NP-MRD: Showing NP-Card for L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid (NP0021489)

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Record Information

Version

2.0

Created at

2021-01-06 06:46:16 UTC

Updated at

2021-07-15 17:36:29 UTC

NP-MRD ID

NP0021489

Secondary Accession Numbers

None

Natural Product Identification

Common Name

L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid

Provided By

NPAtlas

Description

L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid is found in Streptomyces and Streptomyces sp. X-11085. L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid was first documented in 1974 (PMID: 4850608). Based on a literature review very few articles have been published on (3E)-2-amino-4-(2-aminoethoxy)but-3-enoic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105163D          

 23 22  0  0  0  0            999 V2000
    3.9863    0.3882    0.6951 N   0  0  2  0  0  0  0  0  0  0  0  0
    3.3179   -0.6070   -0.1000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8284   -0.6032    0.1315 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2696    0.6684   -0.2065 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0969    0.7942   -0.0350 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9165    0.3068   -0.9454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3864    0.4378   -0.7686 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7103    1.5648    0.0535 N   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9044   -0.8365   -0.1608 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6832   -1.9110   -0.7921 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5916   -0.8333    1.0342 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4855    1.0939    0.0930 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7057   -0.0563    1.3090 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4784   -0.3761   -1.1761 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6880   -1.6195    0.1626 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5601   -0.8679    1.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556   -1.3320   -0.5423 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5277    1.2798    0.8220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5475   -0.2029   -1.8483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8684    0.5465   -1.7648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8426    2.4541   -0.4676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4543    1.3765    0.7537 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1456   -1.6652    1.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  1 12  1  0  0  0  0
  1 13  1  0  0  0  0
  2 14  1  0  0  0  0
  2 15  1  0  0  0  0
  3 16  1  0  0  0  0
  3 17  1  0  0  0  0
  5 18  1  0  0  0  0
  6 19  1  0  0  0  0
  7 20  1  6  0  0  0
  8 21  1  0  0  0  0
  8 22  1  0  0  0  0
 11 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021489

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@@]([H])(N([H])[H])C(\[H])=C(/[H])OC([H])([H])C([H])([H])N([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C6H12N2O3/c7-2-4-11-3-1-5(8)6(9)10/h1,3,5H,2,4,7-8H2,(H,9,10)/b3-1+/t5-/m0/s1

> <INCHI_KEY>
USGUVNUTPWXWBA-HNQUOIGGSA-N

> <FORMULA>
C6H12N2O3

> <MOLECULAR_WEIGHT>
160.1711

> <EXACT_MASS>
160.08479226

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
23

> <JCHEM_AVERAGE_POLARIZABILITY>
16.112743072459885

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3E)-2-amino-4-(2-aminoethoxy)but-3-enoic acid

> <ALOGPS_LOGP>
-3.49

> <JCHEM_LOGP>
-4.00784678292353

> <ALOGPS_LOGS>
-0.37

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.3014439932677293

> <JCHEM_PKA_STRONGEST_BASIC>
9.5376889957638

> <JCHEM_POLAR_SURFACE_AREA>
98.57000000000001

> <JCHEM_REFRACTIVITY>
39.5901

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.80e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3E)-2-amino-4-(2-aminoethoxy)but-3-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  N   UNK     0       3.986   0.388   0.695  0.00  0.00           N+0
HETATM    2  C   UNK     0       3.318  -0.607  -0.100  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.828  -0.603   0.132  0.00  0.00           C+0
HETATM    4  O   UNK     0       1.270   0.668  -0.207  0.00  0.00           O+0
HETATM    5  C   UNK     0      -0.097   0.794  -0.035  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.917   0.307  -0.945  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.386   0.438  -0.769  0.00  0.00           C+0
HETATM    8  N   UNK     0      -2.710   1.565   0.054  0.00  0.00           N+0
HETATM    9  C   UNK     0      -2.904  -0.837  -0.161  0.00  0.00           C+0
HETATM   10  O   UNK     0      -2.683  -1.911  -0.792  0.00  0.00           O+0
HETATM   11  O   UNK     0      -3.592  -0.833   1.034  0.00  0.00           O+0
HETATM   12  H   UNK     0       4.486   1.094   0.093  0.00  0.00           H+0
HETATM   13  H   UNK     0       4.706  -0.056   1.309  0.00  0.00           H+0
HETATM   14  H   UNK     0       3.478  -0.376  -1.176  0.00  0.00           H+0
HETATM   15  H   UNK     0       3.688  -1.619   0.163  0.00  0.00           H+0
HETATM   16  H   UNK     0       1.560  -0.868   1.176  0.00  0.00           H+0
HETATM   17  H   UNK     0       1.356  -1.332  -0.542  0.00  0.00           H+0
HETATM   18  H   UNK     0      -0.528   1.280   0.822  0.00  0.00           H+0
HETATM   19  H   UNK     0      -0.548  -0.203  -1.848  0.00  0.00           H+0
HETATM   20  H   UNK     0      -2.868   0.547  -1.765  0.00  0.00           H+0
HETATM   21  H   UNK     0      -2.843   2.454  -0.468  0.00  0.00           H+0
HETATM   22  H   UNK     0      -3.454   1.377   0.754  0.00  0.00           H+0
HETATM   23  H   UNK     0      -4.146  -1.665   1.260  0.00  0.00           H+0
CONECT    1    2   12   13                                                  
CONECT    2    1    3   14   15                                             
CONECT    3    2    4   16   17                                             
CONECT    4    3    5                                                       
CONECT    5    4    6   18                                                  
CONECT    6    5    7   19                                                  
CONECT    7    6    8    9   20                                             
CONECT    8    7   21   22                                                  
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   23                                                       
CONECT   12    1                                                            
CONECT   13    1                                                            
CONECT   14    2                                                            
CONECT   15    2                                                            
CONECT   16    3                                                            
CONECT   17    3                                                            
CONECT   18    5                                                            
CONECT   19    6                                                            
CONECT   20    7                                                            
CONECT   21    8                                                            
CONECT   22    8                                                            
CONECT   23   11                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   44    0
END

View in JSmol View NMR Assignments

Synonyms

Value	Source
(3E)-2-Amino-4-(2-aminoethoxy)but-3-enoate	Generator
Aviglycine	MeSH
Aminoethoxyvinylglycine hydrochloride	MeSH
Aminoethoxyvinylglycine	MeSH

Chemical Formula

C₆H₁₂N₂O₃

Average Mass

160.1711 Da

Monoisotopic Mass

160.08479 Da

IUPAC Name

(2S,3E)-2-amino-4-(2-aminoethoxy)but-3-enoic acid

Traditional Name

(2S,3E)-2-amino-4-(2-aminoethoxy)but-3-enoic acid

CAS Registry Number

Not Available

SMILES

NCCO\C=C\C(N)C(O)=O

InChI Identifier

InChI=1S/C6H12N2O3/c7-2-4-11-3-1-5(8)6(9)10/h1,3,5H,2,4,7-8H2,(H,9,10)/b3-1+

InChI Key

USGUVNUTPWXWBA-HNQUOIGGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	4850608
Streptomyces sp. X-11085	Bacteria	KNApSAcK

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

L-alpha-amino acids

Alternative Parents

Substituents

L-alpha-amino acid
Unsaturated fatty acid
Fatty acid
Fatty acyl
Amino acid
Carboxylic acid
Monocarboxylic acid or derivatives
Amine
Hydrocarbon derivative
Organic oxide
Primary amine
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Primary aliphatic amine
Organic nitrogen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-3.5	ALOGPS
logP	-4	ChemAxon
logS	-0.37	ALOGPS
pKa (Strongest Acidic)	2.3	ChemAxon
pKa (Strongest Basic)	9.54	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	98.57 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	39.59 m³·mol⁻¹	ChemAxon
Polarizability	16.11 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA017736

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4572397

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5458447

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Pruess DL, Scannell JP, Kellett M, Ax HA, Janecek J, Williams TH, Stempel A, Berger J: Antimetabolites produced by microorganisms. X. L-2-amino-4-(2-aminoethoxy)-trans-3-butenoic acid. J Antibiot (Tokyo). 1974 Apr;27(4):229-33. doi: 10.7164/antibiotics.27.229. [PubMed:4850608 ]

Showing NP-Card for L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid (NP0021489)

MOL for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)

3D MOL for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)

3D SDF for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)

3D-SDF for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)

PDB for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)

3D PDB for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)

SMILES for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)

INCHI for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)

Structure for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)

3D Structure for NP0021489 (L-2-Amino-4-(2-aminoethoxy)-trans-3-butenoic acid)