NP-MRD: Showing NP-Card for Northienamycin (NP0021914)

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Record Information

Version

2.0

Created at

2021-01-06 07:09:44 UTC

Updated at

2021-07-15 17:37:38 UTC

NP-MRD ID

NP0021914

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Northienamycin

Provided By

NPAtlas

Description

Northienamycin is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Northienamycin is found in Streptomyces cattleya. Northienamycin was first documented in 1983 (PMID: 6630073). Based on a literature review very few articles have been published on Northienamycin.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105193D          

 31 32  0  0  0  0            999 V2000
    4.0825    1.1941   -1.9484 N   0  0  1  0  0  0  0  0  0  0  0  0
    3.3478    0.6175   -0.8373 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1028   -0.8461   -1.0659 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1890   -1.5051    0.3482 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.5552   -0.8081    0.4167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4036   -1.0649    1.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2536   -1.9817    2.4419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1967   -2.1535    3.2345 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9286   -2.6588    2.6191 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5547   -0.2972    1.0111 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7569    0.4499    1.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6839    0.5751    1.9233 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4147    1.0166   -0.2559 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6417    0.9192   -1.1375 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7078    1.6372   -0.5920 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4734   -0.1431   -0.4636 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0001    0.1935   -0.5606 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8954    0.5777   -2.1750 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4700    1.1813   -2.8084 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4170    1.1654   -0.6802 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9948    0.7317    0.0637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5078   -0.9484   -2.0012 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0796   -1.3557   -1.1709 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6381   -2.4683    3.2843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9810    2.0168   -0.2500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9823   -0.1540   -1.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3868    1.2903   -2.1571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4574    2.5416   -0.2963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8308   -0.9979   -1.0296 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4295    0.0425   -1.5476 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0872    1.2322   -0.1669 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  6 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17  5  1  0  0  0  0
 16 10  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  2 20  1  0  0  0  0
  2 21  1  0  0  0  0
  3 22  1  0  0  0  0
  3 23  1  0  0  0  0
  9 24  1  0  0  0  0
 13 25  1  1  0  0  0
 14 26  1  0  0  0  0
 14 27  1  0  0  0  0
 15 28  1  0  0  0  0
 16 29  1  6  0  0  0
 17 30  1  0  0  0  0
 17 31  1  0  0  0  0
M  END

     RDKit          3D

 31 32  0  0  0  0  0  0  0  0999 V2000
    4.0825    1.1941   -1.9484 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3478    0.6175   -0.8373 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1028   -0.8461   -1.0659 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1890   -1.5051    0.3482 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.5552   -0.8081    0.4167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4036   -1.0649    1.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2536   -1.9817    2.4419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1967   -2.1535    3.2345 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9286   -2.6588    2.6191 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5547   -0.2972    1.0111 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7569    0.4499    1.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6839    0.5751    1.9233 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4147    1.0166   -0.2559 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6417    0.9192   -1.1375 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7078    1.6372   -0.5920 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4734   -0.1431   -0.4636 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0001    0.1935   -0.5606 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8954    0.5777   -2.1750 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4700    1.1813   -2.8084 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4170    1.1654   -0.6802 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9948    0.7317    0.0637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5078   -0.9484   -2.0012 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0796   -1.3557   -1.1709 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6381   -2.4683    3.2843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9810    2.0168   -0.2500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9823   -0.1540   -1.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3868    1.2903   -2.1571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4574    2.5416   -0.2963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8308   -0.9979   -1.0296 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4295    0.0425   -1.5476 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0872    1.2322   -0.1669 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  6 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 17  5  1  0
 16 10  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  9 24  1  0
 13 25  1  1
 14 26  1  0
 14 27  1  0
 15 28  1  0
 16 29  1  6
 17 30  1  0
 17 31  1  0
M  END


  Mrv1652306242105193D          

 31 32  0  0  0  0            999 V2000
    4.0825    1.1941   -1.9484 N   0  0  1  0  0  0  0  0  0  0  0  0
    3.3478    0.6175   -0.8373 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1028   -0.8461   -1.0659 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1890   -1.5051    0.3482 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.5552   -0.8081    0.4167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4036   -1.0649    1.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2536   -1.9817    2.4419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1967   -2.1535    3.2345 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9286   -2.6588    2.6191 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5547   -0.2972    1.0111 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7569    0.4499    1.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6839    0.5751    1.9233 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4147    1.0166   -0.2559 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6417    0.9192   -1.1375 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7078    1.6372   -0.5920 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4734   -0.1431   -0.4636 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0001    0.1935   -0.5606 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8954    0.5777   -2.1750 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4700    1.1813   -2.8084 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4170    1.1654   -0.6802 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9948    0.7317    0.0637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5078   -0.9484   -2.0012 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0796   -1.3557   -1.1709 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6381   -2.4683    3.2843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9810    2.0168   -0.2500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9823   -0.1540   -1.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3868    1.2903   -2.1571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4574    2.5416   -0.2963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8308   -0.9979   -1.0296 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4295    0.0425   -1.5476 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0872    1.2322   -0.1669 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  6 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17  5  1  0  0  0  0
 16 10  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  2 20  1  0  0  0  0
  2 21  1  0  0  0  0
  3 22  1  0  0  0  0
  3 23  1  0  0  0  0
  9 24  1  0  0  0  0
 13 25  1  1  0  0  0
 14 26  1  0  0  0  0
 14 27  1  0  0  0  0
 15 28  1  0  0  0  0
 16 29  1  6  0  0  0
 17 30  1  0  0  0  0
 17 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021914

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C1=C(SC([H])([H])C([H])([H])N([H])[H])C([H])([H])[C@@]2([H])N1C(=O)[C@]2([H])C([H])([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C10H14N2O4S/c11-1-2-17-7-3-6-5(4-13)9(14)12(6)8(7)10(15)16/h5-6,13H,1-4,11H2,(H,15,16)/t5-,6-/m1/s1

> <INCHI_KEY>
CORBMZCTOZNVHZ-PHDIDXHHSA-N

> <FORMULA>
C10H14N2O4S

> <MOLECULAR_WEIGHT>
258.29

> <EXACT_MASS>
258.067428113

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
25.763636757704873

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5R,6S)-3-[(2-aminoethyl)sulfanyl]-6-(hydroxymethyl)-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid

> <ALOGPS_LOGP>
-2.02

> <JCHEM_LOGP>
-4.726203598619827

> <ALOGPS_LOGS>
-1.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.215615836509055

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.590703544039912

> <JCHEM_PKA_STRONGEST_BASIC>
9.65306249700051

> <JCHEM_POLAR_SURFACE_AREA>
103.86

> <JCHEM_REFRACTIVITY>
64.2921

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.75e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5R,6S)-3-[(2-aminoethyl)sulfanyl]-6-(hydroxymethyl)-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 31 32  0  0  0  0  0  0  0  0999 V2000
    4.0825    1.1941   -1.9484 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3478    0.6175   -0.8373 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1028   -0.8461   -1.0659 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1890   -1.5051    0.3482 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.5552   -0.8081    0.4167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4036   -1.0649    1.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2536   -1.9817    2.4419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1967   -2.1535    3.2345 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9286   -2.6588    2.6191 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5547   -0.2972    1.0111 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7569    0.4499    1.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6839    0.5751    1.9233 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4147    1.0166   -0.2559 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6417    0.9192   -1.1375 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7078    1.6372   -0.5920 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4734   -0.1431   -0.4636 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0001    0.1935   -0.5606 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8954    0.5777   -2.1750 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4700    1.1813   -2.8084 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4170    1.1654   -0.6802 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9948    0.7317    0.0637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5078   -0.9484   -2.0012 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0796   -1.3557   -1.1709 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6381   -2.4683    3.2843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9810    2.0168   -0.2500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9823   -0.1540   -1.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3868    1.2903   -2.1571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4574    2.5416   -0.2963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8308   -0.9979   -1.0296 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4295    0.0425   -1.5476 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0872    1.2322   -0.1669 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  6 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 17  5  1  0
 16 10  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  9 24  1  0
 13 25  1  1
 14 26  1  0
 14 27  1  0
 15 28  1  0
 16 29  1  6
 17 30  1  0
 17 31  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  N   UNK     0       4.082   1.194  -1.948  0.00  0.00           N+0
HETATM    2  C   UNK     0       3.348   0.618  -0.837  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.103  -0.846  -1.066  0.00  0.00           C+0
HETATM    4  S   UNK     0       2.189  -1.505   0.348  0.00  0.00           S+0
HETATM    5  C   UNK     0       0.555  -0.808   0.417  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.404  -1.065   1.329  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.254  -1.982   2.442  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.197  -2.154   3.235  0.00  0.00           O+0
HETATM    9  O   UNK     0       0.929  -2.659   2.619  0.00  0.00           O+0
HETATM   10  N   UNK     0      -1.555  -0.297   1.011  0.00  0.00           N+0
HETATM   11  C   UNK     0      -2.757   0.450   1.093  0.00  0.00           C+0
HETATM   12  O   UNK     0      -3.684   0.575   1.923  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.415   1.017  -0.256  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.642   0.919  -1.137  0.00  0.00           C+0
HETATM   15  O   UNK     0      -4.708   1.637  -0.592  0.00  0.00           O+0
HETATM   16  C   UNK     0      -1.473  -0.143  -0.464  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.000   0.194  -0.561  0.00  0.00           C+0
HETATM   18  H   UNK     0       4.895   0.578  -2.175  0.00  0.00           H+0
HETATM   19  H   UNK     0       3.470   1.181  -2.808  0.00  0.00           H+0
HETATM   20  H   UNK     0       2.417   1.165  -0.680  0.00  0.00           H+0
HETATM   21  H   UNK     0       3.995   0.732   0.064  0.00  0.00           H+0
HETATM   22  H   UNK     0       2.508  -0.948  -2.001  0.00  0.00           H+0
HETATM   23  H   UNK     0       4.080  -1.356  -1.171  0.00  0.00           H+0
HETATM   24  H   UNK     0       1.638  -2.468   3.284  0.00  0.00           H+0
HETATM   25  H   UNK     0      -1.981   2.017  -0.250  0.00  0.00           H+0
HETATM   26  H   UNK     0      -3.982  -0.154  -1.183  0.00  0.00           H+0
HETATM   27  H   UNK     0      -3.387   1.290  -2.157  0.00  0.00           H+0
HETATM   28  H   UNK     0      -4.457   2.542  -0.296  0.00  0.00           H+0
HETATM   29  H   UNK     0      -1.831  -0.998  -1.030  0.00  0.00           H+0
HETATM   30  H   UNK     0       0.430   0.043  -1.548  0.00  0.00           H+0
HETATM   31  H   UNK     0       0.087   1.232  -0.167  0.00  0.00           H+0
CONECT    1    2   18   19                                                  
CONECT    2    1    3   20   21                                             
CONECT    3    2    4   22   23                                             
CONECT    4    3    5                                                       
CONECT    5    4    6   17                                                  
CONECT    6    5    7   10                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   24                                                       
CONECT   10    6   11   16                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   16   25                                             
CONECT   14   13   15   26   27                                             
CONECT   15   14   28                                                       
CONECT   16   13   17   10   29                                             
CONECT   17   16    5   30   31                                             
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    2                                                            
CONECT   21    2                                                            
CONECT   22    3                                                            
CONECT   23    3                                                            
CONECT   24    9                                                            
CONECT   25   13                                                            
CONECT   26   14                                                            
CONECT   27   14                                                            
CONECT   28   15                                                            
CONECT   29   16                                                            
CONECT   30   17                                                            
CONECT   31   17                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   64    0
END

RDKit          3D

31 32  0  0  0  0  0  0  0  0999 V2000
    4.0825    1.1941   -1.9484 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3478    0.6175   -0.8373 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1028   -0.8461   -1.0659 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1890   -1.5051    0.3482 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.5552   -0.8081    0.4167 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4036   -1.0649    1.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2536   -1.9817    2.4419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1967   -2.1535    3.2345 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9286   -2.6588    2.6191 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5547   -0.2972    1.0111 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7569    0.4499    1.0931 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6839    0.5751    1.9233 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4147    1.0166   -0.2559 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6417    0.9192   -1.1375 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7078    1.6372   -0.5920 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4734   -0.1431   -0.4636 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0001    0.1935   -0.5606 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8954    0.5777   -2.1750 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4700    1.1813   -2.8084 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4170    1.1654   -0.6802 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9948    0.7317    0.0637 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5078   -0.9484   -2.0012 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0796   -1.3557   -1.1709 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6381   -2.4683    3.2843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9810    2.0168   -0.2500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9823   -0.1540   -1.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3868    1.2903   -2.1571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4574    2.5416   -0.2963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8308   -0.9979   -1.0296 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4295    0.0425   -1.5476 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0872    1.2322   -0.1669 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  6 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 17  5  1  0
 16 10  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  9 24  1  0
 13 25  1  1
 14 26  1  0
 14 27  1  0
 15 28  1  0
 16 29  1  6
 17 30  1  0
 17 31  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(5R,6S)-3-[(2-Aminoethyl)sulfanyl]-6-(hydroxymethyl)-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylate	Generator
(5R,6S)-3-[(2-Aminoethyl)sulphanyl]-6-(hydroxymethyl)-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylate	Generator
(5R,6S)-3-[(2-Aminoethyl)sulphanyl]-6-(hydroxymethyl)-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid	Generator

Chemical Formula

C₁₀H₁₄N₂O₄S

Average Mass

258.2900 Da

Monoisotopic Mass

258.06743 Da

IUPAC Name

(5R,6S)-3-[(2-aminoethyl)sulfanyl]-6-(hydroxymethyl)-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid

Traditional Name

(5R,6S)-3-[(2-aminoethyl)sulfanyl]-6-(hydroxymethyl)-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

NCCSC1=C(N2[C@H](C1)[C@@H](CO)C2=O)C(O)=O

InChI Identifier

InChI=1S/C10H14N2O4S/c11-1-2-17-7-3-6-5(4-13)9(14)12(6)8(7)10(15)16/h5-6,13H,1-4,11H2,(H,15,16)/t5-,6-/m1/s1

InChI Key

CORBMZCTOZNVHZ-PHDIDXHHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces cattleya	NPAtlas	6630073

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2	ALOGPS
logP	-4.7	ChemAxon
logS	-1.6	ALOGPS
pKa (Strongest Acidic)	3.59	ChemAxon
pKa (Strongest Basic)	9.65	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	103.86 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	64.29 m³·mol⁻¹	ChemAxon
Polarizability	25.76 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA020941

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00018525

Chemspider ID

116957

KEGG Compound ID

C17369

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

132448

PDB ID

Not Available

ChEBI ID

81036

Good Scents ID

Not Available

References

General References

Wilson KE, Kempf AJ, Liesch JM, Arison BH: Northienamycin and 8-epi-thienamycin, new carbapenems from Streptomyces cattleya. J Antibiot (Tokyo). 1983 Sep;36(9):1109-17. doi: 10.7164/antibiotics.36.1109. [PubMed:6630073 ]

Showing NP-Card for Northienamycin (NP0021914)

MOL for NP0021914 (Northienamycin)

3D MOL for NP0021914 (Northienamycin)

3D SDF for NP0021914 (Northienamycin)

3D-SDF for NP0021914 (Northienamycin)

PDB for NP0021914 (Northienamycin)

3D PDB for NP0021914 (Northienamycin)

SMILES for NP0021914 (Northienamycin)

INCHI for NP0021914 (Northienamycin)

Structure for NP0021914 (Northienamycin)

3D Structure for NP0021914 (Northienamycin)