NP-MRD: Showing NP-Card for 10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester (NP0021477)

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Record Information

Version

1.0

Created at

2021-01-06 06:45:38 UTC

Updated at

2021-07-15 17:36:27 UTC

NP-MRD ID

NP0021477

Secondary Accession Numbers

None

Natural Product Identification

Common Name

10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester

Provided By

NPAtlas

Description

Methyl (Z,Z)-10-hydroxy-2,8-decadiene-4,6-diynoate belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. 10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester is found in Fistulina hepatica. It was first documented in 1973 (PMID: 4799454). Based on a literature review a small amount of articles have been published on Methyl (Z,Z)-10-hydroxy-2,8-decadiene-4,6-diynoate (PMID: 11413487) (PMID: 16902246) (PMID: 17374880) (PMID: 20044567).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105163D          

 24 23  0  0  0  0            999 V2000
    6.8435    0.1720   -0.2339 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4290    0.2266   -0.2481 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6426   -0.4648    0.6377 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1996   -1.1824    1.5053 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1869   -0.4164    0.6327 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5182    0.3173   -0.2508 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0779    0.3670   -0.2579 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1279    0.4043   -0.2433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5401    0.4508   -0.2025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7481    0.4782   -0.1627 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1844    0.4901   -0.1079 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9403   -0.4225   -0.6967 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4256   -0.3993   -0.6327 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.8471    0.6965    0.1177 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2182   -0.8767   -0.4077 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2616    0.5218    0.7402 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2285    0.8542   -1.0138 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5961   -0.9720    1.3429 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1246    0.8709   -0.9592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6563    1.2900    0.4452 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4412   -1.2106   -1.2428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7596   -1.3117   -0.0906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8948   -0.4154   -1.6316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7614    0.5320    1.0860 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  3  0  0  0  0
  8  9  1  0  0  0  0
  9 10  3  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  1 15  1  0  0  0  0
  1 16  1  0  0  0  0
  1 17  1  0  0  0  0
  5 18  1  0  0  0  0
  6 19  1  0  0  0  0
 11 20  1  0  0  0  0
 12 21  1  0  0  0  0
 13 22  1  0  0  0  0
 13 23  1  0  0  0  0
 14 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021477

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])C(\[H])=C(/[H])C#CC#C\C([H])=C(/[H])C(=O)OC([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C11H10O3/c1-14-11(13)9-7-5-3-2-4-6-8-10-12/h6-9,12H,10H2,1H3/b8-6+,9-7+

> <INCHI_KEY>
KDEVFRDBFLWTKI-CDJQDVQCSA-N

> <FORMULA>
C11H10O3

> <MOLECULAR_WEIGHT>
190.1953

> <EXACT_MASS>
190.062994186

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
24

> <JCHEM_AVERAGE_POLARIZABILITY>
21.10772909221935

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (2E,8E)-10-hydroxydeca-2,8-dien-4,6-diynoate

> <ALOGPS_LOGP>
1.83

> <JCHEM_LOGP>
1.4929421826666662

> <ALOGPS_LOGS>
-3.71

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.56548214097998

> <JCHEM_PKA_STRONGEST_BASIC>
-2.5514581115353554

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
56.95410000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.74e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (2E,8E)-10-hydroxydeca-2,8-dien-4,6-diynoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       6.843   0.172  -0.234  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.429   0.227  -0.248  0.00  0.00           O+0
HETATM    3  C   UNK     0       4.643  -0.465   0.638  0.00  0.00           C+0
HETATM    4  O   UNK     0       5.200  -1.182   1.505  0.00  0.00           O+0
HETATM    5  C   UNK     0       3.187  -0.416   0.633  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.518   0.317  -0.251  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.078   0.367  -0.258  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.128   0.404  -0.243  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.540   0.451  -0.203  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.748   0.478  -0.163  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.184   0.490  -0.108  0.00  0.00           C+0
HETATM   12  C   UNK     0      -4.940  -0.423  -0.697  0.00  0.00           C+0
HETATM   13  C   UNK     0      -6.426  -0.399  -0.633  0.00  0.00           C+0
HETATM   14  O   UNK     0      -6.847   0.697   0.118  0.00  0.00           O+0
HETATM   15  H   UNK     0       7.218  -0.877  -0.408  0.00  0.00           H+0
HETATM   16  H   UNK     0       7.262   0.522   0.740  0.00  0.00           H+0
HETATM   17  H   UNK     0       7.229   0.854  -1.014  0.00  0.00           H+0
HETATM   18  H   UNK     0       2.596  -0.972   1.343  0.00  0.00           H+0
HETATM   19  H   UNK     0       3.125   0.871  -0.959  0.00  0.00           H+0
HETATM   20  H   UNK     0      -4.656   1.290   0.445  0.00  0.00           H+0
HETATM   21  H   UNK     0      -4.441  -1.211  -1.243  0.00  0.00           H+0
HETATM   22  H   UNK     0      -6.760  -1.312  -0.091  0.00  0.00           H+0
HETATM   23  H   UNK     0      -6.895  -0.415  -1.632  0.00  0.00           H+0
HETATM   24  H   UNK     0      -6.761   0.532   1.086  0.00  0.00           H+0
CONECT    1    2   15   16   17                                             
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   18                                                  
CONECT    6    5    7   19                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   20                                                  
CONECT   12   11   13   21                                                  
CONECT   13   12   14   22   23                                             
CONECT   14   13   24                                                       
CONECT   15    1                                                            
CONECT   16    1                                                            
CONECT   17    1                                                            
CONECT   18    5                                                            
CONECT   19    6                                                            
CONECT   20   11                                                            
CONECT   21   12                                                            
CONECT   22   13                                                            
CONECT   23   13                                                            
CONECT   24   14                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   46    0
END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Methyl (Z,Z)-10-hydroxy-2,8-decadiene-4,6-diynoic acid	Generator
Methyl (2E,8E)-10-hydroxydeca-2,8-dien-4,6-diynoic acid	HMDB

Chemical Formula

C₁₁H₁₀O₃

Average Mass

190.1953 Da

Monoisotopic Mass

190.06299 Da

IUPAC Name

methyl (2E,8E)-10-hydroxydeca-2,8-dien-4,6-diynoate

Traditional Name

methyl (2E,8E)-10-hydroxydeca-2,8-dien-4,6-diynoate

CAS Registry Number

Not Available

SMILES

COC(=O)\C=C\C#CC#C\C=C\CO

InChI Identifier

InChI=1S/C11H10O3/c1-14-11(13)9-7-5-3-2-4-6-8-10-12/h6-9,12H,10H2,1H3/b8-6+,9-7+

InChI Key

KDEVFRDBFLWTKI-CDJQDVQCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Fistulina hepatica	NPAtlas	4799454

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Fatty alcohols

Alternative Parents

Not Available

Substituents

Not Available

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.83	ALOGPS
logP	1.49	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	15.57	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	56.95 m³·mol⁻¹	ChemAxon
Polarizability	21.11 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA015343

HMDB ID

HMDB0039359

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB018916

KNApSAcK ID

Not Available

Chemspider ID

28286949

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101412911

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
Farrell IW, Keeping JW, Pellatt MG, Thaller V: Natural acetylenes. XLI. Polyacetylenes from fungal fruiting bodies. J Chem Soc Perkin 1. 1973;22:2642-3. doi: 10.1039/p19730002642. [PubMed:4799454 ]

Showing NP-Card for 10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester (NP0021477)

MOL for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)

3D MOL for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)

3D SDF for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)

3D-SDF for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)

PDB for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)

3D PDB for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)

SMILES for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)

INCHI for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)

Structure for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)

3D Structure for NP0021477 (10-Hydroxydeca-trans-2,trans-8-dien-4,6-diinsaeuremethylester)