NP-MRD: Showing NP-Card for Pentalenolactone (NP0021749)

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Record Information

Version

2.0

Created at

2021-01-06 07:01:19 UTC

Updated at

2021-07-15 17:37:10 UTC

NP-MRD ID

NP0021749

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pentalenolactone

Provided By

NPAtlas

Description

Pentalenolactone is also known as arenaemycin e or PA-132. Pentalenolactone is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Pentalenolactone is found in Streptomyces filipinensis and Unknown-fungus sp.. Pentalenolactone was first documented in 1969 (PMID: 5808206). Based on a literature review a small amount of articles have been published on Pentalenolactone (PMID: 11137857) (PMID: 11440152).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105183D          

 36 39  0  0  0  0            999 V2000
    3.4392   -0.8962   -1.1588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0899   -0.6177   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9791   -1.2824   -0.6824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1167   -0.6810    0.0905 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5727    0.2688    1.0174 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2984    1.4498    1.0259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1974    1.4070    0.0754 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2193    2.4060   -0.2087 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0460    2.3041   -1.1308 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2837    3.5565    0.6008 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0455    0.1562   -0.7211 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3999   -0.5073   -0.7707 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1717   -1.8620   -1.1956 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4733   -2.6279   -0.2398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4055   -3.8783   -0.2700 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8156   -1.8072    0.8213 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1971   -1.8384    2.1699 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0343   -2.5563    1.7100 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8956    0.5359    0.3540 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8908    1.7827   -0.5049 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7830    0.0319   -1.6208 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4077   -1.7648   -1.8141 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1136   -1.1286   -0.3096 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8954   -2.1926   -1.3165 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6893   -0.1206    2.0523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2123    2.2638    1.7327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7595    4.3884    0.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6714    0.3686   -1.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0916    0.0014   -1.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8113   -0.5570    0.2569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0534   -2.5009    2.4768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9402   -1.0292    2.8688 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7036    0.5941    1.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1749    2.6381    0.1405 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    1.7140   -1.3133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9384    1.9813   -0.9924 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  7 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  5 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19  2  1  0  0  0  0
 11  4  1  0  0  0  0
 16 18  1  1  0  0  0
 16  4  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  3 24  1  0  0  0  0
  5 25  1  1  0  0  0
  6 26  1  0  0  0  0
 10 27  1  0  0  0  0
 11 28  1  6  0  0  0
 12 29  1  0  0  0  0
 12 30  1  0  0  0  0
 17 31  1  0  0  0  0
 17 32  1  0  0  0  0
 19 33  1  1  0  0  0
 20 34  1  0  0  0  0
 20 35  1  0  0  0  0
 20 36  1  0  0  0  0
M  END

     RDKit          3D

 36 39  0  0  0  0  0  0  0  0999 V2000
    3.4392   -0.8962   -1.1588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0899   -0.6177   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9791   -1.2824   -0.6824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1167   -0.6810    0.0905 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5727    0.2688    1.0174 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2984    1.4498    1.0259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1974    1.4070    0.0754 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2193    2.4060   -0.2087 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0460    2.3041   -1.1308 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2837    3.5565    0.6008 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0455    0.1562   -0.7211 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3999   -0.5073   -0.7707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1717   -1.8620   -1.1956 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4733   -2.6279   -0.2398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4055   -3.8783   -0.2700 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8156   -1.8072    0.8213 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1971   -1.8384    2.1699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0343   -2.5563    1.7100 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8956    0.5359    0.3540 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8908    1.7827   -0.5049 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7830    0.0319   -1.6208 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4077   -1.7648   -1.8141 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1136   -1.1286   -0.3096 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8954   -2.1926   -1.3165 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6893   -0.1206    2.0523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2123    2.2638    1.7327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7595    4.3884    0.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6714    0.3686   -1.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0916    0.0014   -1.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8113   -0.5570    0.2569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0534   -2.5009    2.4768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9402   -1.0292    2.8688 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7036    0.5941    1.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1749    2.6381    0.1405 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    1.7140   -1.3133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9384    1.9813   -0.9924 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  4  3  1  6
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  7 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
  5 19  1  0
 19 20  1  0
 19  2  1  0
 11  4  1  0
 16 18  1  1
 16  4  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  0
  5 25  1  1
  6 26  1  0
 10 27  1  0
 11 28  1  6
 12 29  1  0
 12 30  1  0
 17 31  1  0
 17 32  1  0
 19 33  1  1
 20 34  1  0
 20 35  1  0
 20 36  1  0
M  END


  Mrv1652306242105183D          

 36 39  0  0  0  0            999 V2000
    3.4392   -0.8962   -1.1588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0899   -0.6177   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9791   -1.2824   -0.6824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1167   -0.6810    0.0905 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5727    0.2688    1.0174 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2984    1.4498    1.0259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1974    1.4070    0.0754 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2193    2.4060   -0.2087 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0460    2.3041   -1.1308 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2837    3.5565    0.6008 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0455    0.1562   -0.7211 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3999   -0.5073   -0.7707 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1717   -1.8620   -1.1956 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4733   -2.6279   -0.2398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4055   -3.8783   -0.2700 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8156   -1.8072    0.8213 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1971   -1.8384    2.1699 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0343   -2.5563    1.7100 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8956    0.5359    0.3540 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8908    1.7827   -0.5049 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7830    0.0319   -1.6208 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4077   -1.7648   -1.8141 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1136   -1.1286   -0.3096 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8954   -2.1926   -1.3165 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6893   -0.1206    2.0523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2123    2.2638    1.7327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7595    4.3884    0.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6714    0.3686   -1.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0916    0.0014   -1.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8113   -0.5570    0.2569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0534   -2.5009    2.4768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9402   -1.0292    2.8688 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7036    0.5941    1.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1749    2.6381    0.1405 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    1.7140   -1.3133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9384    1.9813   -0.9924 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  7 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  5 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19  2  1  0  0  0  0
 11  4  1  0  0  0  0
 16 18  1  1  0  0  0
 16  4  1  0  0  0  0
  1 21  1  0  0  0  0
  1 22  1  0  0  0  0
  1 23  1  0  0  0  0
  3 24  1  0  0  0  0
  5 25  1  1  0  0  0
  6 26  1  0  0  0  0
 10 27  1  0  0  0  0
 11 28  1  6  0  0  0
 12 29  1  0  0  0  0
 12 30  1  0  0  0  0
 17 31  1  0  0  0  0
 17 32  1  0  0  0  0
 19 33  1  1  0  0  0
 20 34  1  0  0  0  0
 20 35  1  0  0  0  0
 20 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021749

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C1=C([H])[C@]2([H])[C@@]([H])(C(=C([H])[C@]22[C@@]1([H])C([H])([H])OC(=O)[C@@]21OC1([H])[H])C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H16O5/c1-7-4-14-10(8(7)2)3-9(12(16)17)11(14)5-19-13(18)15(14)6-20-15/h3-4,8,10-11H,5-6H2,1-2H3,(H,16,17)/t8-,10-,11+,14-,15-/m1/s1

> <INCHI_KEY>
NUPNVWUYFVEAIT-UJJBCWTCSA-N

> <FORMULA>
C15H16O5

> <MOLECULAR_WEIGHT>
276.288

> <EXACT_MASS>
276.099773615

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
27.175689582551193

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1'S,2R,4'S,5'R,8'R)-3',4'-dimethyl-11'-oxo-10'-oxaspiro[oxirane-2,12'-tricyclo[6.4.0.0^{1,5}]dodecane]-2',6'-diene-7'-carboxylic acid

> <ALOGPS_LOGP>
1.81

> <JCHEM_LOGP>
0.8688555906666671

> <ALOGPS_LOGS>
-2.33

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.2304670551059615

> <JCHEM_PKA_STRONGEST_BASIC>
-4.283929695861517

> <JCHEM_POLAR_SURFACE_AREA>
76.13

> <JCHEM_REFRACTIVITY>
69.6987

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.31e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'S,2R,4'S,5'R,8'R)-3',4'-dimethyl-11'-oxo-10'-oxaspiro[oxirane-2,12'-tricyclo[6.4.0.0^{1,5}]dodecane]-2',6'-diene-7'-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 36 39  0  0  0  0  0  0  0  0999 V2000
    3.4392   -0.8962   -1.1588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0899   -0.6177   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9791   -1.2824   -0.6824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1167   -0.6810    0.0905 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5727    0.2688    1.0174 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2984    1.4498    1.0259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1974    1.4070    0.0754 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2193    2.4060   -0.2087 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0460    2.3041   -1.1308 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2837    3.5565    0.6008 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0455    0.1562   -0.7211 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3999   -0.5073   -0.7707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1717   -1.8620   -1.1956 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4733   -2.6279   -0.2398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4055   -3.8783   -0.2700 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8156   -1.8072    0.8213 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1971   -1.8384    2.1699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0343   -2.5563    1.7100 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8956    0.5359    0.3540 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8908    1.7827   -0.5049 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7830    0.0319   -1.6208 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4077   -1.7648   -1.8141 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1136   -1.1286   -0.3096 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8954   -2.1926   -1.3165 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6893   -0.1206    2.0523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2123    2.2638    1.7327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7595    4.3884    0.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6714    0.3686   -1.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0916    0.0014   -1.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8113   -0.5570    0.2569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0534   -2.5009    2.4768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9402   -1.0292    2.8688 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7036    0.5941    1.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1749    2.6381    0.1405 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    1.7140   -1.3133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9384    1.9813   -0.9924 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  4  3  1  6
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  7 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
  5 19  1  0
 19 20  1  0
 19  2  1  0
 11  4  1  0
 16 18  1  1
 16  4  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  0
  5 25  1  1
  6 26  1  0
 10 27  1  0
 11 28  1  6
 12 29  1  0
 12 30  1  0
 17 31  1  0
 17 32  1  0
 19 33  1  1
 20 34  1  0
 20 35  1  0
 20 36  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       3.439  -0.896  -1.159  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.090  -0.618  -0.542  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.979  -1.282  -0.682  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.117  -0.681   0.091  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.573   0.269   1.017  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.298   1.450   1.026  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.197   1.407   0.075  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.219   2.406  -0.209  0.00  0.00           C+0
HETATM    9  O   UNK     0      -3.046   2.304  -1.131  0.00  0.00           O+0
HETATM   10  O   UNK     0      -2.284   3.557   0.601  0.00  0.00           O+0
HETATM   11  C   UNK     0      -1.046   0.156  -0.721  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.400  -0.507  -0.771  0.00  0.00           C+0
HETATM   13  O   UNK     0      -2.172  -1.862  -1.196  0.00  0.00           O+0
HETATM   14  C   UNK     0      -1.473  -2.628  -0.240  0.00  0.00           C+0
HETATM   15  O   UNK     0      -1.406  -3.878  -0.270  0.00  0.00           O+0
HETATM   16  C   UNK     0      -0.816  -1.807   0.821  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.197  -1.838   2.170  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.034  -2.556   1.710  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.896   0.536   0.354  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.891   1.783  -0.505  0.00  0.00           C+0
HETATM   21  H   UNK     0       3.783   0.032  -1.621  0.00  0.00           H+0
HETATM   22  H   UNK     0       3.408  -1.765  -1.814  0.00  0.00           H+0
HETATM   23  H   UNK     0       4.114  -1.129  -0.310  0.00  0.00           H+0
HETATM   24  H   UNK     0       0.895  -2.193  -1.317  0.00  0.00           H+0
HETATM   25  H   UNK     0       0.689  -0.121   2.052  0.00  0.00           H+0
HETATM   26  H   UNK     0      -0.212   2.264   1.733  0.00  0.00           H+0
HETATM   27  H   UNK     0      -2.760   4.388   0.277  0.00  0.00           H+0
HETATM   28  H   UNK     0      -0.671   0.369  -1.745  0.00  0.00           H+0
HETATM   29  H   UNK     0      -3.092   0.001  -1.473  0.00  0.00           H+0
HETATM   30  H   UNK     0      -2.811  -0.557   0.257  0.00  0.00           H+0
HETATM   31  H   UNK     0      -2.053  -2.501   2.477  0.00  0.00           H+0
HETATM   32  H   UNK     0      -0.940  -1.029   2.869  0.00  0.00           H+0
HETATM   33  H   UNK     0       2.704   0.594   1.127  0.00  0.00           H+0
HETATM   34  H   UNK     0       2.175   2.638   0.141  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.671   1.714  -1.313  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.938   1.981  -0.992  0.00  0.00           H+0
CONECT    1    2   21   22   23                                             
CONECT    2    1    3   19                                                  
CONECT    3    2    4   24                                                  
CONECT    4    3    5   11   16                                             
CONECT    5    4    6   19   25                                             
CONECT    6    5    7   26                                                  
CONECT    7    6    8   11                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   27                                                       
CONECT   11    7   12    4   28                                             
CONECT   12   11   13   29   30                                             
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   18    4                                             
CONECT   17   16   18   31   32                                             
CONECT   18   17   16                                                       
CONECT   19    5   20    2   33                                             
CONECT   20   19   34   35   36                                             
CONECT   21    1                                                            
CONECT   22    1                                                            
CONECT   23    1                                                            
CONECT   24    3                                                            
CONECT   25    5                                                            
CONECT   26    6                                                            
CONECT   27   10                                                            
CONECT   28   11                                                            
CONECT   29   12                                                            
CONECT   30   12                                                            
CONECT   31   17                                                            
CONECT   32   17                                                            
CONECT   33   19                                                            
CONECT   34   20                                                            
CONECT   35   20                                                            
CONECT   36   20                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   78    0
END

RDKit          3D

36 39  0  0  0  0  0  0  0  0999 V2000
    3.4392   -0.8962   -1.1588 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0899   -0.6177   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9791   -1.2824   -0.6824 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1167   -0.6810    0.0905 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5727    0.2688    1.0174 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2984    1.4498    1.0259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1974    1.4070    0.0754 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2193    2.4060   -0.2087 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0460    2.3041   -1.1308 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2837    3.5565    0.6008 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0455    0.1562   -0.7211 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3999   -0.5073   -0.7707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1717   -1.8620   -1.1956 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4733   -2.6279   -0.2398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4055   -3.8783   -0.2700 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8156   -1.8072    0.8213 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1971   -1.8384    2.1699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0343   -2.5563    1.7100 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8956    0.5359    0.3540 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8908    1.7827   -0.5049 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7830    0.0319   -1.6208 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4077   -1.7648   -1.8141 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1136   -1.1286   -0.3096 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8954   -2.1926   -1.3165 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6893   -0.1206    2.0523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2123    2.2638    1.7327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7595    4.3884    0.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6714    0.3686   -1.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0916    0.0014   -1.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8113   -0.5570    0.2569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0534   -2.5009    2.4768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9402   -1.0292    2.8688 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7036    0.5941    1.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1749    2.6381    0.1405 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6709    1.7140   -1.3133 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9384    1.9813   -0.9924 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  4  3  1  6
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  7 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
  5 19  1  0
 19 20  1  0
 19  2  1  0
 11  4  1  0
 16 18  1  1
 16  4  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  0
  5 25  1  1
  6 26  1  0
 10 27  1  0
 11 28  1  6
 12 29  1  0
 12 30  1  0
 17 31  1  0
 17 32  1  0
 19 33  1  1
 20 34  1  0
 20 35  1  0
 20 36  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Arenaemycin e	ChEBI
Arenemycine	ChEBI
PA-132	ChEBI

Chemical Formula

C₁₅H₁₆O₅

Average Mass

276.2880 Da

Monoisotopic Mass

276.09977 Da

IUPAC Name

(1'S,2R,4'S,5'R,8'R)-3',4'-dimethyl-11'-oxo-10'-oxaspiro[oxirane-2,12'-tricyclo[6.4.0.0^{1,5}]dodecane]-2',6'-diene-7'-carboxylic acid

Traditional Name

(1'S,2R,4'S,5'R,8'R)-3',4'-dimethyl-11'-oxo-10'-oxaspiro[oxirane-2,12'-tricyclo[6.4.0.0^{1,5}]dodecane]-2',6'-diene-7'-carboxylic acid

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2C=C([C@@H]3COC(=O)[C@]4(CO4)[C@]23C=C1C)C(O)=O

InChI Identifier

InChI=1S/C15H16O5/c1-7-4-14-10(8(7)2)3-9(12(16)17)11(14)5-19-13(18)15(14)6-20-15/h3-4,8,10-11H,5-6H2,1-2H3,(H,16,17)/t8-,10-,11+,14-,15-/m1/s1

InChI Key

NUPNVWUYFVEAIT-UJJBCWTCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces filipinensis	LOTUS Database	35616633
Unknown-fungus sp.	NPAtlas	5808206

Species Where Detected

Species Name	Source	Reference
Streptomyces sp. AA-57 spp.	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.81	ALOGPS
logP	0.87	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	4.23	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	76.13 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	69.7 m³·mol⁻¹	ChemAxon
Polarizability	27.18 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA014531

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

24199350

PDB ID

Not Available

ChEBI ID

70816

Good Scents ID

Not Available

References

General References

Takeuchi S, Ogawa Y, Yonehara H: The structure of pentalenolactone (PA-132). Tetrahedron Lett. 1969 Jul;(32):2737-40. doi: 10.1016/s0040-4039(01)88256-3. [PubMed:5808206 ]
Ikeda M, Fukuda A, Takagi M, Morita M, Shimada Y: Inhibitory effect of pentalenolactone on vascular smooth muscle cell proliferation. Eur J Pharmacol. 2001 Jan 5;411(1-2):45-53. doi: 10.1016/s0014-2999(00)00894-3. [PubMed:11137857 ]
Uyeda M, Mizukami M, Yokomizo K, Suzuki K: Pentalenolactone I and hygromycin A, immunosuppressants produced by Streptomyces filipinensis and Streptomyces hygroscopicus. Biosci Biotechnol Biochem. 2001 May;65(5):1252-4. doi: 10.1271/bbb.65.1252. [PubMed:11440152 ]

Showing NP-Card for Pentalenolactone (NP0021749)

MOL for NP0021749 (Pentalenolactone)

3D MOL for NP0021749 (Pentalenolactone)

3D SDF for NP0021749 (Pentalenolactone)

3D-SDF for NP0021749 (Pentalenolactone)

PDB for NP0021749 (Pentalenolactone)

3D PDB for NP0021749 (Pentalenolactone)

SMILES for NP0021749 (Pentalenolactone)

INCHI for NP0021749 (Pentalenolactone)

Structure for NP0021749 (Pentalenolactone)

3D Structure for NP0021749 (Pentalenolactone)