.1654    2.5920    0.6049 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4760    1.3851    0.3786 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9469    0.2315    1.0606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2404   -0.9470    0.8213 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1458   -1.0974   -0.0143 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7551    0.0704   -0.6673 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4178    1.2614   -0.4306 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8905    2.5744   -1.0675 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3836    2.3563   -0.7826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2300    1.7833   -1.8038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5966    1.3775   -1.6072 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2237    1.5755   -0.4340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5636    2.2173    0.5952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1819    2.6255    0.3923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4256    0.6476   -0.1178 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7847   -0.7698    0.1840 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7634   -0.6858    1.2923 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4061   -1.0127    0.9738 N   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1367   -2.2923    0.3510 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0118   -2.1856   -0.8427 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0933   -1.3058   -0.9239 N   0  0  1  0  0  0  0  0  0  0  0  0
    1.3630   -2.3585    0.1143 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8102    3.3991    0.1066 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7878    0.3008    1.7047 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6160   -1.8337    1.3654 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0383   -0.0864   -1.5675 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1133    1.5867   -2.8952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9866    0.9690   -2.6265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8083    2.5701    1.5849 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1886    3.1628    1.2933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1405    0.4914   -0.8819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9066    0.8232    0.8600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6680   -1.3818    0.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0740   -1.5203    2.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8509    0.2050    1.9341 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2632   -0.7304    1.6962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4751   -3.0775    1.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3502   -2.0212   -1.7307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4124   -3.2307   -1.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7697   -1.6475   -1.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7264   -2.8669    1.0854 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5313   -3.1548   -0.6053 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
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 13 14  2  0  0  0  0
 12 15  1  0  0  0  0
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 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
  7  2  1  0  0  0  0
 14  9  1  0  0  0  0
 21 16  1  0  0  0  0
 22  5  1  0  0  0  0
  1 23  1  0  0  0  0
  3 24  1  0  0  0  0
  4 25  1  0  0  0  0
  6 26  1  0  0  0  0
 10 27  1  0  0  0  0
 11 28  1  0  0  0  0
 13 29  1  0  0  0  0
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 15 32  1  0  0  0  0
 16 33  1  1  0  0  0
 17 34  1  0  0  0  0
 17 35  1  0  0  0  0
 18 36  1  0  0  0  0
 19 37  1  1  0  0  0
 20 38  1  0  0  0  0
 20 39  1  0  0  0  0
 21 40  1  0  0  0  0
 22 41  1  0  0  0  0
 22 42  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0022055

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C2C([H])=C1OC1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])[C@@]1([H])N([H])C([H])([H])[C@]([H])(N([H])C1([H])[H])C2([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C18H20N2O2/c21-17-6-3-13-8-15-11-19-14(10-20-15)7-12-1-4-16(5-2-12)22-18(17)9-13/h1-6,9,14-15,19-21H,7-8,10-11H2/t14-,15-/m1/s1

> <INCHI_KEY>
UOLONRFQMXQQFB-UHFFFAOYSA-N

> <FORMULA>
C18H20N2O2

> <MOLECULAR_WEIGHT>
296.37

> <EXACT_MASS>
296.152477892

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
31.34419842192988

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,6R)-13-oxa-4,20-diazatetracyclo[12.2.2.2^{3,6}.1^{8,12}]henicosa-1(16),8,10,12(19),14,17-hexaen-11-ol

> <ALOGPS_LOGP>
1.52

> <JCHEM_LOGP>
1.7175794759788348

> <ALOGPS_LOGS>
-3.56

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.571716814046711

> <JCHEM_PKA_STRONGEST_BASIC>
9.597816699446401

> <JCHEM_POLAR_SURFACE_AREA>
53.52

> <JCHEM_REFRACTIVITY>
85.68809999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.10e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,6R)-13-oxa-4,20-diazatetracyclo[12.2.2.2^{3,6}.1^{8,12}]henicosa-1(16),8,10,12(19),14,17-hexaen-11-ol

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 42 45  0  0  0  0  0  0  0  0999 V2000
    4.1654    2.5920    0.6049 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4760    1.3851    0.3786 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9469    0.2315    1.0606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2404   -0.9470    0.8213 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1458   -1.0974   -0.0143 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7551    0.0704   -0.6673 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4178    1.2614   -0.4306 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8905    2.5744   -1.0675 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3836    2.3563   -0.7826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2300    1.7833   -1.8038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5966    1.3775   -1.6072 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2237    1.5755   -0.4340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5636    2.2173    0.5952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1819    2.6255    0.3923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4256    0.6476   -0.1178 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7847   -0.7698    0.1840 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7634   -0.6858    1.2923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4061   -1.0127    0.9738 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1367   -2.2923    0.3510 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0118   -2.1856   -0.8427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0933   -1.3058   -0.9239 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3630   -2.3585    0.1143 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8102    3.3991    0.1066 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7878    0.3008    1.7047 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6160   -1.8337    1.3654 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0383   -0.0864   -1.5675 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1133    1.5867   -2.8952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9866    0.9690   -2.6265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8083    2.5701    1.5849 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1886    3.1628    1.2933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1405    0.4914   -0.8819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9066    0.8232    0.8600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6680   -1.3818    0.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0740   -1.5203    2.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8509    0.2050    1.9341 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2632   -0.7304    1.6962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4751   -3.0775    1.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3502   -2.0212   -1.7307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4124   -3.2307   -1.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7697   -1.6475   -1.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7264   -2.8669    1.0854 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5313   -3.1548   -0.6053 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 12 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 19 22  1  0
  7  2  1  0
 14  9  1  0
 21 16  1  0
 22  5  1  0
  1 23  1  0
  3 24  1  0
  4 25  1  0
  6 26  1  0
 10 27  1  0
 11 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 15 32  1  0
 16 33  1  1
 17 34  1  0
 17 35  1  0
 18 36  1  0
 19 37  1  1
 20 38  1  0
 20 39  1  0
 21 40  1  0
 22 41  1  0
 22 42  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  O   UNK     0       4.165   2.592   0.605  0.00  0.00           O+0
HETATM    2  C   UNK     0       3.476   1.385   0.379  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.947   0.232   1.061  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.240  -0.947   0.821  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.146  -1.097  -0.014  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.755   0.070  -0.667  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.418   1.261  -0.431  0.00  0.00           C+0
HETATM    8  O   UNK     0       1.891   2.574  -1.067  0.00  0.00           O+0
HETATM    9  C   UNK     0       0.384   2.356  -0.783  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.230   1.783  -1.804  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.597   1.377  -1.607  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.224   1.575  -0.434  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.564   2.217   0.595  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.182   2.626   0.392  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.426   0.648  -0.118  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.785  -0.770   0.184  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.763  -0.686   1.292  0.00  0.00           C+0
HETATM   18  N   UNK     0      -0.406  -1.013   0.974  0.00  0.00           N+0
HETATM   19  C   UNK     0      -0.137  -2.292   0.351  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.012  -2.186  -0.843  0.00  0.00           C+0
HETATM   21  N   UNK     0      -2.093  -1.306  -0.924  0.00  0.00           N+0
HETATM   22  C   UNK     0       1.363  -2.358   0.114  0.00  0.00           C+0
HETATM   23  H   UNK     0       3.810   3.399   0.107  0.00  0.00           H+0
HETATM   24  H   UNK     0       4.788   0.301   1.705  0.00  0.00           H+0
HETATM   25  H   UNK     0       3.616  -1.834   1.365  0.00  0.00           H+0
HETATM   26  H   UNK     0       1.038  -0.086  -1.567  0.00  0.00           H+0
HETATM   27  H   UNK     0       0.113   1.587  -2.895  0.00  0.00           H+0
HETATM   28  H   UNK     0      -1.987   0.969  -2.627  0.00  0.00           H+0
HETATM   29  H   UNK     0      -1.808   2.570   1.585  0.00  0.00           H+0
HETATM   30  H   UNK     0       0.189   3.163   1.293  0.00  0.00           H+0
HETATM   31  H   UNK     0      -4.141   0.491  -0.882  0.00  0.00           H+0
HETATM   32  H   UNK     0      -3.907   0.823   0.860  0.00  0.00           H+0
HETATM   33  H   UNK     0      -3.668  -1.382   0.408  0.00  0.00           H+0
HETATM   34  H   UNK     0      -2.074  -1.520   2.005  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.851   0.205   1.934  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.263  -0.730   1.696  0.00  0.00           H+0
HETATM   37  H   UNK     0      -0.475  -3.078   1.020  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.350  -2.021  -1.731  0.00  0.00           H+0
HETATM   39  H   UNK     0      -1.412  -3.231  -1.027  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.770  -1.648  -1.623  0.00  0.00           H+0
HETATM   41  H   UNK     0       1.726  -2.867   1.085  0.00  0.00           H+0
HETATM   42  H   UNK     0       1.531  -3.155  -0.605  0.00  0.00           H+0
CONECT    1    2   23                                                       
CONECT    2    1    3    7                                                  
CONECT    3    2    4   24                                                  
CONECT    4    3    5   25                                                  
CONECT    5    4    6   22                                                  
CONECT    6    5    7   26                                                  
CONECT    7    6    8    2                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11   27                                                  
CONECT   11   10   12   28                                                  
CONECT   12   11   13   15                                                  
CONECT   13   12   14   29                                                  
CONECT   14   13    9   30                                                  
CONECT   15   12   16   31   32                                             
CONECT   16   15   17   21   33                                             
CONECT   17   16   18   34   35                                             
CONECT   18   17   19   36                                                  
CONECT   19   18   20   22   37                                             
CONECT   20   19   21   38   39                                             
CONECT   21   20   16   40                                                  
CONECT   22   19    5   41   42                                             
CONECT   23    1                                                            
CONECT   24    3                                                            
CONECT   25    4                                                            
CONECT   26    6                                                            
CONECT   27   10                                                            
CONECT   28   11                                                            
CONECT   29   13                                                            
CONECT   30   14                                                            
CONECT   31   15                                                            
CONECT   32   15                                                            
CONECT   33   16                                                            
CONECT   34   17                                                            
CONECT   35   17                                                            
CONECT   36   18                                                            
CONECT   37   19                                                            
CONECT   38   20                                                            
CONECT   39   20                                                            
CONECT   40   21                                                            
CONECT   41   22                                                            
CONECT   42   22                                                            
MASTER        0    0    0    0    0    0    0    0   42    0   90    0
END

RDKit          3D

42 45  0  0  0  0  0  0  0  0999 V2000
    4.1654    2.5920    0.6049 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4760    1.3851    0.3786 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9469    0.2315    1.0606 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2404   -0.9470    0.8213 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1458   -1.0974   -0.0143 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7551    0.0704   -0.6673 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4178    1.2614   -0.4306 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8905    2.5744   -1.0675 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3836    2.3563   -0.7826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2300    1.7833   -1.8038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5966    1.3775   -1.6072 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2237    1.5755   -0.4340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5636    2.2173    0.5952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1819    2.6255    0.3923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4256    0.6476   -0.1178 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7847   -0.7698    0.1840 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7634   -0.6858    1.2923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4061   -1.0127    0.9738 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1367   -2.2923    0.3510 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0118   -2.1856   -0.8427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0933   -1.3058   -0.9239 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3630   -2.3585    0.1143 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8102    3.3991    0.1066 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7878    0.3008    1.7047 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6160   -1.8337    1.3654 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0383   -0.0864   -1.5675 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1133    1.5867   -2.8952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9866    0.9690   -2.6265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8083    2.5701    1.5849 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1886    3.1628    1.2933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1405    0.4914   -0.8819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9066    0.8232    0.8600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6680   -1.3818    0.4075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0740   -1.5203    2.0046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8509    0.2050    1.9341 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2632   -0.7304    1.6962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4751   -3.0775    1.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3502   -2.0212   -1.7307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4124   -3.2307   -1.0271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7697   -1.6475   -1.6233 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7264   -2.8669    1.0854 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5313   -3.1548   -0.6053 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 12 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 19 22  1  0
  7  2  1  0
 14  9  1  0
 21 16  1  0
 22  5  1  0
  1 23  1  0
  3 24  1  0
  4 25  1  0
  6 26  1  0
 10 27  1  0
 11 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 15 32  1  0
 16 33  1  1
 17 34  1  0
 17 35  1  0
 18 36  1  0
 19 37  1  1
 20 38  1  0
 20 39  1  0
 21 40  1  0
 22 41  1  0
 22 42  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₁₈H₂₀N₂O₂

Average Mass

296.3700 Da

Monoisotopic Mass

296.15248 Da

IUPAC Name

(3R,6R)-13-oxa-4,20-diazatetracyclo[12.2.2.2^{3,6}.1^{8,12}]henicosa-1(16),8,10,12(19),14,17-hexaen-11-ol

Traditional Name

(3R,6R)-13-oxa-4,20-diazatetracyclo[12.2.2.2^{3,6}.1^{8,12}]henicosa-1(16),8,10,12(19),14,17-hexaen-11-ol

CAS Registry Number

Not Available

SMILES

OC1=C2OC3=CC=C(CC4CNC(CN4)CC(C=C1)=C2)C=C3

InChI Identifier

InChI=1S/C18H20N2O2/c21-17-6-3-13-8-15-11-19-14(10-20-15)7-12-1-4-16(5-2-12)22-18(17)9-13/h1-6,9,14-15,19-21H,7-8,10-11H2

InChI Key

UOLONRFQMXQQFB-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces abikoensis	LOTUS Database	35616633
Streptomyces olivoreticuli	NPAtlas	7142020
Streptomyces olivoreticuli subsp. neoenacticus	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.52	ALOGPS
logP	1.72	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	8.57	ChemAxon
pKa (Strongest Basic)	9.6	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	53.52 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	85.69 m³·mol⁻¹	ChemAxon
Polarizability	31.34 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA020989

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4423384

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5257897

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kaneda M, Tamai S, Nakamura S, Hirata T, Kushi Y, Suga T: Piperazinomycin, a new antifungal antibiotic. II. Structure determination by X-ray crystallography. J Antibiot (Tokyo). 1982 Sep;35(9):1137-40. doi: 10.7164/antibiotics.35.1137. [PubMed:7142020 ]

Showing NP-Card for Piperazinomycin (NP0022055)

MOL for NP0022055 (Piperazinomycin)

3D MOL for NP0022055 (Piperazinomycin)

3D SDF for NP0022055 (Piperazinomycin)

3D-SDF for NP0022055 (Piperazinomycin)

PDB for NP0022055 (Piperazinomycin)

3D PDB for NP0022055 (Piperazinomycin)

SMILES for NP0022055 (Piperazinomycin)

INCHI for NP0022055 (Piperazinomycin)

Structure for NP0022055 (Piperazinomycin)

3D Structure for NP0022055 (Piperazinomycin)