NP-MRD: Showing NP-Card for Borrelidin (NP0021679)

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Record Information

Version

2.0

Created at

2021-01-06 06:57:21 UTC

Updated at

2024-09-12 20:07:25 UTC

NP-MRD ID

NP0021679

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Borrelidin

Provided By

NPAtlas

Description

Borrelidin belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. Borrelidin is found in Saccharopolyspora erythrea, Streptomyces albovinaceus, Streptomyces heilongjiangensis, Streptomyces mutabilis, Streptomyces neyagawaensis, Streptomyces parvulus and Streptomyces rochei. Borrelidin was first documented in 1967 (PMID: 5584833). Based on a literature review a small amount of articles have been published on Borrelidin (PMID: 39277409) (PMID: 39057412) (PMID: 39014102) (PMID: 38129981).

Structure

MOL SDF PDB SMILES InChI

NP0021679
  Mrv2104 05272322393D          

 78 79  0  0  0  0            999 V2000
   -3.6155   -2.2374    1.6288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8990   -2.0466    0.2796 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7039   -3.0405    0.2349 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0785   -3.3275   -1.1546 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1450   -3.7704   -2.1697 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0411   -4.4141   -1.0452 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4659   -4.8391   -2.3444 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2869   -4.0316   -0.2288 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9576   -2.8126   -0.8031 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9351   -2.5143   -1.9925 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5284   -2.0614    0.1810 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8273   -0.6890   -0.1978 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9447   -0.1844    0.7341 C   0  0  2  0  0  0  0  0  0  0  0  0
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    4.7521    0.8216    2.7319 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1189    1.7831    1.6041 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6039    1.1412    0.3027 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7203    0.9251   -0.6955 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0701   -0.1310   -1.1955 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3171    2.0795   -1.0551 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4805    0.0530   -0.1278 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -0.8778    4.1900   -0.9115 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.8588    3.9731    0.2329 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2297    4.4377    1.4370 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5025    2.6116    1.5773 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8924    1.8143   -0.7820 C   0  0  1  0  0  0  0  0  0  0  0  0
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   -4.4327   -1.5261    1.7621 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.1965    1.9871    1.6064 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.8769    1.8089   -0.1727 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9866    1.8055   -1.7184 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7209   -0.5994   -0.5781 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1370    0.1485    0.9102 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5433    1.2886   -1.9535 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4879    2.4053    0.7126 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8435    3.7198   -2.0435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7309    4.6219    0.0768 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9786    5.3676    1.3012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6032    1.9430    0.9551 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4383    2.9984    1.1600 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2120    3.2610    2.4079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6909    1.6291    2.0175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6592    2.4320   -1.2678 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0548    1.7830   -1.4896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4069   -0.0313   -1.7101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0150    0.4772    0.8189 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.2644   -0.1573    1.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4881   -0.5435   -0.4062 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
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  6  8  1  0  0  0  0
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  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
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 13 14  1  0  0  0  0
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 25 28  1  0  0  0  0
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 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 35  2  1  0  0  0  0
 17 13  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
  1 38  1  0  0  0  0
  2 39  1  6  0  0  0
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 35 77  1  0  0  0  0
 35 78  1  0  0  0  0
M  END

NP0021679
  Mrv2104 05272322393D          

 78 79  0  0  0  0            999 V2000
   -3.6155   -2.2374    1.6288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8990   -2.0466    0.2796 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7039   -3.0405    0.2349 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0785   -3.3275   -1.1546 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1450   -3.7704   -2.1697 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0411   -4.4141   -1.0452 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4659   -4.8391   -2.3444 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2869   -4.0316   -0.2288 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9576   -2.8126   -0.8031 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9351   -2.5143   -1.9925 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5284   -2.0614    0.1810 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8273   -0.6890   -0.1978 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9447   -0.1844    0.7341 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5494    0.0631    2.1928 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7521    0.8216    2.7319 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1189    1.7831    1.6041 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6039    1.1412    0.3027 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7203    0.9251   -0.6955 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.0150    0.4772    0.8189 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3020   -0.7016   -0.4563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4780    1.0113   -0.8014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2644   -0.1573    1.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4881   -0.5435   -0.4062 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 12 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  3  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 35  2  1  0  0  0  0
 17 13  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
  1 38  1  0  0  0  0
  2 39  1  6  0  0  0
  3 40  1  0  0  0  0
  3 41  1  0  0  0  0
  4 42  1  6  0  0  0
  5 43  1  0  0  0  0
  5 44  1  0  0  0  0
  5 45  1  0  0  0  0
  6 46  1  1  0  0  0
  7 47  1  0  0  0  0
  8 48  1  0  0  0  0
  8 49  1  0  0  0  0
 12 50  1  6  0  0  0
 13 51  1  1  0  0  0
 14 52  1  0  0  0  0
 14 53  1  0  0  0  0
 15 54  1  0  0  0  0
 15 55  1  0  0  0  0
 16 56  1  0  0  0  0
 16 57  1  0  0  0  0
 17 58  1  6  0  0  0
 20 59  1  0  0  0  0
 21 60  1  0  0  0  0
 21 61  1  0  0  0  0
 22 62  1  0  0  0  0
 23 63  1  0  0  0  0
 24 64  1  0  0  0  0
 28 65  1  6  0  0  0
 29 66  1  0  0  0  0
 30 67  1  1  0  0  0
 31 68  1  0  0  0  0
 31 69  1  0  0  0  0
 31 70  1  0  0  0  0
 32 71  1  0  0  0  0
 32 72  1  0  0  0  0
 33 73  1  6  0  0  0
 34 74  1  0  0  0  0
 34 75  1  0  0  0  0
 34 76  1  0  0  0  0
 35 77  1  0  0  0  0
 35 78  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021679

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@]1([H])C([H])([H])C([H])([H])C([H])([H])[C@@]1([H])[C@@]1([H])OC(=O)C([H])([H])[C@]([H])(O[H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])\C(C#N)=C(\[H])/C(/[H])=C([H])/C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1/C28H43NO6/c1-17-12-18(2)14-20(4)27(32)21(16-29)8-5-6-11-25(22-9-7-10-23(22)28(33)34)35-26(31)15-24(30)19(3)13-17/h5-6,8,17-20,22-25,27,30,32H,7,9-15H2,1-4H3,(H,33,34)/b6-5+,21-8-/t17-,18+,19-,20-,22+,23+,24-,25-,27+/s2

> <INCHI_KEY>
OJCKRNPLOZHAOU-PVGNPWONNA-N

> <FORMULA>
C28H43NO6

> <MOLECULAR_WEIGHT>
489.653

> <EXACT_MASS>
489.309038109

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
78

> <JCHEM_AVERAGE_POLARIZABILITY>
54.761632258473284

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2R)-2-[(2S,4E,6Z,8R,9S,11R,13S,15S,16S)-7-cyano-8,16-dihydroxy-9,11,13,15-tetramethyl-18-oxo-1-oxacyclooctadeca-4,6-dien-2-yl]cyclopentane-1-carboxylic acid

> <JCHEM_LOGP>
4.659357939333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.698482800037006

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.8741594427926027

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9329410031715684

> <JCHEM_POLAR_SURFACE_AREA>
127.85000000000001

> <JCHEM_REFRACTIVITY>
135.45829999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
borrelidin

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-MAY-23   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: NP0021679                                         
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-MAY-23         0                                  
HETATM    1  C   UNK     0      -3.615  -2.237   1.629  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.899  -2.047   0.280  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.704  -3.041   0.235  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.079  -3.328  -1.155  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.145  -3.770  -2.170  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.041  -4.414  -1.045  0.00  0.00           C+0
HETATM    7  O   UNK     0       0.466  -4.839  -2.344  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.287  -4.032  -0.229  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.958  -2.813  -0.803  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.935  -2.514  -1.992  0.00  0.00           O+0
HETATM   11  O   UNK     0       2.528  -2.061   0.181  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.827  -0.689  -0.198  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.945  -0.184   0.734  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.549   0.063   2.193  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.752   0.822   2.732  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.119   1.783   1.604  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.604   1.141   0.303  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.720   0.925  -0.696  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.070  -0.131  -1.196  0.00  0.00           O+0
HETATM   20  O   UNK     0       6.317   2.079  -1.055  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.480   0.053  -0.128  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.341   1.336  -0.887  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.741   2.404  -0.345  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.258   3.498  -1.150  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.878   4.190  -0.912  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.229   5.217  -1.845  0.00  0.00           C+0
HETATM   27  N   UNK     0      -1.520   6.057  -2.590  0.00  0.00           N+0
HETATM   28  C   UNK     0      -1.859   3.973   0.233  0.00  0.00           C+0
HETATM   29  O   UNK     0      -1.230   4.438   1.437  0.00  0.00           O+0
HETATM   30  C   UNK     0      -2.407   2.531   0.504  0.00  0.00           C+0
HETATM   31  C   UNK     0      -3.502   2.612   1.577  0.00  0.00           C+0
HETATM   32  C   UNK     0      -2.892   1.814  -0.782  0.00  0.00           C+0
HETATM   33  C   UNK     0      -3.410   0.348  -0.678  0.00  0.00           C+0
HETATM   34  C   UNK     0      -4.876   0.285  -0.245  0.00  0.00           C+0
HETATM   35  C   UNK     0      -2.449  -0.574   0.117  0.00  0.00           C+0
HETATM   36  H   UNK     0      -4.433  -1.526   1.762  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.046  -3.241   1.693  0.00  0.00           H+0
HETATM   38  H   UNK     0      -2.923  -2.112   2.468  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.616  -2.305  -0.505  0.00  0.00           H+0
HETATM   40  H   UNK     0      -0.925  -2.671   0.915  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.039  -4.002   0.649  0.00  0.00           H+0
HETATM   42  H   UNK     0      -0.644  -2.405  -1.552  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.857  -2.965  -2.376  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.700  -4.030  -3.135  0.00  0.00           H+0
HETATM   45  H   UNK     0      -2.701  -4.641  -1.805  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.396  -5.305  -0.577  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.855  -4.058  -2.793  0.00  0.00           H+0
HETATM   48  H   UNK     0       2.024  -4.842  -0.251  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.010  -3.844   0.812  0.00  0.00           H+0
HETATM   50  H   UNK     0       3.214  -0.676  -1.224  0.00  0.00           H+0
HETATM   51  H   UNK     0       4.712  -0.975   0.756  0.00  0.00           H+0
HETATM   52  H   UNK     0       3.369  -0.867   2.741  0.00  0.00           H+0
HETATM   53  H   UNK     0       2.661   0.698   2.281  0.00  0.00           H+0
HETATM   54  H   UNK     0       4.530   1.345   3.667  0.00  0.00           H+0
HETATM   55  H   UNK     0       5.583   0.130   2.918  0.00  0.00           H+0
HETATM   56  H   UNK     0       6.197   1.987   1.606  0.00  0.00           H+0
HETATM   57  H   UNK     0       4.604   2.739   1.758  0.00  0.00           H+0
HETATM   58  H   UNK     0       3.877   1.809  -0.173  0.00  0.00           H+0
HETATM   59  H   UNK     0       6.987   1.806  -1.718  0.00  0.00           H+0
HETATM   60  H   UNK     0       0.721  -0.599  -0.578  0.00  0.00           H+0
HETATM   61  H   UNK     0       1.137   0.149   0.910  0.00  0.00           H+0
HETATM   62  H   UNK     0       1.543   1.289  -1.954  0.00  0.00           H+0
HETATM   63  H   UNK     0       0.488   2.405   0.713  0.00  0.00           H+0
HETATM   64  H   UNK     0       0.844   3.720  -2.043  0.00  0.00           H+0
HETATM   65  H   UNK     0      -2.731   4.622   0.077  0.00  0.00           H+0
HETATM   66  H   UNK     0      -0.979   5.368   1.301  0.00  0.00           H+0
HETATM   67  H   UNK     0      -1.603   1.943   0.955  0.00  0.00           H+0
HETATM   68  H   UNK     0      -4.438   2.998   1.160  0.00  0.00           H+0
HETATM   69  H   UNK     0      -3.212   3.261   2.408  0.00  0.00           H+0
HETATM   70  H   UNK     0      -3.691   1.629   2.018  0.00  0.00           H+0
HETATM   71  H   UNK     0      -3.659   2.432  -1.268  0.00  0.00           H+0
HETATM   72  H   UNK     0      -2.055   1.783  -1.490  0.00  0.00           H+0
HETATM   73  H   UNK     0      -3.407  -0.031  -1.710  0.00  0.00           H+0
HETATM   74  H   UNK     0      -5.015   0.477   0.819  0.00  0.00           H+0
HETATM   75  H   UNK     0      -5.302  -0.702  -0.456  0.00  0.00           H+0
HETATM   76  H   UNK     0      -5.478   1.011  -0.801  0.00  0.00           H+0
HETATM   77  H   UNK     0      -2.264  -0.157   1.113  0.00  0.00           H+0
HETATM   78  H   UNK     0      -1.488  -0.544  -0.406  0.00  0.00           H+0
CONECT    1    2   36   37   38                                             
CONECT    2    1    3   35   39                                             
CONECT    3    2    4   40   41                                             
CONECT    4    3    5    6   42                                             
CONECT    5    4   43   44   45                                             
CONECT    6    4    7    8   46                                             
CONECT    7    6   47                                                       
CONECT    8    6    9   48   49                                             
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   21   50                                             
CONECT   13   12   14   17   51                                             
CONECT   14   13   15   52   53                                             
CONECT   15   14   16   54   55                                             
CONECT   16   15   17   56   57                                             
CONECT   17   16   18   13   58                                             
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   59                                                       
CONECT   21   12   22   60   61                                             
CONECT   22   21   23   62                                                  
CONECT   23   22   24   63                                                  
CONECT   24   23   25   64                                                  
CONECT   25   24   26   28                                                  
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28   25   29   30   65                                             
CONECT   29   28   66                                                       
CONECT   30   28   31   32   67                                             
CONECT   31   30   68   69   70                                             
CONECT   32   30   33   71   72                                             
CONECT   33   32   34   35   73                                             
CONECT   34   33   74   75   76                                             
CONECT   35   33    2   77   78                                             
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    2                                                            
CONECT   40    3                                                            
CONECT   41    3                                                            
CONECT   42    4                                                            
CONECT   43    5                                                            
CONECT   44    5                                                            
CONECT   45    5                                                            
CONECT   46    6                                                            
CONECT   47    7                                                            
CONECT   48    8                                                            
CONECT   49    8                                                            
CONECT   50   12                                                            
CONECT   51   13                                                            
CONECT   52   14                                                            
CONECT   53   14                                                            
CONECT   54   15                                                            
CONECT   55   15                                                            
CONECT   56   16                                                            
CONECT   57   16                                                            
CONECT   58   17                                                            
CONECT   59   20                                                            
CONECT   60   21                                                            
CONECT   61   21                                                            
CONECT   62   22                                                            
CONECT   63   23                                                            
CONECT   64   24                                                            
CONECT   65   28                                                            
CONECT   66   29                                                            
CONECT   67   30                                                            
CONECT   68   31                                                            
CONECT   69   31                                                            
CONECT   70   31                                                            
CONECT   71   32                                                            
CONECT   72   32                                                            
CONECT   73   33                                                            
CONECT   74   34                                                            
CONECT   75   34                                                            
CONECT   76   34                                                            
CONECT   77   35                                                            
CONECT   78   35                                                            
MASTER        0    0    0    0    0    0    0    0   78    0  158    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₄₃NO₆

Average Mass

489.6530 Da

Monoisotopic Mass

489.30904 Da

IUPAC Name

(1R,2R)-2-[(2S,4E,6Z,8R,9S,11R,13S,15S,16S)-7-cyano-8,16-dihydroxy-9,11,13,15-tetramethyl-18-oxo-1-oxacyclooctadeca-4,6-dien-2-yl]cyclopentane-1-carboxylic acid

Traditional Name

borrelidin

CAS Registry Number

Not Available

SMILES

[H]OC(=O)[C@]1([H])C([H])([H])C([H])([H])C([H])([H])[C@@]1([H])[C@@]1([H])OC(=O)C([H])([H])[C@]([H])(O[H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@@]([H])(C([H])([H])[H])C([H])([H])[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])\C(C#N)=C(\[H])/C(/[H])=C([H])/C1([H])[H]

InChI Identifier

InChI=1/C28H43NO6/c1-17-12-18(2)14-20(4)27(32)21(16-29)8-5-6-11-25(22-9-7-10-23(22)28(33)34)35-26(31)15-24(30)19(3)13-17/h5-6,8,17-20,22-25,27,30,32H,7,9-15H2,1-4H3,(H,33,34)/b6-5+,21-8-/t17-,18+,19-,20-,22+,23+,24-,25-,27+/s2

InChI Key

OJCKRNPLOZHAOU-PVGNPWONNA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Saccharopolyspora erythrea	--	KNApSAcK
Streptomyces albovinaceus	LOTUS Database	35616633
Streptomyces heilongjiangensis	LOTUS Database	35616633
Streptomyces mutabilis	LOTUS Database	35616633
Streptomyces neyagawaensis	LOTUS Database	35616633
Streptomyces parvulus	LOTUS Database	35616633
Streptomyces rochei	NPAtlas	5584833

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Macrolides and analogues

Sub Class

Not Available

Direct Parent

Macrolides and analogues

Alternative Parents

Substituents

Macrolide
Dicarboxylic acid or derivatives
Carboxylic acid ester
Lactone
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Carbonitrile
Nitrile
Organoheterocyclic compound
Oxacycle
Carbonyl group
Organic oxide
Cyanide
Organic oxygen compound
Alcohol
Organonitrogen compound
Organooxygen compound
Hydrocarbon derivative
Organic nitrogen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.66	ChemAxon
pKa (Strongest Acidic)	3.87	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	127.85 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	135.46 m³·mol⁻¹	ChemAxon
Polarizability	54.76 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA011087

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00047195

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Borrelidin

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Keller-Schierlein W: [Metabolic products of microorganisms. Concerning the constitution of borrelidin]. Helv Chim Acta. 1967 Apr 20;50(3):731-53. doi: 10.1002/hlca.19670500303. [PubMed:5584833 ]
Wang J, Shi Z, Wu Z, Wang H, Qi H, Sheng Q, Zhang S, Song J, Wang J, Zhang L, Cheng C: Molluscicidal activity and biochemical impacts of borrelidins against an aquatic invasive snail Pomacea canaliculata for crop protection. Pestic Biochem Physiol. 2024 Sep;204:106105. doi: 10.1016/j.pestbp.2024.106105. Epub 2024 Aug 28. [PubMed:39277409 ]
Liu T, Gui X, Zhang G, Luo L, Zhao J: Streptomyces-Fungus Co-Culture Enhances the Production of Borrelidin and Analogs: A Genomic and Metabolomic Approach. Mar Drugs. 2024 Jun 28;22(7):302. doi: 10.3390/md22070302. [PubMed:39057412 ]
Qiao H, Wang Z, Yang H, Xia M, Yang G, Bai F, Wang J, Fang P: Specific glycine-dependent enzyme motion determines the potency of conformation selective inhibitors of threonyl-tRNA synthetase. Commun Biol. 2024 Jul 16;7(1):867. doi: 10.1038/s42003-024-06559-x. [PubMed:39014102 ]
Gillon A, Abdelrahman O, Abou-Mansour E, L'Haridon F, Falquet L, Allard PM, Weisskopf L: Comparative genomic and metabolomic study of three Streptomyces sp. differing in biological activity. Microbiologyopen. 2023 Dec;12(6):e1389. doi: 10.1002/mbo3.1389. [PubMed:38129981 ]

Showing NP-Card for Borrelidin (NP0021679)

MOL for NP0021679 (Borrelidin)

3D MOL for NP0021679 (Borrelidin)

3D SDF for NP0021679 (Borrelidin)

3D-SDF for NP0021679 (Borrelidin)

PDB for NP0021679 (Borrelidin)

3D PDB for NP0021679 (Borrelidin)

SMILES for NP0021679 (Borrelidin)

INCHI for NP0021679 (Borrelidin)

Structure for NP0021679 (Borrelidin)

3D Structure for NP0021679 (Borrelidin)