Np mrd loader

Record Information
Version2.0
Created at2021-01-06 07:09:53 UTC
Updated at2021-07-15 17:37:38 UTC
NP-MRD IDNP0021917
Secondary Accession NumbersNone
Natural Product Identification
Common NameArugomycin
Provided ByNPAtlasNPAtlas Logo
Description Arugomycin is found in Streptomyces and Streptomyces violaceochromogenes. Arugomycin was first documented in 1983 (PMID: 6651934). Based on a literature review very few articles have been published on 4-{[(2R,3S,4R,6S)-6-{[(2R,3S,4R,6S)-6-{[(2R,3R,4R,6S)-6-{[(2R,3S,4S,6R)-6-{[(1S,10R,12S,13R,21S,22R,23R,24S)-23-(dimethylamino)-4,8,12,22-tetrahydroxy-24-{[(2S,4S,5S,6S)-4-hydroxy-5-{[(2S,4R,5S,6R)-5-{[(2R,4S,5R,6S)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4,6-dimethyl-4-nitrooxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-13-(methoxycarbonyl)-1,12-dimethyl-6,17-dioxo-20,25-dioxahexacyclo[19.3.1.0²,¹⁹.0⁵,¹⁸.0⁷,¹⁶.0⁹,¹⁴]Pentacosa-2,4,7(16),8,14,18-hexaen-10-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-hydroxy-2-methyloxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-oxobut-2-enoic acid.
Structure
Thumb
Synonyms
ValueSource
4-{[(2R,3S,4R,6S)-6-{[(2R,3S,4R,6S)-6-{[(2R,3R,4R,6S)-6-{[(2R,3S,4S,6R)-6-{[(1S,10R,12S,13R,21S,22R,23R,24S)-23-(dimethylamino)-4,8,12,22-tetrahydroxy-24-{[(2S,4S,5S,6S)-4-hydroxy-5-{[(2S,4R,5S,6R)-5-{[(2R,4S,5R,6S)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-4,6-dimethyl-4-nitrooxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-13-(methoxycarbonyl)-1,12-dimethyl-6,17-dioxo-20,25-dioxahexacyclo[19.3.1.0,.0,.0,.0,]pentacosa-2,4,7(16),8,14,18-hexaen-10-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-hydroxy-2-methyloxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-oxobut-2-enoateGenerator
Chemical FormulaC80H112N2O37
Average Mass1693.7530 Da
Monoisotopic Mass1692.69439 Da
IUPAC Name{[(2R,3S,4R,6S)-6-{[(2S,3S,4S,6S)-6-{[(1S,10R,12S,13R,21S,22R,23R,24S)-10-{[(2R,4S,5S,6R)-5-{[(2S,4R,5R,6R)-5-{[(2S,4R,5S,6R)-5-{[(2S,4R,5S,6R)-5-{[(2E)-3-carboxyprop-2-enoyl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-4-hydroxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-23-(dimethylamino)-4,8,12,22-tetrahydroxy-13-(methoxycarbonyl)-1,12-dimethyl-6,17-dioxo-20,25-dioxahexacyclo[19.3.1.0^{2,19}.0^{5,18}.0^{7,16}.0^{9,14}]pentacosa-2,4,7(16),8,14,18-hexaen-24-yl]oxy}-4-hydroxy-2-methyloxan-3-yl]oxy}-3-{[(2R,4S,5R,6S)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-2,4-dimethyloxan-4-yl]nitro}-lambda1-oxidanyl
Traditional Name[(2R,3S,4R,6S)-6-{[(2S,3S,4S,6S)-6-{[(1S,10R,12S,13R,21S,22R,23R,24S)-10-{[(2R,4S,5S,6R)-5-{[(2S,4R,5R,6R)-5-{[(2S,4R,5S,6R)-5-{[(2S,4R,5S,6R)-5-{[(2E)-3-carboxyprop-2-enoyl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-4-hydroxy-6-methyloxan-2-yl]oxy}-4-methoxy-6-methyloxan-2-yl]oxy}-23-(dimethylamino)-4,8,12,22-tetrahydroxy-13-(methoxycarbonyl)-1,12-dimethyl-6,17-dioxo-20,25-dioxahexacyclo[19.3.1.0^{2,19}.0^{5,18}.0^{7,16}.0^{9,14}]pentacosa-2,4,7(16),8,14,18-hexaen-24-yl]oxy}-4-hydroxy-2-methyloxan-3-yl]oxy}-3-{[(2R,4S,5R,6S)-5-hydroxy-4-methoxy-6-methyloxan-2-yl]oxy}-2,4-dimethyloxan-4-ylnitro]-lambda1-oxidanyl
CAS Registry NumberNot Available
SMILES
CO[C@H]1C[C@@H](O[C@@H]2[C@@H](C)O[C@H](C[C@@]2(C)[N+]([O-])=O)O[C@@H]2[C@H](C)O[C@H](C[C@@H]2O)O[C@H]2[C@@H]([C@@H](O)[C@H]3OC4=C5C(=O)C6=CC7=C([C@@H](C[C@](C)(O)[C@@H]7C(=O)OC)O[C@H]7C[C@H](OC)[C@@H](O[C@H]8C[C@@H](O)[C@@H](O[C@H]9C[C@@H](OC)[C@@H](O[C@H]%10C[C@@H](OC)[C@@H](OC(=O)\C=C\C(O)=O)[C@@H](C)O%10)[C@@H](C)O9)[C@@H](C)O8)[C@@H](C)O7)C(O)=C6C(=O)C5=C(O)C=C4[C@]2(C)O3)N(C)C)O[C@@H](C)[C@H]1O
InChI Identifier
InChI=1S/C80H112N2O37/c1-30-63(89)43(98-13)24-55(103-30)116-74-36(7)109-56(29-78(74,8)82(96)97)115-69-32(3)105-51(23-42(69)85)117-75-62(81(11)12)67(93)77-118-73-39(80(75,10)119-77)21-40(83)59-60(73)64(90)38-20-37-57(65(91)58(38)66(59)92)47(28-79(9,95)61(37)76(94)102-17)110-52-25-45(100-15)71(34(5)106-52)113-50-22-41(84)68(31(2)104-50)112-53-27-46(101-16)72(35(6)108-53)114-54-26-44(99-14)70(33(4)107-54)111-49(88)19-18-48(86)87/h18-21,30-36,41-47,50-56,61-63,67-72,74-75,77,83-85,89,91,93,95H,22-29H2,1-17H3,(H,86,87)/b19-18+/t30-,31+,32-,33+,34+,35+,36+,41+,42-,43-,44+,45-,46+,47+,50-,51-,52-,53-,54-,55+,56-,61-,62+,63+,67+,68-,69+,70-,71-,72-,74+,75-,77-,78+,79-,80-/m0/s1
InChI KeyMWGPOKWHXRTZII-IBBNRVHVSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces violaceochromogenesLOTUS Database
Species Where Detected
Species NameSourceReference
Streptomyces 1098-AV2KNApSAcK Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.49ALOGPS
logP3.83ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)3.04ChemAxon
pKa (Strongest Basic)6.68ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count36ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area496.63 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity397.57 m³·mol⁻¹ChemAxon
Polarizability169.62 ųChemAxon
Number of Rings13ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA020929
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78443043
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139589043
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kawai H, Hayakawa Y, Nakagawa M, Imamura K, Tanabe K, Shimazu A, Seto H, Otake N: Arugomycin, a new anthracycline antibiotic. J Antibiot (Tokyo). 1983 Nov;36(11):1569-71. doi: 10.7164/antibiotics.36.1569. [PubMed:6651934 ]