NP-MRD: Showing NP-Card for Mycinamicin VI (NP0021963)

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Record Information

Version

2.0

Created at

2021-01-06 07:12:08 UTC

Updated at

2021-07-15 17:37:46 UTC

NP-MRD ID

NP0021963

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Mycinamicin VI

Provided By

NPAtlas

Description

Mycinamicin VI is found in Micromonospora, Micromonospora griseorubida and Micromonospora griseorubida sp. nov.. Mycinamicin VI was first documented in 1983 (PMID: 6833134).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042108023D          

104106  0  0  0  0            999 V2000
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M  END

     RDKit          3D

104106  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652307042108023D          

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M  END
> <DATABASE_ID>
NP0021963

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]1([H])[C@]([H])(OC([H])([H])[C@]2([H])\C([H])=C(\[H])/C(/[H])=C([H])\C(=O)[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@@]([H])(O[C@@]3([H])O[C@@]([H])(C([H])([H])[H])C([H])([H])[C@]([H])(N(C([H])([H])[H])C([H])([H])[H])[C@]3([H])O[H])[C@@]([H])(\C([H])=C([H])/C(=O)O[C@@]2([H])C([H])([H])C([H])([H])[H])C([H])([H])[H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C35H57NO11/c1-9-27-24(18-43-34-32(42)31(41)29(39)23(6)45-34)12-10-11-13-26(37)20(3)16-21(4)33(19(2)14-15-28(38)46-27)47-35-30(40)25(36(7)8)17-22(5)44-35/h10-15,19-25,27,29-35,39-42H,9,16-18H2,1-8H3/b12-10-,13-11-,15-14-/t19-,20+,21-,22+,23-,24+,25+,27+,29-,30+,31+,32+,33+,34-,35-/m1/s1

> <INCHI_KEY>
ORPUAOXOPLNKNG-DAWHNLTGSA-N

> <FORMULA>
C35H57NO11

> <MOLECULAR_WEIGHT>
667.837

> <EXACT_MASS>
667.393161659

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
104

> <JCHEM_AVERAGE_POLARIZABILITY>
73.26689683751924

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3Z,5R,6R,7R,9S,11Z,13Z,15S,16S)-6-{[(2R,3S,4S,6S)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-16-ethyl-5,7,9-trimethyl-15-({[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)-1-oxacyclohexadeca-3,11,13-triene-2,10-dione

> <ALOGPS_LOGP>
2.54

> <JCHEM_LOGP>
3.473999168999999

> <ALOGPS_LOGS>
-3.67

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
12.793587518050277

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.1289636181447

> <JCHEM_PKA_STRONGEST_BASIC>
8.38093603672737

> <JCHEM_POLAR_SURFACE_AREA>
164.45000000000002

> <JCHEM_REFRACTIVITY>
177.6641

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.44e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3Z,5R,6R,7R,9S,11Z,13Z,15S,16S)-6-{[(2R,3S,4S,6S)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-16-ethyl-5,7,9-trimethyl-15-({[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)-1-oxacyclohexadeca-3,11,13-triene-2,10-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

104106  0  0  0  0  0  0  0  0999 V2000
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 20 69  1  0
 20 70  1  0
 20 71  1  0
 21 72  1  0
 21 73  1  0
 21 74  1  0
 22 75  1  1
 23 76  1  0
 24 77  1  6
 25 78  1  0
 25 79  1  0
 25 80  1  0
 26 81  1  0
 26 82  1  0
 27 83  1  6
 28 84  1  0
 28 85  1  0
 28 86  1  0
 31 87  1  0
 32 88  1  0
 33 89  1  0
 34 90  1  0
 35 91  1  1
 36 92  1  0
 36 93  1  0
 38 94  1  1
 40 95  1  6
 41 96  1  0
 41 97  1  0
 41 98  1  0
 42 99  1  6
 43100  1  0
 44101  1  1
 45102  1  0
 46103  1  1
 47104  1  0
M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0      -2.451  -1.728   3.004  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.434  -1.990   1.933  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.106  -1.970   0.580  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.184  -2.244  -0.459  0.00  0.00           O+0
HETATM    5  C   UNK     0       0.020  -2.932  -0.350  0.00  0.00           C+0
HETATM    6  O   UNK     0       0.062  -4.078  -0.975  0.00  0.00           O+0
HETATM    7  C   UNK     0       1.195  -2.520   0.371  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.062  -1.643  -0.057  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.064  -0.905  -1.310  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.788  -0.534  -1.951  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.881   0.397  -1.174  0.00  0.00           C+0
HETATM   12  O   UNK     0       3.879   0.258  -0.247  0.00  0.00           O+0
HETATM   13  C   UNK     0       5.144   0.265  -0.824  0.00  0.00           C+0
HETATM   14  O   UNK     0       5.950   1.300  -0.381  0.00  0.00           O+0
HETATM   15  C   UNK     0       7.283   1.139  -0.701  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.126   2.334  -0.393  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.938  -0.084  -0.148  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.862  -0.966   0.442  0.00  0.00           C+0
HETATM   19  N   UNK     0       7.298  -2.237   0.897  0.00  0.00           N+0
HETATM   20  C   UNK     0       7.832  -3.127  -0.080  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.290  -2.079   1.949  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.804  -1.084  -0.639  0.00  0.00           C+0
HETATM   23  O   UNK     0       6.376  -1.449  -1.853  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.054   1.612  -0.973  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.007   2.814  -1.043  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.263   1.658   0.312  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.015   2.494   0.179  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.343   3.977   0.137  0.00  0.00           C+0
HETATM   29  C   UNK     0      -1.016   2.209   1.207  0.00  0.00           C+0
HETATM   30  O   UNK     0      -0.660   1.616   2.243  0.00  0.00           O+0
HETATM   31  C   UNK     0      -2.408   2.596   1.051  0.00  0.00           C+0
HETATM   32  C   UNK     0      -3.226   2.202   0.090  0.00  0.00           C+0
HETATM   33  C   UNK     0      -2.868   1.302  -0.978  0.00  0.00           C+0
HETATM   34  C   UNK     0      -2.715  -0.006  -0.863  0.00  0.00           C+0
HETATM   35  C   UNK     0      -2.902  -0.743   0.421  0.00  0.00           C+0
HETATM   36  C   UNK     0      -4.416  -1.062   0.432  0.00  0.00           C+0
HETATM   37  O   UNK     0      -5.154   0.092   0.281  0.00  0.00           O+0
HETATM   38  C   UNK     0      -6.504  -0.126   0.266  0.00  0.00           C+0
HETATM   39  O   UNK     0      -7.004   0.259  -0.979  0.00  0.00           O+0
HETATM   40  C   UNK     0      -8.217  -0.370  -1.250  0.00  0.00           C+0
HETATM   41  C   UNK     0      -9.006   0.324  -2.335  0.00  0.00           C+0
HETATM   42  C   UNK     0      -9.038  -0.583  -0.006  0.00  0.00           C+0
HETATM   43  O   UNK     0      -8.999  -1.929   0.401  0.00  0.00           O+0
HETATM   44  C   UNK     0      -8.737   0.361   1.107  0.00  0.00           C+0
HETATM   45  O   UNK     0      -9.491   1.534   1.037  0.00  0.00           O+0
HETATM   46  C   UNK     0      -7.270   0.653   1.311  0.00  0.00           C+0
HETATM   47  O   UNK     0      -7.081   2.032   1.115  0.00  0.00           O+0
HETATM   48  H   UNK     0      -2.949  -0.765   2.984  0.00  0.00           H+0
HETATM   49  H   UNK     0      -2.014  -1.860   4.029  0.00  0.00           H+0
HETATM   50  H   UNK     0      -3.241  -2.537   2.966  0.00  0.00           H+0
HETATM   51  H   UNK     0      -1.014  -3.008   2.147  0.00  0.00           H+0
HETATM   52  H   UNK     0      -0.640  -1.212   1.993  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.827  -2.827   0.595  0.00  0.00           H+0
HETATM   54  H   UNK     0       1.398  -3.028   1.377  0.00  0.00           H+0
HETATM   55  H   UNK     0       2.897  -1.458   0.692  0.00  0.00           H+0
HETATM   56  H   UNK     0       2.603  -1.529  -2.111  0.00  0.00           H+0
HETATM   57  H   UNK     0       1.082   0.117  -2.852  0.00  0.00           H+0
HETATM   58  H   UNK     0       0.270  -1.372  -2.488  0.00  0.00           H+0
HETATM   59  H   UNK     0       0.067  -0.024  -1.329  0.00  0.00           H+0
HETATM   60  H   UNK     0       3.359   0.501  -2.183  0.00  0.00           H+0
HETATM   61  H   UNK     0       5.000   0.404  -1.911  0.00  0.00           H+0
HETATM   62  H   UNK     0       7.303   1.044  -1.829  0.00  0.00           H+0
HETATM   63  H   UNK     0       7.571   3.251  -0.736  0.00  0.00           H+0
HETATM   64  H   UNK     0       8.403   2.413   0.677  0.00  0.00           H+0
HETATM   65  H   UNK     0       9.030   2.293  -1.033  0.00  0.00           H+0
HETATM   66  H   UNK     0       8.447  -0.665  -0.957  0.00  0.00           H+0
HETATM   67  H   UNK     0       8.688   0.218   0.616  0.00  0.00           H+0
HETATM   68  H   UNK     0       6.372  -0.449   1.295  0.00  0.00           H+0
HETATM   69  H   UNK     0       8.487  -2.681  -0.832  0.00  0.00           H+0
HETATM   70  H   UNK     0       8.481  -3.868   0.476  0.00  0.00           H+0
HETATM   71  H   UNK     0       7.034  -3.777  -0.538  0.00  0.00           H+0
HETATM   72  H   UNK     0       9.302  -2.183   1.459  0.00  0.00           H+0
HETATM   73  H   UNK     0       8.233  -2.897   2.693  0.00  0.00           H+0
HETATM   74  H   UNK     0       8.179  -1.125   2.489  0.00  0.00           H+0
HETATM   75  H   UNK     0       5.027  -1.795  -0.305  0.00  0.00           H+0
HETATM   76  H   UNK     0       5.737  -1.979  -2.369  0.00  0.00           H+0
HETATM   77  H   UNK     0       1.321   1.803  -1.784  0.00  0.00           H+0
HETATM   78  H   UNK     0       3.892   2.532  -1.661  0.00  0.00           H+0
HETATM   79  H   UNK     0       2.488   3.686  -1.452  0.00  0.00           H+0
HETATM   80  H   UNK     0       3.351   3.008  -0.010  0.00  0.00           H+0
HETATM   81  H   UNK     0       1.887   2.185   1.097  0.00  0.00           H+0
HETATM   82  H   UNK     0       1.063   0.660   0.741  0.00  0.00           H+0
HETATM   83  H   UNK     0      -0.451   2.239  -0.796  0.00  0.00           H+0
HETATM   84  H   UNK     0       1.333   4.167   0.569  0.00  0.00           H+0
HETATM   85  H   UNK     0       0.281   4.346  -0.904  0.00  0.00           H+0
HETATM   86  H   UNK     0      -0.445   4.490   0.765  0.00  0.00           H+0
HETATM   87  H   UNK     0      -2.872   3.277   1.813  0.00  0.00           H+0
HETATM   88  H   UNK     0      -4.252   2.659   0.119  0.00  0.00           H+0
HETATM   89  H   UNK     0      -2.739   1.698  -1.999  0.00  0.00           H+0
HETATM   90  H   UNK     0      -2.438  -0.637  -1.708  0.00  0.00           H+0
HETATM   91  H   UNK     0      -2.785   0.017   1.207  0.00  0.00           H+0
HETATM   92  H   UNK     0      -4.696  -1.517   1.401  0.00  0.00           H+0
HETATM   93  H   UNK     0      -4.675  -1.759  -0.366  0.00  0.00           H+0
HETATM   94  H   UNK     0      -6.703  -1.208   0.376  0.00  0.00           H+0
HETATM   95  H   UNK     0      -7.952  -1.384  -1.644  0.00  0.00           H+0
HETATM   96  H   UNK     0     -10.002   0.586  -1.932  0.00  0.00           H+0
HETATM   97  H   UNK     0      -9.201  -0.356  -3.210  0.00  0.00           H+0
HETATM   98  H   UNK     0      -8.463   1.210  -2.731  0.00  0.00           H+0
HETATM   99  H   UNK     0     -10.112  -0.403  -0.307  0.00  0.00           H+0
HETATM  100  H   UNK     0      -9.076  -2.485  -0.417  0.00  0.00           H+0
HETATM  101  H   UNK     0      -9.079  -0.146   2.058  0.00  0.00           H+0
HETATM  102  H   UNK     0      -9.012   2.266   1.534  0.00  0.00           H+0
HETATM  103  H   UNK     0      -6.905   0.374   2.321  0.00  0.00           H+0
HETATM  104  H   UNK     0      -6.691   2.446   1.940  0.00  0.00           H+0
CONECT    1    2   48   49   50                                             
CONECT    2    1    3   51   52                                             
CONECT    3    2    4   35   53                                             
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   54                                                  
CONECT    8    7    9   55                                                  
CONECT    9    8   10   11   56                                             
CONECT   10    9   57   58   59                                             
CONECT   11    9   12   24   60                                             
CONECT   12   11   13                                                       
CONECT   13   12   14   22   61                                             
CONECT   14   13   15                                                       
CONECT   15   14   16   17   62                                             
CONECT   16   15   63   64   65                                             
CONECT   17   15   18   66   67                                             
CONECT   18   17   19   22   68                                             
CONECT   19   18   20   21                                                  
CONECT   20   19   69   70   71                                             
CONECT   21   19   72   73   74                                             
CONECT   22   18   23   13   75                                             
CONECT   23   22   76                                                       
CONECT   24   11   25   26   77                                             
CONECT   25   24   78   79   80                                             
CONECT   26   24   27   81   82                                             
CONECT   27   26   28   29   83                                             
CONECT   28   27   84   85   86                                             
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   87                                                  
CONECT   32   31   33   88                                                  
CONECT   33   32   34   89                                                  
CONECT   34   33   35   90                                                  
CONECT   35   34   36    3   91                                             
CONECT   36   35   37   92   93                                             
CONECT   37   36   38                                                       
CONECT   38   37   39   46   94                                             
CONECT   39   38   40                                                       
CONECT   40   39   41   42   95                                             
CONECT   41   40   96   97   98                                             
CONECT   42   40   43   44   99                                             
CONECT   43   42  100                                                       
CONECT   44   42   45   46  101                                             
CONECT   45   44  102                                                       
CONECT   46   44   47   38  103                                             
CONECT   47   46  104                                                       
CONECT   48    1                                                            
CONECT   49    1                                                            
CONECT   50    1                                                            
CONECT   51    2                                                            
CONECT   52    2                                                            
CONECT   53    3                                                            
CONECT   54    7                                                            
CONECT   55    8                                                            
CONECT   56    9                                                            
CONECT   57   10                                                            
CONECT   58   10                                                            
CONECT   59   10                                                            
CONECT   60   11                                                            
CONECT   61   13                                                            
CONECT   62   15                                                            
CONECT   63   16                                                            
CONECT   64   16                                                            
CONECT   65   16                                                            
CONECT   66   17                                                            
CONECT   67   17                                                            
CONECT   68   18                                                            
CONECT   69   20                                                            
CONECT   70   20                                                            
CONECT   71   20                                                            
CONECT   72   21                                                            
CONECT   73   21                                                            
CONECT   74   21                                                            
CONECT   75   22                                                            
CONECT   76   23                                                            
CONECT   77   24                                                            
CONECT   78   25                                                            
CONECT   79   25                                                            
CONECT   80   25                                                            
CONECT   81   26                                                            
CONECT   82   26                                                            
CONECT   83   27                                                            
CONECT   84   28                                                            
CONECT   85   28                                                            
CONECT   86   28                                                            
CONECT   87   31                                                            
CONECT   88   32                                                            
CONECT   89   33                                                            
CONECT   90   34                                                            
CONECT   91   35                                                            
CONECT   92   36                                                            
CONECT   93   36                                                            
CONECT   94   38                                                            
CONECT   95   40                                                            
CONECT   96   41                                                            
CONECT   97   41                                                            
CONECT   98   41                                                            
CONECT   99   42                                                            
CONECT  100   43                                                            
CONECT  101   44                                                            
CONECT  102   45                                                            
CONECT  103   46                                                            
CONECT  104   47                                                            
MASTER        0    0    0    0    0    0    0    0  104    0  212    0
END

RDKit          3D

104106  0  0  0  0  0  0  0  0999 V2000
   -2.4507   -1.7281    3.0041 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4338   -1.9897    1.9326 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1056   -1.9698    0.5800 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1842   -2.2445   -0.4594 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0203   -2.9320   -0.3502 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0620   -4.0781   -0.9753 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1951   -2.5200    0.3713 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0619   -1.6430   -0.0566 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0642   -0.9048   -1.3097 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7883   -0.5335   -1.9511 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8808    0.3969   -1.1743 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8790    0.2580   -0.2466 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1440    0.2652   -0.8236 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9503    1.3004   -0.3808 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2827    1.1386   -0.7006 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.1257    2.3345   -0.3931 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9377   -0.0837   -0.1477 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8617   -0.9662    0.4422 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2979   -2.2366    0.8965 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.8319   -3.1265   -0.0801 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2897   -2.0793    1.9489 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8043   -1.0836   -0.6387 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.3760   -1.4490   -1.8525 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0535    1.6120   -0.9734 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0070    2.8138   -1.0427 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2632    1.6584    0.3122 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0151    2.4936    0.1789 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3426    3.9772    0.1366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0164    2.2095    1.2067 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6596    1.6163    2.2428 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4081    2.5962    1.0513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2258    2.2020    0.0897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8677    1.3016   -0.9780 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7148   -0.0058   -0.8632 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9015   -0.7428    0.4206 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4158   -1.0619    0.4324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1537    0.0922    0.2809 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5041   -0.1259    0.2661 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.0043    0.2593   -0.9785 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2168   -0.3703   -1.2504 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.0057    0.3241   -2.3354 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0376   -0.5829   -0.0056 C   0  0  1  0  0  0  0  0  0  0  0  0
   -8.9990   -1.9293    0.4005 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7368    0.3609    1.1075 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.4913    1.5338    1.0367 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2704    0.6532    1.3111 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.0814    2.0323    1.1153 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₅H₅₇NO₁₁

Average Mass

667.8370 Da

Monoisotopic Mass

667.39316 Da

IUPAC Name

(3Z,5R,6R,7R,9S,11Z,13Z,15S,16S)-6-{[(2R,3S,4S,6S)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-16-ethyl-5,7,9-trimethyl-15-({[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)-1-oxacyclohexadeca-3,11,13-triene-2,10-dione

Traditional Name

CAS Registry Number

Not Available

SMILES

CC[C@@H]1OC(=O)\C=C/[C@@H](C)[C@H](O[C@H]2O[C@@H](C)C[C@@H]([C@@H]2O)N(C)C)[C@H](C)C[C@H](C)C(=O)\C=C/C=C\[C@H]1CO[C@@H]1O[C@H](C)[C@@H](O)[C@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C35H57NO11/c1-9-27-24(18-43-34-32(42)31(41)29(39)23(6)45-34)12-10-11-13-26(37)20(3)16-21(4)33(19(2)14-15-28(38)46-27)47-35-30(40)25(36(7)8)17-22(5)44-35/h10-15,19-25,27,29-35,39-42H,9,16-18H2,1-8H3/b12-10-,13-11-,15-14-/t19-,20+,21-,22+,23-,24+,25+,27+,29-,30+,31+,32+,33+,34-,35-/m1/s1

InChI Key

ORPUAOXOPLNKNG-DAWHNLTGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Micromonospora	NPAtlas	6833134
Micromonospora griseorubida	LOTUS Database	35616633
Micromonospora griseorubida sp. nov.	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.54	ALOGPS
logP	3.47	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	12.13	ChemAxon
pKa (Strongest Basic)	8.38	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	164.45 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	177.66 m³·mol⁻¹	ChemAxon
Polarizability	73.27 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

Not Available

References

General References

Hayashi M, Kinoshita K, Sudate Y, Satoi S, Sakakibara H, Harada K, Suzuki M: Mycinamicins, new macrolide antibiotics. VII. Structures of minor components, mycinamicin VI and VII. J Antibiot (Tokyo). 1983 Feb;36(2):175-8. doi: 10.7164/antibiotics.36.175. [PubMed:6833134 ]

Showing NP-Card for Mycinamicin VI (NP0021963)

MOL for NP0021963 (Mycinamicin VI)

3D MOL for NP0021963 (Mycinamicin VI)

3D SDF for NP0021963 (Mycinamicin VI)

3D-SDF for NP0021963 (Mycinamicin VI)

PDB for NP0021963 (Mycinamicin VI)

3D PDB for NP0021963 (Mycinamicin VI)

SMILES for NP0021963 (Mycinamicin VI)

INCHI for NP0021963 (Mycinamicin VI)

Structure for NP0021963 (Mycinamicin VI)

3D Structure for NP0021963 (Mycinamicin VI)