NP-MRD: Showing NP-Card for Mycinamicin VII (NP0021964)

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Record Information

Version

2.0

Created at

2021-01-06 07:12:11 UTC

Updated at

2021-07-15 17:37:46 UTC

NP-MRD ID

NP0021964

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Mycinamicin VII

Provided By

NPAtlas

Description

Mycinamicin VII is found in Micromonospora, Micromonospora griseorubida and Micromonospora griseorubida sp. nov..

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042108023D          

 84 85  0  0  0  0            999 V2000
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   -4.4492   -0.8265    2.6298 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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    0.4255    3.1263   -0.1368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6054    1.9647    0.8162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8278    0.6960   -0.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6763    0.4675   -2.2027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1536    3.0733   -1.9043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3959    3.8705   -0.7444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8276    3.8777    0.0497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8918    2.5343    0.4290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3803    1.3885   -3.9954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2118    1.0524   -2.7494 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8306    2.9321   -0.5034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4913    1.5758    1.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9361   -0.7874    0.8870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8348   -2.2503   -0.4241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8449   -1.3170   -1.4845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0672   -1.1971   -2.5940 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 19 21  1  0
 18 22  1  0
 22 23  1  0
 11 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 27 29  1  0
 29 30  2  0
 29 31  1  0
 31 32  2  0
 32 33  1  0
 33 34  2  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 35  3  1  0
 22 13  1  0
  1 38  1  0
  1 39  1  0
  1 40  1  0
  2 41  1  0
  2 42  1  0
  3 43  1  1
  7 44  1  0
  8 45  1  0
  9 46  1  1
 10 47  1  0
 10 48  1  0
 10 49  1  0
 11 50  1  6
 13 51  1  6
 15 52  1  6
 16 53  1  0
 16 54  1  0
 16 55  1  0
 17 56  1  0
 17 57  1  0
 18 58  1  6
 20 59  1  0
 20 60  1  0
 20 61  1  0
 21 62  1  0
 21 63  1  0
 21 64  1  0
 22 65  1  1
 23 66  1  0
 24 67  1  6
 25 68  1  0
 25 69  1  0
 25 70  1  0
 26 71  1  0
 26 72  1  0
 27 73  1  6
 28 74  1  0
 28 75  1  0
 28 76  1  0
 31 77  1  0
 32 78  1  0
 33 79  1  0
 34 80  1  0
 35 81  1  1
 36 82  1  0
 36 83  1  0
 37 84  1  0
M  END


  Mrv1652307042108023D          

 84 85  0  0  0  0            999 V2000
   -3.3580   -1.0826    3.6124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4492   -0.8265    2.6298 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8882   -0.5647    1.2374 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1717   -1.6637    0.8081 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1777   -2.4081    1.3381 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4382   -3.6852    1.4916 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8620   -2.0003    1.7651 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0479   -1.4789    0.9747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1806   -1.2513   -0.4661 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2001   -2.5071   -1.2732 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7245   -0.1391   -0.9355 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7095    0.0431    0.0320 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0052   -0.1169   -0.4173 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7368    1.0790   -0.2912 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7935    0.9570   -1.1859 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7275    2.1438   -0.9772 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5681   -0.2952   -1.0423 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1707   -1.2131    0.0452 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0216   -1.1279    1.2091 N   0  0  2  0  0  0  0  0  0  0  0  0
    5.6123   -2.0073    2.2653 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3626    0.1743    1.6482 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7250   -1.1743    0.3619 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0872   -2.4088    0.1125 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0482    1.1929   -1.0866 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2643    2.0582    0.1357 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4489    1.1057   -1.3114 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0680    2.4418   -1.6199 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5807    3.1735   -0.3861 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0660    2.4556   -2.6969 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7087    3.3001   -3.6461 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2887    1.7901   -2.9412 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3451    1.5349   -2.1824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4926    1.9026   -0.8194 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3506    1.0790    0.1995 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0426   -0.3161    0.2877 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9209   -1.2001   -0.8662 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7839   -1.1029   -1.6460 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7689   -0.8646    4.6418 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0214   -2.1338    3.6784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4998   -0.3659    3.4791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1207   -1.7014    2.6286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0262    0.0539    2.9692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3031    0.3825    1.3391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6022   -2.1492    2.8452 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0107   -1.2074    1.4488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2445   -1.1017   -0.7094 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5736   -3.2851   -0.5730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6751   -2.8935   -1.8235 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0377   -2.2779   -1.9573 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1811   -0.4074   -1.9287 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9689   -0.4068   -1.4837 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3675    1.0202   -2.2316 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7814    1.8368   -1.0100 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4850    2.9288   -1.7270 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5260    2.6070    0.0078 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6644   -0.0681   -0.9449 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4851   -0.8615   -2.0175 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3641   -2.2830   -0.3337 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5320   -2.3163    2.8174 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1804   -2.9337    1.8550 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9174   -1.5106    2.9958 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8896    0.1040    2.6504 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1709    0.5581    0.9642 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5747    0.9203    1.7009 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5161   -0.9569    1.4399 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7881   -3.0434   -0.1490 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4755    1.7560   -1.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    1.7319    0.7380 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4255    3.1263   -0.1368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6054    1.9647    0.8162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8278    0.6960   -0.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6763    0.4675   -2.2027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1536    3.0733   -1.9043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3959    3.8705   -0.7444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8276    3.8777    0.0497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8918    2.5343    0.4290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3803    1.3885   -3.9954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2118    1.0524   -2.7494 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8306    2.9321   -0.5034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4913    1.5758    1.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9361   -0.7874    0.8870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8348   -2.2503   -0.4241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8449   -1.3170   -1.4845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0672   -1.1971   -2.5940 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 18 22  1  0  0  0  0
 22 23  1  0  0  0  0
 11 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 35  3  1  0  0  0  0
 22 13  1  0  0  0  0
  1 38  1  0  0  0  0
  1 39  1  0  0  0  0
  1 40  1  0  0  0  0
  2 41  1  0  0  0  0
  2 42  1  0  0  0  0
  3 43  1  1  0  0  0
  7 44  1  0  0  0  0
  8 45  1  0  0  0  0
  9 46  1  1  0  0  0
 10 47  1  0  0  0  0
 10 48  1  0  0  0  0
 10 49  1  0  0  0  0
 11 50  1  6  0  0  0
 13 51  1  6  0  0  0
 15 52  1  6  0  0  0
 16 53  1  0  0  0  0
 16 54  1  0  0  0  0
 16 55  1  0  0  0  0
 17 56  1  0  0  0  0
 17 57  1  0  0  0  0
 18 58  1  6  0  0  0
 20 59  1  0  0  0  0
 20 60  1  0  0  0  0
 20 61  1  0  0  0  0
 21 62  1  0  0  0  0
 21 63  1  0  0  0  0
 21 64  1  0  0  0  0
 22 65  1  1  0  0  0
 23 66  1  0  0  0  0
 24 67  1  6  0  0  0
 25 68  1  0  0  0  0
 25 69  1  0  0  0  0
 25 70  1  0  0  0  0
 26 71  1  0  0  0  0
 26 72  1  0  0  0  0
 27 73  1  6  0  0  0
 28 74  1  0  0  0  0
 28 75  1  0  0  0  0
 28 76  1  0  0  0  0
 31 77  1  0  0  0  0
 32 78  1  0  0  0  0
 33 79  1  0  0  0  0
 34 80  1  0  0  0  0
 35 81  1  1  0  0  0
 36 82  1  0  0  0  0
 36 83  1  0  0  0  0
 37 84  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021964

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@]1([H])\C([H])=C(\[H])/C(/[H])=C([H])\C(=O)[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@@]([H])(O[C@@]2([H])O[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(N(C([H])([H])[H])C([H])([H])[H])[C@]2([H])O[H])[C@]([H])(\C([H])=C([H])/C(=O)O[C@]1([H])C([H])([H])C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C29H47NO7/c1-8-25-22(17-31)11-9-10-12-24(32)19(3)15-20(4)28(18(2)13-14-26(33)36-25)37-29-27(34)23(30(6)7)16-21(5)35-29/h9-14,18-23,25,27-29,31,34H,8,15-17H2,1-7H3/b11-9-,12-10-,14-13-/t18-,19-,20+,21-,22-,23+,25+,27-,28-,29+/m0/s1

> <INCHI_KEY>
HREUKRQZLNMEFQ-BXNPAKMDSA-N

> <FORMULA>
C29H47NO7

> <MOLECULAR_WEIGHT>
521.695

> <EXACT_MASS>
521.335252857

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
84

> <JCHEM_AVERAGE_POLARIZABILITY>
57.83985784708318

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3Z,5S,6R,7R,9S,11Z,13Z,15S,16R)-6-{[(2R,3S,4R,6S)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-16-ethyl-15-(hydroxymethyl)-5,7,9-trimethyl-1-oxacyclohexadeca-3,11,13-triene-2,10-dione

> <ALOGPS_LOGP>
3.00

> <JCHEM_LOGP>
4.197924847999996

> <ALOGPS_LOGS>
-3.91

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
15.349635596589557

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.830758997985054

> <JCHEM_PKA_STRONGEST_BASIC>
8.380998217105082

> <JCHEM_POLAR_SURFACE_AREA>
105.53000000000002

> <JCHEM_REFRACTIVITY>
146.79449999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.48e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3Z,5S,6R,7R,9S,11Z,13Z,15S,16R)-6-{[(2R,3S,4R,6S)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-16-ethyl-15-(hydroxymethyl)-5,7,9-trimethyl-1-oxacyclohexadeca-3,11,13-triene-2,10-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 84 85  0  0  0  0  0  0  0  0999 V2000
   -3.3580   -1.0826    3.6124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4492   -0.8265    2.6298 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8882   -0.5647    1.2374 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1717   -1.6637    0.8081 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1777   -2.4081    1.3381 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4382   -3.6852    1.4916 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8620   -2.0003    1.7651 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0479   -1.4789    0.9747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1806   -1.2513   -0.4661 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2001   -2.5071   -1.2732 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7245   -0.1391   -0.9355 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7095    0.0431    0.0320 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0052   -0.1169   -0.4173 C   0  0  1  0  0  0  0  0  0  0  0  0
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    5.5681   -0.2952   -1.0423 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1707   -1.2131    0.0452 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0216   -1.1279    1.2091 N   0  0  0  0  0  0  0  0  0  0  0  0
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    6.3626    0.1743    1.6482 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.4489    1.1057   -1.3114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0680    2.4418   -1.6199 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5807    3.1735   -0.3861 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0660    2.4556   -2.6969 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7087    3.3001   -3.6461 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2887    1.7901   -2.9412 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3451    1.5349   -2.1824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4926    1.9026   -0.8194 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3506    1.0790    0.1995 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0426   -0.3161    0.2877 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9209   -1.2001   -0.8662 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7839   -1.1029   -1.6460 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7689   -0.8646    4.6418 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0214   -2.1338    3.6784 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4998   -0.3659    3.4791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1207   -1.7014    2.6286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0262    0.0539    2.9692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3031    0.3825    1.3391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6022   -2.1492    2.8452 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0107   -1.2074    1.4488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2445   -1.1017   -0.7094 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5736   -3.2851   -0.5730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6751   -2.8935   -1.8235 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0377   -2.2779   -1.9573 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1811   -0.4074   -1.9287 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9689   -0.4068   -1.4837 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3675    1.0202   -2.2316 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7814    1.8368   -1.0100 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4850    2.9288   -1.7270 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5260    2.6070    0.0078 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6644   -0.0681   -0.9449 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4851   -0.8615   -2.0175 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3641   -2.2830   -0.3337 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5320   -2.3163    2.8174 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1804   -2.9337    1.8550 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9174   -1.5106    2.9958 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8896    0.1040    2.6504 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1709    0.5581    0.9642 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5747    0.9203    1.7009 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5161   -0.9569    1.4399 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7881   -3.0434   -0.1490 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4755    1.7560   -1.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    1.7319    0.7380 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4255    3.1263   -0.1368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6054    1.9647    0.8162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8278    0.6960   -0.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6763    0.4675   -2.2027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1536    3.0733   -1.9043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3959    3.8705   -0.7444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8276    3.8777    0.0497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8918    2.5343    0.4290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3803    1.3885   -3.9954 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2118    1.0524   -2.7494 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8306    2.9321   -0.5034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4913    1.5758    1.2013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9361   -0.7874    0.8870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8348   -2.2503   -0.4241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8449   -1.3170   -1.4845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0672   -1.1971   -2.5940 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
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 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
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 18 22  1  0
 22 23  1  0
 11 24  1  0
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 27 29  1  0
 29 30  2  0
 29 31  1  0
 31 32  2  0
 32 33  1  0
 33 34  2  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 35  3  1  0
 22 13  1  0
  1 38  1  0
  1 39  1  0
  1 40  1  0
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  2 42  1  0
  3 43  1  1
  7 44  1  0
  8 45  1  0
  9 46  1  1
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 10 49  1  0
 11 50  1  6
 13 51  1  6
 15 52  1  6
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 18 58  1  6
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 27 73  1  6
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 31 77  1  0
 32 78  1  0
 33 79  1  0
 34 80  1  0
 35 81  1  1
 36 82  1  0
 36 83  1  0
 37 84  1  0
M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0      -3.358  -1.083   3.612  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.449  -0.827   2.630  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.888  -0.565   1.237  0.00  0.00           C+0
HETATM    4  O   UNK     0      -3.172  -1.664   0.808  0.00  0.00           O+0
HETATM    5  C   UNK     0      -2.178  -2.408   1.338  0.00  0.00           C+0
HETATM    6  O   UNK     0      -2.438  -3.685   1.492  0.00  0.00           O+0
HETATM    7  C   UNK     0      -0.862  -2.000   1.765  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.048  -1.479   0.975  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.181  -1.251  -0.466  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.200  -2.507  -1.273  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.725  -0.139  -0.936  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.710   0.043   0.032  0.00  0.00           O+0
HETATM   13  C   UNK     0       3.005  -0.117  -0.417  0.00  0.00           C+0
HETATM   14  O   UNK     0       3.737   1.079  -0.291  0.00  0.00           O+0
HETATM   15  C   UNK     0       4.793   0.957  -1.186  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.728   2.144  -0.977  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.568  -0.295  -1.042  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.171  -1.213   0.045  0.00  0.00           C+0
HETATM   19  N   UNK     0       6.022  -1.128   1.209  0.00  0.00           N+0
HETATM   20  C   UNK     0       5.612  -2.007   2.265  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.363   0.174   1.648  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.725  -1.174   0.362  0.00  0.00           C+0
HETATM   23  O   UNK     0       3.087  -2.409   0.113  0.00  0.00           O+0
HETATM   24  C   UNK     0       0.048   1.193  -1.087  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.264   2.058   0.136  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.449   1.106  -1.311  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.068   2.442  -1.620  0.00  0.00           C+0
HETATM   28  C   UNK     0      -2.581   3.174  -0.386  0.00  0.00           C+0
HETATM   29  C   UNK     0      -3.066   2.456  -2.697  0.00  0.00           C+0
HETATM   30  O   UNK     0      -2.709   3.300  -3.646  0.00  0.00           O+0
HETATM   31  C   UNK     0      -4.289   1.790  -2.941  0.00  0.00           C+0
HETATM   32  C   UNK     0      -5.345   1.535  -2.182  0.00  0.00           C+0
HETATM   33  C   UNK     0      -5.493   1.903  -0.819  0.00  0.00           C+0
HETATM   34  C   UNK     0      -5.351   1.079   0.200  0.00  0.00           C+0
HETATM   35  C   UNK     0      -5.043  -0.316   0.288  0.00  0.00           C+0
HETATM   36  C   UNK     0      -4.921  -1.200  -0.866  0.00  0.00           C+0
HETATM   37  O   UNK     0      -3.784  -1.103  -1.646  0.00  0.00           O+0
HETATM   38  H   UNK     0      -3.769  -0.865   4.642  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.021  -2.134   3.678  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.500  -0.366   3.479  0.00  0.00           H+0
HETATM   41  H   UNK     0      -5.121  -1.701   2.629  0.00  0.00           H+0
HETATM   42  H   UNK     0      -5.026   0.054   2.969  0.00  0.00           H+0
HETATM   43  H   UNK     0      -3.303   0.383   1.339  0.00  0.00           H+0
HETATM   44  H   UNK     0      -0.602  -2.149   2.845  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.011  -1.207   1.449  0.00  0.00           H+0
HETATM   46  H   UNK     0      -1.244  -1.102  -0.709  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.574  -3.285  -0.573  0.00  0.00           H+0
HETATM   48  H   UNK     0      -0.675  -2.894  -1.823  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.038  -2.278  -1.957  0.00  0.00           H+0
HETATM   50  H   UNK     0       1.181  -0.407  -1.929  0.00  0.00           H+0
HETATM   51  H   UNK     0       2.969  -0.407  -1.484  0.00  0.00           H+0
HETATM   52  H   UNK     0       4.367   1.020  -2.232  0.00  0.00           H+0
HETATM   53  H   UNK     0       6.781   1.837  -1.010  0.00  0.00           H+0
HETATM   54  H   UNK     0       5.485   2.929  -1.727  0.00  0.00           H+0
HETATM   55  H   UNK     0       5.526   2.607   0.008  0.00  0.00           H+0
HETATM   56  H   UNK     0       6.664  -0.068  -0.945  0.00  0.00           H+0
HETATM   57  H   UNK     0       5.485  -0.862  -2.018  0.00  0.00           H+0
HETATM   58  H   UNK     0       5.364  -2.283  -0.334  0.00  0.00           H+0
HETATM   59  H   UNK     0       6.532  -2.316   2.817  0.00  0.00           H+0
HETATM   60  H   UNK     0       5.180  -2.934   1.855  0.00  0.00           H+0
HETATM   61  H   UNK     0       4.917  -1.511   2.996  0.00  0.00           H+0
HETATM   62  H   UNK     0       6.890   0.104   2.650  0.00  0.00           H+0
HETATM   63  H   UNK     0       7.171   0.558   0.964  0.00  0.00           H+0
HETATM   64  H   UNK     0       5.575   0.920   1.701  0.00  0.00           H+0
HETATM   65  H   UNK     0       3.516  -0.957   1.440  0.00  0.00           H+0
HETATM   66  H   UNK     0       3.788  -3.043  -0.149  0.00  0.00           H+0
HETATM   67  H   UNK     0       0.476   1.756  -1.961  0.00  0.00           H+0
HETATM   68  H   UNK     0       1.139   1.732   0.738  0.00  0.00           H+0
HETATM   69  H   UNK     0       0.426   3.126  -0.137  0.00  0.00           H+0
HETATM   70  H   UNK     0      -0.605   1.965   0.816  0.00  0.00           H+0
HETATM   71  H   UNK     0      -1.828   0.696  -0.357  0.00  0.00           H+0
HETATM   72  H   UNK     0      -1.676   0.468  -2.203  0.00  0.00           H+0
HETATM   73  H   UNK     0      -1.154   3.073  -1.904  0.00  0.00           H+0
HETATM   74  H   UNK     0      -3.396   3.870  -0.744  0.00  0.00           H+0
HETATM   75  H   UNK     0      -1.828   3.878   0.050  0.00  0.00           H+0
HETATM   76  H   UNK     0      -2.892   2.534   0.429  0.00  0.00           H+0
HETATM   77  H   UNK     0      -4.380   1.389  -3.995  0.00  0.00           H+0
HETATM   78  H   UNK     0      -6.212   1.052  -2.749  0.00  0.00           H+0
HETATM   79  H   UNK     0      -5.831   2.932  -0.503  0.00  0.00           H+0
HETATM   80  H   UNK     0      -5.491   1.576   1.201  0.00  0.00           H+0
HETATM   81  H   UNK     0      -5.936  -0.787   0.887  0.00  0.00           H+0
HETATM   82  H   UNK     0      -4.835  -2.250  -0.424  0.00  0.00           H+0
HETATM   83  H   UNK     0      -5.845  -1.317  -1.484  0.00  0.00           H+0
HETATM   84  H   UNK     0      -4.067  -1.197  -2.594  0.00  0.00           H+0
CONECT    1    2   38   39   40                                             
CONECT    2    1    3   41   42                                             
CONECT    3    2    4   35   43                                             
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   44                                                  
CONECT    8    7    9   45                                                  
CONECT    9    8   10   11   46                                             
CONECT   10    9   47   48   49                                             
CONECT   11    9   12   24   50                                             
CONECT   12   11   13                                                       
CONECT   13   12   14   22   51                                             
CONECT   14   13   15                                                       
CONECT   15   14   16   17   52                                             
CONECT   16   15   53   54   55                                             
CONECT   17   15   18   56   57                                             
CONECT   18   17   19   22   58                                             
CONECT   19   18   20   21                                                  
CONECT   20   19   59   60   61                                             
CONECT   21   19   62   63   64                                             
CONECT   22   18   23   13   65                                             
CONECT   23   22   66                                                       
CONECT   24   11   25   26   67                                             
CONECT   25   24   68   69   70                                             
CONECT   26   24   27   71   72                                             
CONECT   27   26   28   29   73                                             
CONECT   28   27   74   75   76                                             
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   77                                                  
CONECT   32   31   33   78                                                  
CONECT   33   32   34   79                                                  
CONECT   34   33   35   80                                                  
CONECT   35   34   36    3   81                                             
CONECT   36   35   37   82   83                                             
CONECT   37   36   84                                                       
CONECT   38    1                                                            
CONECT   39    1                                                            
CONECT   40    1                                                            
CONECT   41    2                                                            
CONECT   42    2                                                            
CONECT   43    3                                                            
CONECT   44    7                                                            
CONECT   45    8                                                            
CONECT   46    9                                                            
CONECT   47   10                                                            
CONECT   48   10                                                            
CONECT   49   10                                                            
CONECT   50   11                                                            
CONECT   51   13                                                            
CONECT   52   15                                                            
CONECT   53   16                                                            
CONECT   54   16                                                            
CONECT   55   16                                                            
CONECT   56   17                                                            
CONECT   57   17                                                            
CONECT   58   18                                                            
CONECT   59   20                                                            
CONECT   60   20                                                            
CONECT   61   20                                                            
CONECT   62   21                                                            
CONECT   63   21                                                            
CONECT   64   21                                                            
CONECT   65   22                                                            
CONECT   66   23                                                            
CONECT   67   24                                                            
CONECT   68   25                                                            
CONECT   69   25                                                            
CONECT   70   25                                                            
CONECT   71   26                                                            
CONECT   72   26                                                            
CONECT   73   27                                                            
CONECT   74   28                                                            
CONECT   75   28                                                            
CONECT   76   28                                                            
CONECT   77   31                                                            
CONECT   78   32                                                            
CONECT   79   33                                                            
CONECT   80   34                                                            
CONECT   81   35                                                            
CONECT   82   36                                                            
CONECT   83   36                                                            
CONECT   84   37                                                            
MASTER        0    0    0    0    0    0    0    0   84    0  170    0
END

RDKit          3D

84 85  0  0  0  0  0  0  0  0999 V2000
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M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₉H₄₇NO₇

Average Mass

521.6950 Da

Monoisotopic Mass

521.33525 Da

IUPAC Name

(3Z,5S,6R,7R,9S,11Z,13Z,15S,16R)-6-{[(2R,3S,4R,6S)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-16-ethyl-15-(hydroxymethyl)-5,7,9-trimethyl-1-oxacyclohexadeca-3,11,13-triene-2,10-dione

Traditional Name

(3Z,5S,6R,7R,9S,11Z,13Z,15S,16R)-6-{[(2R,3S,4R,6S)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-16-ethyl-15-(hydroxymethyl)-5,7,9-trimethyl-1-oxacyclohexadeca-3,11,13-triene-2,10-dione

CAS Registry Number

Not Available

SMILES

CCC1OC(=O)\C=C/C(C)C(OC2OC(C)CC(C2O)N(C)C)C(C)CC(C)C(=O)\C=C/C=C\C1CO

InChI Identifier

InChI=1S/C29H47NO7/c1-8-25-22(17-31)11-9-10-12-24(32)19(3)15-20(4)28(18(2)13-14-26(33)36-25)37-29-27(34)23(30(6)7)16-21(5)35-29/h9-14,18-23,25,27-29,31,34H,8,15-17H2,1-7H3/b11-9-,12-10-,14-13-

InChI Key

HREUKRQZLNMEFQ-BXNPAKMDSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Micromonospora	NPAtlas	6833134
Micromonospora griseorubida	LOTUS Database	35616633
Micromonospora griseorubida sp. nov.	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3	ALOGPS
logP	4.2	ChemAxon
logS	-3.9	ALOGPS
pKa (Strongest Acidic)	12.83	ChemAxon
pKa (Strongest Basic)	8.38	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	105.53 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	146.79 m³·mol⁻¹	ChemAxon
Polarizability	57.84 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Showing NP-Card for Mycinamicin VII (NP0021964)

MOL for NP0021964 (Mycinamicin VII)

3D MOL for NP0021964 (Mycinamicin VII)

3D SDF for NP0021964 (Mycinamicin VII)

3D-SDF for NP0021964 (Mycinamicin VII)

PDB for NP0021964 (Mycinamicin VII)

3D PDB for NP0021964 (Mycinamicin VII)

SMILES for NP0021964 (Mycinamicin VII)

INCHI for NP0021964 (Mycinamicin VII)

Structure for NP0021964 (Mycinamicin VII)

3D Structure for NP0021964 (Mycinamicin VII)