NP-MRD: Showing NP-Card for Narbomycin (NP0021627)

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Record Information

Version

2.0

Created at

2021-01-06 06:54:32 UTC

Updated at

2021-07-15 17:36:51 UTC

NP-MRD ID

NP0021627

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Narbomycin

Provided By

NPAtlas

Description

Narbomycin is found in Streptomyces felleus, Streptomyces flavochromogenes, Streptomyces narbonensis, Streptomyces venezuelae, Streptomyces zaomyceticus and Unknown-fungus sp.. Narbomycin was first documented in 1970 (PMID: 5439233).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042108003D          

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M  END

     RDKit          3D

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   -2.0393   -0.1333   -1.8335 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3531    2.7459   -0.9210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7827    2.8716   -2.2752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8579    1.2205    0.0098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6381    2.7748    1.6397 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1248    4.0969    0.5538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4133    3.6101    0.5935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3052    1.8069   -2.6620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7305    0.7326   -1.1456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8607    1.8379    1.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0624    1.9021    2.3587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8221    1.7940    0.6828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6943    3.1520    1.0539 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  1  0
 20 24  1  0
 24 25  1  0
 13 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 29 30  1  0
 29 31  1  0
 31 32  2  0
 31 33  1  0
 33 34  2  0
 34 35  1  0
 35 36  1  0
 35  3  1  0
 24 15  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  2 40  1  0
  2 41  1  0
  3 42  1  1
  7 43  1  6
  8 44  1  0
  8 45  1  0
  8 46  1  0
 11 47  1  6
 12 48  1  0
 12 49  1  0
 12 50  1  0
 13 51  1  1
 15 52  1  1
 17 53  1  6
 18 54  1  0
 18 55  1  0
 18 56  1  0
 19 57  1  0
 19 58  1  0
 20 59  1  1
 22 60  1  0
 22 61  1  0
 22 62  1  0
 23 63  1  0
 23 64  1  0
 23 65  1  0
 24 66  1  6
 25 67  1  0
 26 68  1  6
 27 69  1  0
 27 70  1  0
 27 71  1  0
 28 72  1  0
 28 73  1  0
 29 74  1  1
 30 75  1  0
 30 76  1  0
 30 77  1  0
 33 78  1  0
 34 79  1  0
 35 80  1  6
 36 81  1  0
 36 82  1  0
 36 83  1  0
M  END


  Mrv1652307042108003D          

 83 84  0  0  0  0            999 V2000
   -5.3298   -1.8021   -0.3136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6842   -1.0489    0.8936 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7370   -0.0424    1.4293 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4813   -0.4692    1.8087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7807   -1.5918    1.8594 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7246   -2.3596    2.8739 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9752   -2.0636    0.7029 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7484   -3.5802    0.7726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6623   -1.3648    0.6294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2206   -0.8861    1.6638 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0497   -1.2760   -0.6730 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0985   -2.3957   -0.6608 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6579    0.0787   -0.9049 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0191    0.0333   -1.1660 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8088    0.6740   -0.2225 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5814    1.6012   -0.8345 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7691    1.2555   -1.3753 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5384    0.3852   -2.5847 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6897    0.5107   -0.4369 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9440    0.2260    0.8557 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7177   -0.5554    1.7511 N   0  0  1  0  0  0  0  0  0  0  0  0
    6.0739   -1.8582    1.3008 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7615    0.1541    2.4166 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6371   -0.3822    0.4571 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9781   -0.7462    1.6391 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0999    0.8970   -1.9246 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2693    0.1856   -2.5288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5335    2.2432   -1.3954 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7201    2.1867   -0.4581 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4359    3.2315    0.6324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9193    2.6485   -1.1913 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8866    3.8889   -1.5347 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0839    1.8778   -1.5542 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8960    1.2733   -0.7165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7402    1.2934    0.7189 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.9368    2.0943    1.2910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2885   -2.1613   -0.7952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8447   -2.7698    0.0192 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6423   -1.3675   -1.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9223   -1.7683    1.7344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6706   -0.5176    0.7411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2163    0.2258    2.4415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4529   -1.9011   -0.2795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8922   -3.8276    1.4026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7037   -4.0261   -0.2395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6729   -3.9946    1.2509 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6619   -1.5709   -1.4633 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6299   -3.3590   -1.0260 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4512   -2.6274    0.3491 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8974   -2.1918   -1.4031 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5654    0.6427    0.0529 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1643    1.1197    0.5999 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2556    2.1866   -1.7681 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7537   -0.6622   -2.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2574    0.6299   -3.3943 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4872    0.4166   -2.9389 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0054   -0.4427   -0.8602 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5494    1.1587   -0.2176 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7278    1.2013    1.3435 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7932   -1.7843    0.4565 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6715   -2.3346    2.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2395   -2.5316    1.1136 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9458   -0.2095    3.4586 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6107    1.2519    2.3769 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7217   -0.0589    1.8674 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7535   -1.2561   -0.2206 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1410   -1.6694    1.9015 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5714    1.1518   -2.8046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9424   -0.6233   -3.2471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7636    0.9419   -3.2093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0393   -0.1333   -1.8335 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3531    2.7459   -0.9210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7827    2.8716   -2.2752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8579    1.2205    0.0098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6381    2.7748    1.6397 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1248    4.0969    0.5538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4133    3.6101    0.5935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3052    1.8069   -2.6620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7305    0.7326   -1.1456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8607    1.8379    1.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0624    1.9021    2.3587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8221    1.7940    0.6828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6943    3.1520    1.0539 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
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 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 20 24  1  0  0  0  0
 24 25  1  0  0  0  0
 13 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  2  0  0  0  0
 31 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 35  3  1  0  0  0  0
 24 15  1  0  0  0  0
  1 37  1  0  0  0  0
  1 38  1  0  0  0  0
  1 39  1  0  0  0  0
  2 40  1  0  0  0  0
  2 41  1  0  0  0  0
  3 42  1  1  0  0  0
  7 43  1  6  0  0  0
  8 44  1  0  0  0  0
  8 45  1  0  0  0  0
  8 46  1  0  0  0  0
 11 47  1  6  0  0  0
 12 48  1  0  0  0  0
 12 49  1  0  0  0  0
 12 50  1  0  0  0  0
 13 51  1  1  0  0  0
 15 52  1  1  0  0  0
 17 53  1  6  0  0  0
 18 54  1  0  0  0  0
 18 55  1  0  0  0  0
 18 56  1  0  0  0  0
 19 57  1  0  0  0  0
 19 58  1  0  0  0  0
 20 59  1  1  0  0  0
 22 60  1  0  0  0  0
 22 61  1  0  0  0  0
 22 62  1  0  0  0  0
 23 63  1  0  0  0  0
 23 64  1  0  0  0  0
 23 65  1  0  0  0  0
 24 66  1  6  0  0  0
 25 67  1  0  0  0  0
 26 68  1  6  0  0  0
 27 69  1  0  0  0  0
 27 70  1  0  0  0  0
 27 71  1  0  0  0  0
 28 72  1  0  0  0  0
 28 73  1  0  0  0  0
 29 74  1  1  0  0  0
 30 75  1  0  0  0  0
 30 76  1  0  0  0  0
 30 77  1  0  0  0  0
 33 78  1  0  0  0  0
 34 79  1  0  0  0  0
 35 80  1  6  0  0  0
 36 81  1  0  0  0  0
 36 82  1  0  0  0  0
 36 83  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021627

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])[C@]([H])(O[C@]2([H])[C@]([H])(C(=O)[C@]([H])(C(=O)O[C@]([H])(C([H])([H])C([H])([H])[H])[C@@]([H])(\C([H])=C([H])/C(=O)[C@]([H])(C([H])([H])[H])C([H])([H])[C@]2([H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])O[C@]([H])(C([H])([H])[H])C([H])([H])[C@]1([H])N(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C28H47NO7/c1-10-23-15(2)11-12-22(30)16(3)13-17(4)26(19(6)24(31)20(7)27(33)35-23)36-28-25(32)21(29(8)9)14-18(5)34-28/h11-12,15-21,23,25-26,28,32H,10,13-14H2,1-9H3/b12-11-/t15-,16-,17+,18-,19+,20-,21+,23-,25-,26+,28+/m1/s1

> <INCHI_KEY>
OXFYAOOMMKGGAI-XAMVKXLFSA-N

> <FORMULA>
C28H47NO7

> <MOLECULAR_WEIGHT>
509.684

> <EXACT_MASS>
509.335252857

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
83

> <JCHEM_AVERAGE_POLARIZABILITY>
56.179255804385704

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R,5R,6S,7S,9R,11Z,13R,14R)-6-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-14-ethyl-3,5,7,9,13-pentamethyl-1-oxacyclotetradec-11-ene-2,4,10-trione

> <ALOGPS_LOGP>
2.90

> <JCHEM_LOGP>
4.757355863404752

> <ALOGPS_LOGS>
-4.28

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
12.831871997530776

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.560059398553452

> <JCHEM_PKA_STRONGEST_BASIC>
7.61965575932944

> <JCHEM_POLAR_SURFACE_AREA>
102.37

> <JCHEM_REFRACTIVITY>
138.7693

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.65e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,5R,6S,7S,9R,11Z,13R,14R)-6-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-14-ethyl-3,5,7,9,13-pentamethyl-1-oxacyclotetradec-11-ene-2,4,10-trione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 83 84  0  0  0  0  0  0  0  0999 V2000
   -5.3298   -1.8021   -0.3136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6842   -1.0489    0.8936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7370   -0.0424    1.4293 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4813   -0.4692    1.8087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7807   -1.5918    1.8594 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7246   -2.3596    2.8739 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9752   -2.0636    0.7029 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7484   -3.5802    0.7726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6623   -1.3648    0.6294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2206   -0.8861    1.6638 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0497   -1.2760   -0.6730 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0985   -2.3957   -0.6608 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6579    0.0787   -0.9049 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0191    0.0333   -1.1660 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8088    0.6740   -0.2225 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5814    1.6012   -0.8345 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5335    2.2432   -1.3954 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.4359    3.2315    0.6324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9193    2.6485   -1.1913 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8866    3.8889   -1.5347 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0839    1.8778   -1.5542 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8960    1.2733   -0.7165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7402    1.2934    0.7189 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.9368    2.0943    1.2910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2885   -2.1613   -0.7952 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.6423   -1.3675   -1.0288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9223   -1.7683    1.7344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6706   -0.5176    0.7411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2163    0.2258    2.4415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4529   -1.9011   -0.2795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8922   -3.8276    1.4026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7037   -4.0261   -0.2395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6729   -3.9946    1.2509 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6619   -1.5709   -1.4633 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6299   -3.3590   -1.0260 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4512   -2.6274    0.3491 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8974   -2.1918   -1.4031 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5654    0.6427    0.0529 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1643    1.1197    0.5999 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2556    2.1866   -1.7681 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7537   -0.6622   -2.3011 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2574    0.6299   -3.3943 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4872    0.4166   -2.9389 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0054   -0.4427   -0.8602 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5494    1.1587   -0.2176 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7278    1.2013    1.3435 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7932   -1.7843    0.4565 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6715   -2.3346    2.1336 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2395   -2.5316    1.1136 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9458   -0.2095    3.4586 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6107    1.2519    2.3769 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7217   -0.0589    1.8674 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7535   -1.2561   -0.2206 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1410   -1.6694    1.9015 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5714    1.1518   -2.8046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9424   -0.6233   -3.2471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7636    0.9419   -3.2093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0393   -0.1333   -1.8335 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3531    2.7459   -0.9210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7827    2.8716   -2.2752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8579    1.2205    0.0098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6381    2.7748    1.6397 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1248    4.0969    0.5538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4133    3.6101    0.5935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3052    1.8069   -2.6620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7305    0.7326   -1.1456 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8607    1.8379    1.1118 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0624    1.9021    2.3587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8221    1.7940    0.6828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6943    3.1520    1.0539 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
  9 11  1  0
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 31 32  2  0
 31 33  1  0
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 35  3  1  0
 24 15  1  0
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  3 42  1  1
  7 43  1  6
  8 44  1  0
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 34 79  1  0
 35 80  1  6
 36 81  1  0
 36 82  1  0
 36 83  1  0
M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0      -5.330  -1.802  -0.314  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.684  -1.049   0.894  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.737  -0.042   1.429  0.00  0.00           C+0
HETATM    4  O   UNK     0      -3.481  -0.469   1.809  0.00  0.00           O+0
HETATM    5  C   UNK     0      -2.781  -1.592   1.859  0.00  0.00           C+0
HETATM    6  O   UNK     0      -2.725  -2.360   2.874  0.00  0.00           O+0
HETATM    7  C   UNK     0      -1.975  -2.064   0.703  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.748  -3.580   0.773  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.662  -1.365   0.629  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.221  -0.886   1.664  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.050  -1.276  -0.673  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.099  -2.396  -0.661  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.658   0.079  -0.905  0.00  0.00           C+0
HETATM   14  O   UNK     0       2.019   0.033  -1.166  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.809   0.674  -0.223  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.581   1.601  -0.835  0.00  0.00           O+0
HETATM   17  C   UNK     0       4.769   1.256  -1.375  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.538   0.385  -2.585  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.690   0.511  -0.437  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.944   0.226   0.856  0.00  0.00           C+0
HETATM   21  N   UNK     0       5.718  -0.555   1.751  0.00  0.00           N+0
HETATM   22  C   UNK     0       6.074  -1.858   1.301  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.761   0.154   2.417  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.637  -0.382   0.457  0.00  0.00           C+0
HETATM   25  O   UNK     0       2.978  -0.746   1.639  0.00  0.00           O+0
HETATM   26  C   UNK     0      -0.100   0.897  -1.925  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.269   0.186  -2.529  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.534   2.243  -1.395  0.00  0.00           C+0
HETATM   29  C   UNK     0      -1.720   2.187  -0.458  0.00  0.00           C+0
HETATM   30  C   UNK     0      -1.436   3.232   0.632  0.00  0.00           C+0
HETATM   31  C   UNK     0      -2.919   2.648  -1.191  0.00  0.00           C+0
HETATM   32  O   UNK     0      -2.887   3.889  -1.535  0.00  0.00           O+0
HETATM   33  C   UNK     0      -4.084   1.878  -1.554  0.00  0.00           C+0
HETATM   34  C   UNK     0      -4.896   1.273  -0.717  0.00  0.00           C+0
HETATM   35  C   UNK     0      -4.740   1.293   0.719  0.00  0.00           C+0
HETATM   36  C   UNK     0      -5.937   2.094   1.291  0.00  0.00           C+0
HETATM   37  H   UNK     0      -6.289  -2.161  -0.795  0.00  0.00           H+0
HETATM   38  H   UNK     0      -4.845  -2.770   0.019  0.00  0.00           H+0
HETATM   39  H   UNK     0      -4.642  -1.367  -1.029  0.00  0.00           H+0
HETATM   40  H   UNK     0      -5.922  -1.768   1.734  0.00  0.00           H+0
HETATM   41  H   UNK     0      -6.671  -0.518   0.741  0.00  0.00           H+0
HETATM   42  H   UNK     0      -5.216   0.226   2.442  0.00  0.00           H+0
HETATM   43  H   UNK     0      -2.453  -1.901  -0.280  0.00  0.00           H+0
HETATM   44  H   UNK     0      -0.892  -3.828   1.403  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.704  -4.026  -0.240  0.00  0.00           H+0
HETATM   46  H   UNK     0      -2.673  -3.995   1.251  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.662  -1.571  -1.463  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.630  -3.359  -1.026  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.451  -2.627   0.349  0.00  0.00           H+0
HETATM   50  H   UNK     0       1.897  -2.192  -1.403  0.00  0.00           H+0
HETATM   51  H   UNK     0       0.565   0.643   0.053  0.00  0.00           H+0
HETATM   52  H   UNK     0       2.164   1.120   0.600  0.00  0.00           H+0
HETATM   53  H   UNK     0       5.256   2.187  -1.768  0.00  0.00           H+0
HETATM   54  H   UNK     0       4.754  -0.662  -2.301  0.00  0.00           H+0
HETATM   55  H   UNK     0       5.257   0.630  -3.394  0.00  0.00           H+0
HETATM   56  H   UNK     0       3.487   0.417  -2.939  0.00  0.00           H+0
HETATM   57  H   UNK     0       6.005  -0.443  -0.860  0.00  0.00           H+0
HETATM   58  H   UNK     0       6.549   1.159  -0.218  0.00  0.00           H+0
HETATM   59  H   UNK     0       4.728   1.201   1.343  0.00  0.00           H+0
HETATM   60  H   UNK     0       6.793  -1.784   0.457  0.00  0.00           H+0
HETATM   61  H   UNK     0       6.672  -2.335   2.134  0.00  0.00           H+0
HETATM   62  H   UNK     0       5.239  -2.532   1.114  0.00  0.00           H+0
HETATM   63  H   UNK     0       6.946  -0.210   3.459  0.00  0.00           H+0
HETATM   64  H   UNK     0       6.611   1.252   2.377  0.00  0.00           H+0
HETATM   65  H   UNK     0       7.722  -0.059   1.867  0.00  0.00           H+0
HETATM   66  H   UNK     0       3.753  -1.256  -0.221  0.00  0.00           H+0
HETATM   67  H   UNK     0       3.141  -1.669   1.902  0.00  0.00           H+0
HETATM   68  H   UNK     0       0.571   1.152  -2.805  0.00  0.00           H+0
HETATM   69  H   UNK     0      -0.942  -0.623  -3.247  0.00  0.00           H+0
HETATM   70  H   UNK     0      -1.764   0.942  -3.209  0.00  0.00           H+0
HETATM   71  H   UNK     0      -2.039  -0.133  -1.833  0.00  0.00           H+0
HETATM   72  H   UNK     0       0.353   2.746  -0.921  0.00  0.00           H+0
HETATM   73  H   UNK     0      -0.783   2.872  -2.275  0.00  0.00           H+0
HETATM   74  H   UNK     0      -1.858   1.220   0.010  0.00  0.00           H+0
HETATM   75  H   UNK     0      -1.638   2.775   1.640  0.00  0.00           H+0
HETATM   76  H   UNK     0      -2.125   4.097   0.554  0.00  0.00           H+0
HETATM   77  H   UNK     0      -0.413   3.610   0.594  0.00  0.00           H+0
HETATM   78  H   UNK     0      -4.305   1.807  -2.662  0.00  0.00           H+0
HETATM   79  H   UNK     0      -5.731   0.733  -1.146  0.00  0.00           H+0
HETATM   80  H   UNK     0      -3.861   1.838   1.112  0.00  0.00           H+0
HETATM   81  H   UNK     0      -6.062   1.902   2.359  0.00  0.00           H+0
HETATM   82  H   UNK     0      -6.822   1.794   0.683  0.00  0.00           H+0
HETATM   83  H   UNK     0      -5.694   3.152   1.054  0.00  0.00           H+0
CONECT    1    2   37   38   39                                             
CONECT    2    1    3   40   41                                             
CONECT    3    2    4   35   42                                             
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8    9   43                                             
CONECT    8    7   44   45   46                                             
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13   47                                             
CONECT   12   11   48   49   50                                             
CONECT   13   11   14   26   51                                             
CONECT   14   13   15                                                       
CONECT   15   14   16   24   52                                             
CONECT   16   15   17                                                       
CONECT   17   16   18   19   53                                             
CONECT   18   17   54   55   56                                             
CONECT   19   17   20   57   58                                             
CONECT   20   19   21   24   59                                             
CONECT   21   20   22   23                                                  
CONECT   22   21   60   61   62                                             
CONECT   23   21   63   64   65                                             
CONECT   24   20   25   15   66                                             
CONECT   25   24   67                                                       
CONECT   26   13   27   28   68                                             
CONECT   27   26   69   70   71                                             
CONECT   28   26   29   72   73                                             
CONECT   29   28   30   31   74                                             
CONECT   30   29   75   76   77                                             
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34   78                                                  
CONECT   34   33   35   79                                                  
CONECT   35   34   36    3   80                                             
CONECT   36   35   81   82   83                                             
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    1                                                            
CONECT   40    2                                                            
CONECT   41    2                                                            
CONECT   42    3                                                            
CONECT   43    7                                                            
CONECT   44    8                                                            
CONECT   45    8                                                            
CONECT   46    8                                                            
CONECT   47   11                                                            
CONECT   48   12                                                            
CONECT   49   12                                                            
CONECT   50   12                                                            
CONECT   51   13                                                            
CONECT   52   15                                                            
CONECT   53   17                                                            
CONECT   54   18                                                            
CONECT   55   18                                                            
CONECT   56   18                                                            
CONECT   57   19                                                            
CONECT   58   19                                                            
CONECT   59   20                                                            
CONECT   60   22                                                            
CONECT   61   22                                                            
CONECT   62   22                                                            
CONECT   63   23                                                            
CONECT   64   23                                                            
CONECT   65   23                                                            
CONECT   66   24                                                            
CONECT   67   25                                                            
CONECT   68   26                                                            
CONECT   69   27                                                            
CONECT   70   27                                                            
CONECT   71   27                                                            
CONECT   72   28                                                            
CONECT   73   28                                                            
CONECT   74   29                                                            
CONECT   75   30                                                            
CONECT   76   30                                                            
CONECT   77   30                                                            
CONECT   78   33                                                            
CONECT   79   34                                                            
CONECT   80   35                                                            
CONECT   81   36                                                            
CONECT   82   36                                                            
CONECT   83   36                                                            
MASTER        0    0    0    0    0    0    0    0   83    0  168    0
END

RDKit          3D

83 84  0  0  0  0  0  0  0  0999 V2000
   -5.3298   -1.8021   -0.3136 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₈H₄₇NO₇

Average Mass

509.6840 Da

Monoisotopic Mass

509.33525 Da

IUPAC Name

(3R,5R,6S,7S,9R,11Z,13R,14R)-6-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-14-ethyl-3,5,7,9,13-pentamethyl-1-oxacyclotetradec-11-ene-2,4,10-trione

Traditional Name

(3R,5R,6S,7S,9R,11Z,13R,14R)-6-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-14-ethyl-3,5,7,9,13-pentamethyl-1-oxacyclotetradec-11-ene-2,4,10-trione

CAS Registry Number

Not Available

SMILES

CC[C@H]1OC(=O)[C@H](C)C(=O)[C@H](C)[C@@H](O[C@@H]2O[C@H](C)C[C@@H]([C@H]2O)N(C)C)[C@@H](C)C[C@@H](C)C(=O)\C=C/[C@H]1C

InChI Identifier

InChI=1S/C28H47NO7/c1-10-23-15(2)11-12-22(30)16(3)13-17(4)26(19(6)24(31)20(7)27(33)35-23)36-28-25(32)21(29(8)9)14-18(5)34-28/h11-12,15-21,23,25-26,28,32H,10,13-14H2,1-9H3/b12-11-/t15-,16-,17+,18-,19+,20-,21+,23-,25-,26+,28+/m1/s1

InChI Key

OXFYAOOMMKGGAI-XAMVKXLFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces felleus	LOTUS Database	35616633
Streptomyces flavochromogenes	LOTUS Database	35616633
Streptomyces narbonensis	LOTUS Database	35616633
Streptomyces venezuelae	LOTUS Database	35616633
Streptomyces zaomyceticus	LOTUS Database	35616633
Unknown-fungus sp.	NPAtlas	5439233

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.9	ALOGPS
logP	4.76	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	8.56	ChemAxon
pKa (Strongest Basic)	7.62	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	102.37 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	138.77 m³·mol⁻¹	ChemAxon
Polarizability	56.18 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA016932

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

52083608

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Rickards RW, Smith RM: Macrolide antibiotic studies. 13. Partial absolute configurations of methymycin, neomethymycin, narbomycin and picromycin. Tetrahedron Lett. 1970 Mar;(13):1025-8. doi: 10.1016/s0040-4039(01)97897-9. [PubMed:5439233 ]

Showing NP-Card for Narbomycin (NP0021627)

MOL for NP0021627 (Narbomycin)

3D MOL for NP0021627 (Narbomycin)

3D SDF for NP0021627 (Narbomycin)

3D-SDF for NP0021627 (Narbomycin)

PDB for NP0021627 (Narbomycin)

3D PDB for NP0021627 (Narbomycin)

SMILES for NP0021627 (Narbomycin)

INCHI for NP0021627 (Narbomycin)

Structure for NP0021627 (Narbomycin)

3D Structure for NP0021627 (Narbomycin)