NP-MRD: Showing NP-Card for Cadeguomycin (NP0022014)

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Record Information

Version

2.0

Created at

2021-01-06 07:14:40 UTC

Updated at

2021-07-15 17:37:54 UTC

NP-MRD ID

NP0022014

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Cadeguomycin

Provided By

NPAtlas

Description

Cadeguomycin is found in Streptomyces, Streptomyces hygroscopicus and Streptomyces hygroscopicus IM7912T. Cadeguomycin was first documented in 1982 (PMID: 7076576). Based on a literature review very few articles have been published on 7-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-hydroxy-2-imino-1H,2H,7H-pyrrolo[2,3-d]pyrimidine-5-carboxylic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105203D          

 37 39  0  0  0  0            999 V2000
   -2.7790   -3.2452   -0.2530 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6551   -1.8400   -0.2573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4400   -1.2631   -0.3228 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3777    0.0869   -0.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5281    0.8422   -0.2593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1332    2.1724   -0.2786 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9164    3.3845   -0.2335 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1508    3.3587   -0.1659 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2854    4.6110   -0.2658 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7372    2.1597   -0.3551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3064    0.8946   -0.3810 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0962    0.5405   -0.4584 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3009   -0.7729   -0.8203 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6783   -0.9067   -0.6906 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1108   -2.3391   -0.5226 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5067   -2.3321   -0.4042 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0555   -0.1774    0.5940 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0445    0.7885    0.3526 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7579    0.5745    0.9201 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0317   -0.2079    1.8134 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7588    0.2415   -0.1930 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7839    0.9292   -0.1356 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7872   -1.1178   -0.1939 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2129   -3.8546    0.3685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4609   -3.6988   -0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3405    5.3054    0.4511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0869    3.0490   -0.3891 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6725    1.1801   -1.1414 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2289   -0.4273   -1.5216 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8454   -2.9855   -1.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7061   -2.7416    0.4296 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9002   -1.5608   -0.9149 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3434   -0.8528    1.3985 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7680    1.2619   -0.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9422    1.5905    1.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4821   -1.0794    1.9831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7308   -1.5680   -0.1431 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  6 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
  5 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23  2  1  0  0  0  0
 11  4  1  0  0  0  0
 19 12  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  9 26  1  0  0  0  0
 10 27  1  0  0  0  0
 12 28  1  6  0  0  0
 14 29  1  6  0  0  0
 15 30  1  0  0  0  0
 15 31  1  0  0  0  0
 16 32  1  0  0  0  0
 17 33  1  1  0  0  0
 18 34  1  0  0  0  0
 19 35  1  1  0  0  0
 20 36  1  0  0  0  0
 23 37  1  0  0  0  0
M  END

     RDKit          3D

 37 39  0  0  0  0  0  0  0  0999 V2000
   -2.7790   -3.2452   -0.2530 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6551   -1.8400   -0.2573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4400   -1.2631   -0.3228 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3777    0.0869   -0.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5281    0.8422   -0.2593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1332    2.1724   -0.2786 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9164    3.3845   -0.2335 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1508    3.3587   -0.1659 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2854    4.6110   -0.2658 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7372    2.1597   -0.3551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3064    0.8946   -0.3810 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0962    0.5405   -0.4584 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3009   -0.7729   -0.8203 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6783   -0.9067   -0.6906 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1108   -2.3391   -0.5226 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5067   -2.3321   -0.4042 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0555   -0.1774    0.5940 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0445    0.7885    0.3526 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7579    0.5745    0.9201 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0317   -0.2079    1.8134 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7588    0.2415   -0.1930 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7839    0.9292   -0.1356 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7872   -1.1178   -0.1939 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2129   -3.8546    0.3685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4609   -3.6988   -0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3405    5.3054    0.4511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0869    3.0490   -0.3891 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6725    1.1801   -1.1414 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2289   -0.4273   -1.5216 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8454   -2.9855   -1.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7061   -2.7416    0.4296 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9002   -1.5608   -0.9149 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3434   -0.8528    1.3985 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7680    1.2619   -0.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9422    1.5905    1.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4821   -1.0794    1.9831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7308   -1.5680   -0.1431 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  6 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 14 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
  5 21  1  0
 21 22  2  0
 21 23  1  0
 23  2  1  0
 11  4  1  0
 19 12  1  0
  1 24  1  0
  1 25  1  0
  9 26  1  0
 10 27  1  0
 12 28  1  6
 14 29  1  6
 15 30  1  0
 15 31  1  0
 16 32  1  0
 17 33  1  1
 18 34  1  0
 19 35  1  1
 20 36  1  0
 23 37  1  0
M  END


  Mrv1652306242105203D          

 37 39  0  0  0  0            999 V2000
   -2.7790   -3.2452   -0.2530 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6551   -1.8400   -0.2573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4400   -1.2631   -0.3228 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3777    0.0869   -0.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5281    0.8422   -0.2593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1332    2.1724   -0.2786 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9164    3.3845   -0.2335 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1508    3.3587   -0.1659 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2854    4.6110   -0.2658 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7372    2.1597   -0.3551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3064    0.8946   -0.3810 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0962    0.5405   -0.4584 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3009   -0.7729   -0.8203 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6783   -0.9067   -0.6906 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1108   -2.3391   -0.5226 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5067   -2.3321   -0.4042 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0555   -0.1774    0.5940 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0445    0.7885    0.3526 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7579    0.5745    0.9201 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0317   -0.2079    1.8134 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7588    0.2415   -0.1930 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7839    0.9292   -0.1356 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7872   -1.1178   -0.1939 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2129   -3.8546    0.3685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4609   -3.6988   -0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3405    5.3054    0.4511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0869    3.0490   -0.3891 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6725    1.1801   -1.1414 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2289   -0.4273   -1.5216 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8454   -2.9855   -1.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7061   -2.7416    0.4296 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9002   -1.5608   -0.9149 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3434   -0.8528    1.3985 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7680    1.2619   -0.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9422    1.5905    1.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4821   -1.0794    1.9831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7308   -1.5680   -0.1431 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  6 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
  5 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23  2  1  0  0  0  0
 11  4  1  0  0  0  0
 19 12  1  0  0  0  0
  1 24  1  0  0  0  0
  1 25  1  0  0  0  0
  9 26  1  0  0  0  0
 10 27  1  0  0  0  0
 12 28  1  6  0  0  0
 14 29  1  6  0  0  0
 15 30  1  0  0  0  0
 15 31  1  0  0  0  0
 16 32  1  0  0  0  0
 17 33  1  1  0  0  0
 18 34  1  0  0  0  0
 19 35  1  1  0  0  0
 20 36  1  0  0  0  0
 23 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0022014

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C1=C([H])N(C2=C1C(=O)N([H])C(=N2)N([H])[H])[C@]1([H])O[C@]([H])(C([H])([H])O[H])[C@@]([H])(O[H])[C@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C12H14N4O7/c13-12-14-8-5(9(20)15-12)3(11(21)22)1-16(8)10-7(19)6(18)4(2-17)23-10/h1,4,6-7,10,17-19H,2H2,(H,21,22)(H3,13,14,15,20)/t4-,6-,7+,10-/m1/s1

> <INCHI_KEY>
LVTNUSALLLYISD-UHTZMRCNSA-N

> <FORMULA>
C12H14N4O7

> <MOLECULAR_WEIGHT>
326.265

> <EXACT_MASS>
326.086248807

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
29.818495745177366

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-amino-7-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-oxo-3H,4H,7H-pyrrolo[2,3-d]pyrimidine-5-carboxylic acid

> <ALOGPS_LOGP>
-2.49

> <JCHEM_LOGP>
-2.236131478

> <ALOGPS_LOGS>
-1.42

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
10.992925133002206

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.129653612085168

> <JCHEM_PKA_STRONGEST_BASIC>
1.421674690680975

> <JCHEM_POLAR_SURFACE_AREA>
179.62999999999997

> <JCHEM_REFRACTIVITY>
74.0533

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.23e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-amino-7-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-oxo-3H-pyrrolo[2,3-d]pyrimidine-5-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 37 39  0  0  0  0  0  0  0  0999 V2000
   -2.7790   -3.2452   -0.2530 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6551   -1.8400   -0.2573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4400   -1.2631   -0.3228 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3777    0.0869   -0.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5281    0.8422   -0.2593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1332    2.1724   -0.2786 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9164    3.3845   -0.2335 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1508    3.3587   -0.1659 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2854    4.6110   -0.2658 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7372    2.1597   -0.3551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3064    0.8946   -0.3810 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0962    0.5405   -0.4584 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3009   -0.7729   -0.8203 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6783   -0.9067   -0.6906 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1108   -2.3391   -0.5226 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5067   -2.3321   -0.4042 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0555   -0.1774    0.5940 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0445    0.7885    0.3526 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7579    0.5745    0.9201 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0317   -0.2079    1.8134 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7588    0.2415   -0.1930 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7839    0.9292   -0.1356 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7872   -1.1178   -0.1939 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2129   -3.8546    0.3685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4609   -3.6988   -0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3405    5.3054    0.4511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0869    3.0490   -0.3891 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6725    1.1801   -1.1414 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2289   -0.4273   -1.5216 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8454   -2.9855   -1.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7061   -2.7416    0.4296 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9002   -1.5608   -0.9149 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3434   -0.8528    1.3985 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7680    1.2619   -0.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9422    1.5905    1.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4821   -1.0794    1.9831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7308   -1.5680   -0.1431 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  6 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 14 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
  5 21  1  0
 21 22  2  0
 21 23  1  0
 23  2  1  0
 11  4  1  0
 19 12  1  0
  1 24  1  0
  1 25  1  0
  9 26  1  0
 10 27  1  0
 12 28  1  6
 14 29  1  6
 15 30  1  0
 15 31  1  0
 16 32  1  0
 17 33  1  1
 18 34  1  0
 19 35  1  1
 20 36  1  0
 23 37  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  N   UNK     0      -2.779  -3.245  -0.253  0.00  0.00           N+0
HETATM    2  C   UNK     0      -2.655  -1.840  -0.257  0.00  0.00           C+0
HETATM    3  N   UNK     0      -1.440  -1.263  -0.323  0.00  0.00           N+0
HETATM    4  C   UNK     0      -1.378   0.087  -0.324  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.528   0.842  -0.259  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.133   2.172  -0.279  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.916   3.385  -0.234  0.00  0.00           C+0
HETATM    8  O   UNK     0      -4.151   3.359  -0.166  0.00  0.00           O+0
HETATM    9  O   UNK     0      -2.285   4.611  -0.266  0.00  0.00           O+0
HETATM   10  C   UNK     0      -0.737   2.160  -0.355  0.00  0.00           C+0
HETATM   11  N   UNK     0      -0.306   0.895  -0.381  0.00  0.00           N+0
HETATM   12  C   UNK     0       1.096   0.541  -0.458  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.301  -0.773  -0.820  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.678  -0.907  -0.691  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.111  -2.339  -0.523  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.507  -2.332  -0.404  0.00  0.00           O+0
HETATM   17  C   UNK     0       3.055  -0.177   0.594  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.045   0.789   0.353  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.758   0.575   0.920  0.00  0.00           C+0
HETATM   20  O   UNK     0       1.032  -0.208   1.813  0.00  0.00           O+0
HETATM   21  C   UNK     0      -3.759   0.242  -0.193  0.00  0.00           C+0
HETATM   22  O   UNK     0      -4.784   0.929  -0.136  0.00  0.00           O+0
HETATM   23  N   UNK     0      -3.787  -1.118  -0.194  0.00  0.00           N+0
HETATM   24  H   UNK     0      -2.213  -3.855   0.369  0.00  0.00           H+0
HETATM   25  H   UNK     0      -3.461  -3.699  -0.894  0.00  0.00           H+0
HETATM   26  H   UNK     0      -2.341   5.305   0.451  0.00  0.00           H+0
HETATM   27  H   UNK     0      -0.087   3.049  -0.389  0.00  0.00           H+0
HETATM   28  H   UNK     0       1.673   1.180  -1.141  0.00  0.00           H+0
HETATM   29  H   UNK     0       3.229  -0.427  -1.522  0.00  0.00           H+0
HETATM   30  H   UNK     0       2.845  -2.986  -1.364  0.00  0.00           H+0
HETATM   31  H   UNK     0       2.706  -2.742   0.430  0.00  0.00           H+0
HETATM   32  H   UNK     0       4.900  -1.561  -0.915  0.00  0.00           H+0
HETATM   33  H   UNK     0       3.343  -0.853   1.399  0.00  0.00           H+0
HETATM   34  H   UNK     0       3.768   1.262  -0.479  0.00  0.00           H+0
HETATM   35  H   UNK     0       1.942   1.591   1.267  0.00  0.00           H+0
HETATM   36  H   UNK     0       1.482  -1.079   1.983  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.731  -1.568  -0.143  0.00  0.00           H+0
CONECT    1    2   24   25                                                  
CONECT    2    1    3   23                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   11                                                  
CONECT    5    4    6   21                                                  
CONECT    6    5    7   10                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   26                                                       
CONECT   10    6   11   27                                                  
CONECT   11   10   12    4                                                  
CONECT   12   11   13   19   28                                             
CONECT   13   12   14                                                       
CONECT   14   13   15   17   29                                             
CONECT   15   14   16   30   31                                             
CONECT   16   15   32                                                       
CONECT   17   14   18   19   33                                             
CONECT   18   17   34                                                       
CONECT   19   17   20   12   35                                             
CONECT   20   19   36                                                       
CONECT   21    5   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21    2   37                                                  
CONECT   24    1                                                            
CONECT   25    1                                                            
CONECT   26    9                                                            
CONECT   27   10                                                            
CONECT   28   12                                                            
CONECT   29   14                                                            
CONECT   30   15                                                            
CONECT   31   15                                                            
CONECT   32   16                                                            
CONECT   33   17                                                            
CONECT   34   18                                                            
CONECT   35   19                                                            
CONECT   36   20                                                            
CONECT   37   23                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   78    0
END

RDKit          3D

37 39  0  0  0  0  0  0  0  0999 V2000
   -2.7790   -3.2452   -0.2530 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6551   -1.8400   -0.2573 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4400   -1.2631   -0.3228 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3777    0.0869   -0.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5281    0.8422   -0.2593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1332    2.1724   -0.2786 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9164    3.3845   -0.2335 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1508    3.3587   -0.1659 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2854    4.6110   -0.2658 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7372    2.1597   -0.3551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3064    0.8946   -0.3810 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0962    0.5405   -0.4584 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3009   -0.7729   -0.8203 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6783   -0.9067   -0.6906 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1108   -2.3391   -0.5226 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5067   -2.3321   -0.4042 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0555   -0.1774    0.5940 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0445    0.7885    0.3526 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7579    0.5745    0.9201 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0317   -0.2079    1.8134 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7588    0.2415   -0.1930 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7839    0.9292   -0.1356 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7872   -1.1178   -0.1939 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2129   -3.8546    0.3685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4609   -3.6988   -0.8935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3405    5.3054    0.4511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0869    3.0490   -0.3891 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6725    1.1801   -1.1414 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2289   -0.4273   -1.5216 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8454   -2.9855   -1.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7061   -2.7416    0.4296 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9002   -1.5608   -0.9149 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3434   -0.8528    1.3985 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7680    1.2619   -0.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9422    1.5905    1.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4821   -1.0794    1.9831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7308   -1.5680   -0.1431 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  6 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 14 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
  5 21  1  0
 21 22  2  0
 21 23  1  0
 23  2  1  0
 11  4  1  0
 19 12  1  0
  1 24  1  0
  1 25  1  0
  9 26  1  0
 10 27  1  0
 12 28  1  6
 14 29  1  6
 15 30  1  0
 15 31  1  0
 16 32  1  0
 17 33  1  1
 18 34  1  0
 19 35  1  1
 20 36  1  0
 23 37  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
7-[(2R,3S,4S,5R)-3,4-Dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-hydroxy-2-imino-1H,2H,7H-pyrrolo[2,3-D]pyrimidine-5-carboxylate	Generator

Chemical Formula

C₁₂H₁₄N₄O₇

Average Mass

326.2650 Da

Monoisotopic Mass

326.08625 Da

IUPAC Name

2-amino-7-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-oxo-3H,4H,7H-pyrrolo[2,3-d]pyrimidine-5-carboxylic acid

Traditional Name

2-amino-7-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-4-oxo-3H-pyrrolo[2,3-d]pyrimidine-5-carboxylic acid

CAS Registry Number

Not Available

SMILES

NC1=NC2=C(C(=CN2[C@@H]2O[C@H](CO)[C@@H](O)[C@@H]2O)C(O)=O)C(=O)N1

InChI Identifier

InChI=1S/C12H14N4O7/c13-12-14-8-5(9(20)15-12)3(11(21)22)1-16(8)10-7(19)6(18)4(2-17)23-10/h1,4,6-7,10,17-19H,2H2,(H,21,22)(H3,13,14,15,20)/t4-,6-,7+,10-/m1/s1

InChI Key

LVTNUSALLLYISD-UHTZMRCNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	7076576
Streptomyces hygroscopicus	LOTUS Database	35616633
Streptomyces hygroscopicus IM7912T	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.5	ALOGPS
logP	-2.2	ChemAxon
logS	-1.4	ALOGPS
pKa (Strongest Acidic)	4.13	ChemAxon
pKa (Strongest Basic)	1.42	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	179.63 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	74.05 m³·mol⁻¹	ChemAxon
Polarizability	29.82 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA021005

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78443079

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13218311

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wu RT, Okabe T, Namikoshi M, Okuda S, Nishimura T, Tanaka N: Cadeguomycin, a novel nucleoside analog antibiotic. II. Improved purification, physicochemical properties and structure assessment. J Antibiot (Tokyo). 1982 Mar;35(3):279-84. doi: 10.7164/antibiotics.35.279. [PubMed:7076576 ]

Showing NP-Card for Cadeguomycin (NP0022014)

MOL for NP0022014 (Cadeguomycin)

3D MOL for NP0022014 (Cadeguomycin)

3D SDF for NP0022014 (Cadeguomycin)

3D-SDF for NP0022014 (Cadeguomycin)

PDB for NP0022014 (Cadeguomycin)

3D PDB for NP0022014 (Cadeguomycin)

SMILES for NP0022014 (Cadeguomycin)

INCHI for NP0022014 (Cadeguomycin)

Structure for NP0022014 (Cadeguomycin)

3D Structure for NP0022014 (Cadeguomycin)