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Record Information
Version2.0
Created at2021-01-06 07:00:22 UTC
Updated at2021-07-15 17:37:07 UTC
NP-MRD IDNP0021730
Secondary Accession NumbersNone
Natural Product Identification
Common NameDetoxin C1
Provided ByNPAtlasNPAtlas Logo
Description(3S)-3-[(2S,3R)-3-(acetyloxy)-1-[(2S)-2-amino-3-methylbutanoyl]pyrrolidin-2-yl]-3-{[(2S)-2-[(1-hydroxyethylidene)amino]-3-phenylpropanoyl]oxy}propanoic acid belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond. Detoxin C1 is found in Streptomyces and Streptomyces caespitosus. Detoxin C1 was first documented in 1968 (PMID: 5726294). Based on a literature review very few articles have been published on (3S)-3-[(2S,3R)-3-(acetyloxy)-1-[(2S)-2-amino-3-methylbutanoyl]pyrrolidin-2-yl]-3-{[(2S)-2-[(1-hydroxyethylidene)amino]-3-phenylpropanoyl]oxy}propanoic acid.
Structure
Data?1624506919
Synonyms
ValueSource
(3S)-3-[(2S,3R)-3-(Acetyloxy)-1-[(2S)-2-amino-3-methylbutanoyl]pyrrolidin-2-yl]-3-{[(2S)-2-[(1-hydroxyethylidene)amino]-3-phenylpropanoyl]oxy}propanoateGenerator
Chemical FormulaC25H35N3O8
Average Mass505.5680 Da
Monoisotopic Mass505.24242 Da
IUPAC Name3-[(2S,3R)-3-(acetyloxy)-1-[(2S)-2-amino-3-methylbutanoyl]pyrrolidin-2-yl]-3-{[(2S)-2-acetamido-3-phenylpropanoyl]oxy}propanoic acid
Traditional Name3-[(2S,3R)-3-(acetyloxy)-1-[(2S)-2-amino-3-methylbutanoyl]pyrrolidin-2-yl]-3-{[(2S)-2-acetamido-3-phenylpropanoyl]oxy}propanoic acid
CAS Registry NumberNot Available
SMILES
CC(C)[C@H](N)C(=O)N1CC[C@@H](OC(C)=O)[C@H]1[C@H](CC(O)=O)OC(=O)[C@H](CC1=CC=CC=C1)NC(C)=O
InChI Identifier
InChI=1S/C25H35N3O8/c1-14(2)22(26)24(33)28-11-10-19(35-16(4)30)23(28)20(13-21(31)32)36-25(34)18(27-15(3)29)12-17-8-6-5-7-9-17/h5-9,14,18-20,22-23H,10-13,26H2,1-4H3,(H,27,29)(H,31,32)/t18-,19+,20-,22-,23-/m0/s1
InChI KeyWVEVNNJWNJDGSX-QWCYLASJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces caespitosusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassHybrid peptides
Direct ParentHybrid peptides
Alternative Parents
Substituents
  • Hybrid peptide
  • Phenylalanine or derivatives
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid ester
  • Valine or derivatives
  • Alpha-amino acid amide
  • Amphetamine or derivatives
  • Alpha-amino acid or derivatives
  • Tricarboxylic acid or derivatives
  • N-acylpyrrolidine
  • Fatty acid ester
  • Monocyclic benzene moiety
  • Fatty acyl
  • Benzenoid
  • Acetamide
  • Pyrrolidine
  • Tertiary carboxylic acid amide
  • Amino acid or derivatives
  • Amino acid
  • Carboxamide group
  • Carboxylic acid ester
  • Secondary carboxylic acid amide
  • Azacycle
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organoheterocyclic compound
  • Primary aliphatic amine
  • Hydrocarbon derivative
  • Amine
  • Organopnictogen compound
  • Carbonyl group
  • Organic oxygen compound
  • Organic oxide
  • Organic nitrogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Primary amine
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.79ALOGPS
logP-1.9ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)3.92ChemAxon
pKa (Strongest Basic)8.51ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area165.33 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity126.6 m³·mol⁻¹ChemAxon
Polarizability52.84 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA021234
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID16735772
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound20054889
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Otake N, Kakinuma K, Yonehara H: Separation of detoxin complex and characterization of two active principles, detoxin C1 and D1. J Antibiot (Tokyo). 1968 May;21(5):371-3. doi: 10.7164/antibiotics.21.371. [PubMed:5726294 ]