NP-MRD: Showing NP-Card for Senacarcin A (NP0022041)

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Record Information

Version

2.0

Created at

2021-01-06 07:16:00 UTC

Updated at

2021-07-15 17:37:58 UTC

NP-MRD ID

NP0022041

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Senacarcin A

Provided By

NPAtlas

Description

Senacarcin A is found in Streptomyces and Streptomyces aureus. Senacarcin A was first documented in 1982 (PMID: 7118728). Based on a literature review very few articles have been published on 6-({[(2S)-2-(dimethylamino)-3-hydroxypropanoyl]oxy}methyl)-N-(2-hydroxy-5-oxocyclopent-1-en-1-yl)-9-methoxyphenazine-1-carboximidic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105203D          

 62 65  0  0  0  0            999 V2000
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   -5.9420    0.6967    1.8987 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652306242105203D          

 62 65  0  0  0  0            999 V2000
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    3.6878    0.8166   -3.1666 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2591    0.6675   -1.8749 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.8460    1.4313    0.2879 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5380    0.4623   -0.9405 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.6062    0.5845    0.0208 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.6738    0.4550    0.9990 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.9244    1.6008    1.6532 C   0  0  1  0  0  0  0  0  0  0  0  0
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    5.5274    1.2695    2.1223 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9741    0.3225   -1.5040 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6217    0.1932   -0.2039 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3585   -0.1453    0.1321 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4572    0.1239    4.4789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3166    0.3903    4.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4162   -1.2515    4.0805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5434   -0.7205    2.8533 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8641   -0.0392   -2.2541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3897   -1.7935   -2.2308 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.9240   -0.4194   -1.8820 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7064    0.0837   -4.6296 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0107    0.6997   -5.2074 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6985    1.0872   -3.4420 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7966    0.0034   -1.8653 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4003    0.2189   -2.1496 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5760   -0.4333    1.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7148    0.6963    0.7676 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0146    1.6322    2.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1830    2.5175    1.1270 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
  6 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
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 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 23 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 36  3  1  0  0  0  0
 36 17  1  0  0  0  0
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 32 27  1  0  0  0  0
  1 37  1  0  0  0  0
  1 38  1  0  0  0  0
  1 39  1  0  0  0  0
  4 40  1  0  0  0  0
  5 41  1  0  0  0  0
  7 42  1  0  0  0  0
  7 43  1  0  0  0  0
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 12 46  1  0  0  0  0
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 15 48  1  0  0  0  0
 15 49  1  0  0  0  0
 15 50  1  0  0  0  0
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 16 52  1  0  0  0  0
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 20 54  1  0  0  0  0
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 26 57  1  0  0  0  0
 29 58  1  0  0  0  0
 30 59  1  0  0  0  0
 30 60  1  0  0  0  0
 31 61  1  0  0  0  0
 31 62  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0022041

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(N([H])C(=O)C2=C3N=C4C(OC([H])([H])[H])=C([H])C([H])=C(C4=NC3=C([H])C([H])=C2[H])C([H])([H])OC(=O)[C@@]([H])(N(C([H])([H])[H])C([H])([H])[H])C([H])([H])O[H])C(=O)C([H])([H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C25H26N4O7/c1-29(2)16(11-30)25(34)36-12-13-7-10-19(35-3)23-20(13)26-15-6-4-5-14(21(15)27-23)24(33)28-22-17(31)8-9-18(22)32/h4-7,10,16,30-31H,8-9,11-12H2,1-3H3,(H,28,33)/t16-/m0/s1

> <INCHI_KEY>
BIVSRYXMBIOALO-INIZCTEOSA-N

> <FORMULA>
C25H26N4O7

> <MOLECULAR_WEIGHT>
494.504

> <EXACT_MASS>
494.180149193

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
62

> <JCHEM_AVERAGE_POLARIZABILITY>
51.9199707937662

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{6-[(2-hydroxy-5-oxocyclopent-1-en-1-yl)carbamoyl]-4-methoxyphenazin-1-yl}methyl (2S)-2-(dimethylamino)-3-hydroxypropanoate

> <ALOGPS_LOGP>
1.53

> <JCHEM_LOGP>
0.7483442826666669

> <ALOGPS_LOGS>
-3.56

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.66032208050159

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.584440231355378

> <JCHEM_PKA_STRONGEST_BASIC>
6.383759332416546

> <JCHEM_POLAR_SURFACE_AREA>
151.18

> <JCHEM_REFRACTIVITY>
129.52099999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.35e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
{6-[(2-hydroxy-5-oxocyclopent-1-en-1-yl)carbamoyl]-4-methoxyphenazin-1-yl}methyl (2S)-2-(dimethylamino)-3-hydroxypropanoate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 62 65  0  0  0  0  0  0  0  0999 V2000
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    3.2591    0.6675   -1.8749 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2158    0.8837   -0.7711 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.6062    0.5845    0.0208 C   0  0  0  0  0  0  0  0  0  0  0  0
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    7.9244    1.6008    1.6532 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3585   -0.1453    0.1321 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.9240   -0.4194   -1.8820 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.7833   -2.8374   -0.9579 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.7966    0.0034   -1.8653 H   0  0  0  0  0  0  0  0  0  0  0  0
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    8.5760   -0.4333    1.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7148    0.6963    0.7676 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0146    1.6322    2.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1830    2.5175    1.1270 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 14 16  1  0
  6 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  2  0
 23 34  2  0
 34 35  1  0
 35 36  2  0
 36  3  1  0
 36 17  1  0
 34 19  1  0
 32 27  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  4 40  1  0
  5 41  1  0
  7 42  1  0
  7 43  1  0
 11 44  1  1
 12 45  1  0
 12 46  1  0
 13 47  1  0
 15 48  1  0
 15 49  1  0
 15 50  1  0
 16 51  1  0
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 20 54  1  0
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 22 56  1  0
 26 57  1  0
 29 58  1  0
 30 59  1  0
 30 60  1  0
 31 61  1  0
 31 62  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       0.608  -0.188   3.808  0.00  0.00           C+0
HETATM    2  O   UNK     0       0.996  -0.047   2.462  0.00  0.00           O+0
HETATM    3  C   UNK     0       0.033  -0.269   1.478  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.259  -0.616   1.806  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.194  -0.830   0.780  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.841  -0.699  -0.533  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.793  -0.955  -1.615  0.00  0.00           C+0
HETATM    8  O   UNK     0      -4.070  -1.231  -1.120  0.00  0.00           O+0
HETATM    9  C   UNK     0      -4.829  -0.316  -0.414  0.00  0.00           C+0
HETATM   10  O   UNK     0      -4.348   0.829  -0.218  0.00  0.00           O+0
HETATM   11  C   UNK     0      -6.162  -0.745   0.067  0.00  0.00           C+0
HETATM   12  C   UNK     0      -6.945  -1.228  -1.119  0.00  0.00           C+0
HETATM   13  O   UNK     0      -6.216  -2.306  -1.666  0.00  0.00           O+0
HETATM   14  N   UNK     0      -6.781   0.366   0.746  0.00  0.00           N+0
HETATM   15  C   UNK     0      -5.942   0.697   1.899  0.00  0.00           C+0
HETATM   16  C   UNK     0      -8.107   0.001   1.216  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.542  -0.350  -0.885  0.00  0.00           C+0
HETATM   18  N   UNK     0      -0.194  -0.222  -2.193  0.00  0.00           N+0
HETATM   19  C   UNK     0       1.059   0.114  -2.518  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.455   0.256  -3.854  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.751   0.602  -4.169  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.688   0.817  -3.167  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.259   0.668  -1.875  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.216   0.884  -0.771  0.00  0.00           C+0
HETATM   25  O   UNK     0       3.846   1.431   0.288  0.00  0.00           O+0
HETATM   26  N   UNK     0       5.538   0.462  -0.941  0.00  0.00           N+0
HETATM   27  C   UNK     0       6.606   0.585   0.021  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.843   0.178  -0.179  0.00  0.00           C+0
HETATM   29  O   UNK     0       8.322  -0.445  -1.367  0.00  0.00           O+0
HETATM   30  C   UNK     0       8.674   0.455   0.999  0.00  0.00           C+0
HETATM   31  C   UNK     0       7.924   1.601   1.653  0.00  0.00           C+0
HETATM   32  C   UNK     0       6.506   1.150   1.353  0.00  0.00           C+0
HETATM   33  O   UNK     0       5.527   1.270   2.122  0.00  0.00           O+0
HETATM   34  C   UNK     0       1.974   0.323  -1.504  0.00  0.00           C+0
HETATM   35  N   UNK     0       1.622   0.193  -0.204  0.00  0.00           N+0
HETATM   36  C   UNK     0       0.359  -0.145   0.132  0.00  0.00           C+0
HETATM   37  H   UNK     0       1.457   0.124   4.479  0.00  0.00           H+0
HETATM   38  H   UNK     0      -0.317   0.390   4.060  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.416  -1.252   4.080  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.543  -0.721   2.853  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.169  -1.117   1.145  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.864  -0.039  -2.254  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.390  -1.794  -2.231  0.00  0.00           H+0
HETATM   44  H   UNK     0      -6.065  -1.558   0.845  0.00  0.00           H+0
HETATM   45  H   UNK     0      -6.924  -0.419  -1.882  0.00  0.00           H+0
HETATM   46  H   UNK     0      -7.944  -1.596  -0.880  0.00  0.00           H+0
HETATM   47  H   UNK     0      -5.783  -2.837  -0.958  0.00  0.00           H+0
HETATM   48  H   UNK     0      -5.215  -0.100   2.140  0.00  0.00           H+0
HETATM   49  H   UNK     0      -5.370   1.631   1.721  0.00  0.00           H+0
HETATM   50  H   UNK     0      -6.609   0.803   2.804  0.00  0.00           H+0
HETATM   51  H   UNK     0      -8.034  -0.931   1.845  0.00  0.00           H+0
HETATM   52  H   UNK     0      -8.521   0.776   1.883  0.00  0.00           H+0
HETATM   53  H   UNK     0      -8.808  -0.153   0.385  0.00  0.00           H+0
HETATM   54  H   UNK     0       0.706   0.084  -4.630  0.00  0.00           H+0
HETATM   55  H   UNK     0       3.011   0.700  -5.207  0.00  0.00           H+0
HETATM   56  H   UNK     0       4.699   1.087  -3.442  0.00  0.00           H+0
HETATM   57  H   UNK     0       5.797   0.003  -1.865  0.00  0.00           H+0
HETATM   58  H   UNK     0       8.400   0.219  -2.150  0.00  0.00           H+0
HETATM   59  H   UNK     0       8.576  -0.433   1.680  0.00  0.00           H+0
HETATM   60  H   UNK     0       9.715   0.696   0.768  0.00  0.00           H+0
HETATM   61  H   UNK     0       8.015   1.632   2.738  0.00  0.00           H+0
HETATM   62  H   UNK     0       8.183   2.518   1.127  0.00  0.00           H+0
CONECT    1    2   37   38   39                                             
CONECT    2    1    3                                                       
CONECT    3    2    4   36                                                  
CONECT    4    3    5   40                                                  
CONECT    5    4    6   41                                                  
CONECT    6    5    7   17                                                  
CONECT    7    6    8   42   43                                             
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   14   44                                             
CONECT   12   11   13   45   46                                             
CONECT   13   12   47                                                       
CONECT   14   11   15   16                                                  
CONECT   15   14   48   49   50                                             
CONECT   16   14   51   52   53                                             
CONECT   17    6   18   36                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   34                                                  
CONECT   20   19   21   54                                                  
CONECT   21   20   22   55                                                  
CONECT   22   21   23   56                                                  
CONECT   23   22   24   34                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   57                                                  
CONECT   27   26   28   32                                                  
CONECT   28   27   29   30                                                  
CONECT   29   28   58                                                       
CONECT   30   28   31   59   60                                             
CONECT   31   30   32   61   62                                             
CONECT   32   31   33   27                                                  
CONECT   33   32                                                            
CONECT   34   23   35   19                                                  
CONECT   35   34   36                                                       
CONECT   36   35    3   17                                                  
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    1                                                            
CONECT   40    4                                                            
CONECT   41    5                                                            
CONECT   42    7                                                            
CONECT   43    7                                                            
CONECT   44   11                                                            
CONECT   45   12                                                            
CONECT   46   12                                                            
CONECT   47   13                                                            
CONECT   48   15                                                            
CONECT   49   15                                                            
CONECT   50   15                                                            
CONECT   51   16                                                            
CONECT   52   16                                                            
CONECT   53   16                                                            
CONECT   54   20                                                            
CONECT   55   21                                                            
CONECT   56   22                                                            
CONECT   57   26                                                            
CONECT   58   29                                                            
CONECT   59   30                                                            
CONECT   60   30                                                            
CONECT   61   31                                                            
CONECT   62   31                                                            
MASTER        0    0    0    0    0    0    0    0   62    0  130    0
END

RDKit          3D

62 65  0  0  0  0  0  0  0  0999 V2000
    0.6079   -0.1875    3.8081 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9961   -0.0470    2.4620 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0332   -0.2694    1.4780 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2593   -0.6161    1.8059 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1942   -0.8303    0.7798 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8412   -0.6991   -0.5332 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7927   -0.9549   -1.6154 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0704   -1.2313   -1.1201 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8293   -0.3158   -0.4137 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3479    0.8291   -0.2179 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1623   -0.7454    0.0671 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.9451   -1.2282   -1.1187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2163   -2.3062   -1.6658 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7805    0.3660    0.7458 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9420    0.6967    1.8987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1074    0.0010    1.2157 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5422   -0.3502   -0.8852 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1940   -0.2217   -2.1929 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0587    0.1138   -2.5184 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4552    0.2556   -3.8536 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7513    0.6019   -4.1689 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6878    0.8166   -3.1666 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2591    0.6675   -1.8749 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2158    0.8837   -0.7711 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8460    1.4313    0.2879 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5380    0.4623   -0.9405 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.6062    0.5845    0.0208 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8428    0.1776   -0.1794 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3222   -0.4446   -1.3668 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6738    0.4550    0.9990 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9244    1.6008    1.6532 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5059    1.1504    1.3533 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5274    1.2695    2.1223 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9741    0.3225   -1.5040 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6217    0.1932   -0.2039 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3585   -0.1453    0.1321 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4572    0.1239    4.4789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3166    0.3903    4.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4162   -1.2515    4.0805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5434   -0.7205    2.8533 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1686   -1.1168    1.1453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8641   -0.0392   -2.2541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3897   -1.7935   -2.2308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0653   -1.5581    0.8445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9240   -0.4194   -1.8820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9442   -1.5961   -0.8800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7833   -2.8374   -0.9579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2147   -0.1004    2.1398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3701    1.6307    1.7214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6086    0.8032    2.8038 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0344   -0.9305    1.8453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5206    0.7761    1.8831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8076   -0.1529    0.3846 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7064    0.0837   -4.6296 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0107    0.6997   -5.2074 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6985    1.0872   -3.4420 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7966    0.0034   -1.8653 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4003    0.2189   -2.1496 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5760   -0.4333    1.6798 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7148    0.6963    0.7676 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0146    1.6322    2.7377 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1830    2.5175    1.1270 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 14 16  1  0
  6 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31 32  1  0
 32 33  2  0
 23 34  2  0
 34 35  1  0
 35 36  2  0
 36  3  1  0
 36 17  1  0
 34 19  1  0
 32 27  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  4 40  1  0
  5 41  1  0
  7 42  1  0
  7 43  1  0
 11 44  1  1
 12 45  1  0
 12 46  1  0
 13 47  1  0
 15 48  1  0
 15 49  1  0
 15 50  1  0
 16 51  1  0
 16 52  1  0
 16 53  1  0
 20 54  1  0
 21 55  1  0
 22 56  1  0
 26 57  1  0
 29 58  1  0
 30 59  1  0
 30 60  1  0
 31 61  1  0
 31 62  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
6-({[(2S)-2-(dimethylamino)-3-hydroxypropanoyl]oxy}methyl)-N-(2-hydroxy-5-oxocyclopent-1-en-1-yl)-9-methoxyphenazine-1-carboximidate	Generator

Chemical Formula

C₂₅H₂₆N₄O₇

Average Mass

494.5040 Da

Monoisotopic Mass

494.18015 Da

IUPAC Name

{6-[(2-hydroxy-5-oxocyclopent-1-en-1-yl)carbamoyl]-4-methoxyphenazin-1-yl}methyl (2S)-2-(dimethylamino)-3-hydroxypropanoate

Traditional Name

{6-[(2-hydroxy-5-oxocyclopent-1-en-1-yl)carbamoyl]-4-methoxyphenazin-1-yl}methyl (2S)-2-(dimethylamino)-3-hydroxypropanoate

CAS Registry Number

Not Available

SMILES

COC1=CC=C(COC(=O)[C@H](CO)N(C)C)C2=NC3=CC=CC(C(=O)NC4=C(O)CCC4=O)=C3N=C12

InChI Identifier

InChI=1S/C25H26N4O7/c1-29(2)16(11-30)25(34)36-12-13-7-10-19(35-3)23-20(13)26-15-6-4-5-14(21(15)27-23)24(33)28-22-17(31)8-9-18(22)32/h4-7,10,16,30-31H,8-9,11-12H2,1-3H3,(H,28,33)/t16-/m0/s1

InChI Key

BIVSRYXMBIOALO-INIZCTEOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	7118728
Streptomyces aureus	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.53	ALOGPS
logP	0.75	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	8.58	ChemAxon
pKa (Strongest Basic)	6.38	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	151.18 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	129.52 m³·mol⁻¹	ChemAxon
Polarizability	51.92 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA020998

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78443077

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139589079

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Nakano H, Yoshida M, Shirahata K, Ishii S, Arai Y, Morimoto M, Tomita F: Senacarcin A, a new antitumor antibiotic produced by Streptomyces endus subsp. aureus. J Antibiot (Tokyo). 1982 Jun;35(6):760-2. doi: 10.7164/antibiotics.35.760. [PubMed:7118728 ]

Showing NP-Card for Senacarcin A (NP0022041)

MOL for NP0022041 (Senacarcin A)

3D MOL for NP0022041 (Senacarcin A)

3D SDF for NP0022041 (Senacarcin A)

3D-SDF for NP0022041 (Senacarcin A)

PDB for NP0022041 (Senacarcin A)

3D PDB for NP0022041 (Senacarcin A)

SMILES for NP0022041 (Senacarcin A)

INCHI for NP0022041 (Senacarcin A)

Structure for NP0022041 (Senacarcin A)

3D Structure for NP0022041 (Senacarcin A)