NP-MRD: Showing NP-Card for α-Methyldethiobiotin (NP0021433)

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Record Information

Version

1.0

Created at

2021-01-06 06:40:52 UTC

Updated at

2021-07-15 17:36:21 UTC

NP-MRD ID

NP0021433

Secondary Accession Numbers

None

Natural Product Identification

Common Name

α-Methyldethiobiotin

Provided By

NPAtlas

Description

6-(2-Hydroxy-4-methyl-4,5-dihydro-1H-imidazol-5-yl)-2-methylhexanoic acid belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms. α-Methyldethiobiotin is found in Streptomyces lydicus. It was first documented in 1972 (PMID: 4680803). Based on a literature review very few articles have been published on 6-(2-hydroxy-4-methyl-4,5-dihydro-1H-imidazol-5-yl)-2-methylhexanoic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105153D          

 36 36  0  0  0  0            999 V2000
   -4.3291   -0.9867    1.0409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9400   -0.8004    0.4523 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7993    0.6753    0.1508 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4407    0.9569   -0.4432 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3017    0.5764    0.4760 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9695    0.9280   -0.2748 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2109    0.6064    0.5138 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2213   -0.8166    0.7950 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0710   -1.4842   -0.1156 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3892   -2.7124   -0.0961 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5210   -0.5285   -1.0804 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3906    0.7543   -0.4500 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6408    1.1532    0.3038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8382   -1.5555   -0.8074 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9984   -2.4770   -0.9936 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7045   -1.2441   -1.8448 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3984   -0.3409    1.9326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1279   -0.6828    0.3535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4704   -2.0637    1.3286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2147   -1.1596    1.2100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5707    0.9172   -0.6029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0026    1.2507    1.0575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2957    0.4293   -1.3997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    2.0641   -0.6213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3695   -0.5293    0.6435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3626    1.1069    1.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9149    2.0063   -0.5244 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9817    0.3726   -1.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3309    1.1994    1.4148 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6955   -1.3275    1.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8715   -0.7618   -2.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1372    1.5755   -1.1329 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4815    1.1407   -0.4049 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4730    2.1497    0.7496 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8397    0.4038    1.1067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5911   -0.7954   -1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  2 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 12  7  1  0  0  0  0
  1 17  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  2 20  1  1  0  0  0
  3 21  1  0  0  0  0
  3 22  1  0  0  0  0
  4 23  1  0  0  0  0
  4 24  1  0  0  0  0
  5 25  1  0  0  0  0
  5 26  1  0  0  0  0
  6 27  1  0  0  0  0
  6 28  1  0  0  0  0
  7 29  1  1  0  0  0
  8 30  1  0  0  0  0
 11 31  1  0  0  0  0
 12 32  1  6  0  0  0
 13 33  1  0  0  0  0
 13 34  1  0  0  0  0
 13 35  1  0  0  0  0
 16 36  1  0  0  0  0
M  END

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
   -4.3291   -0.9867    1.0409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9400   -0.8004    0.4523 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7993    0.6753    0.1508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4407    0.9569   -0.4432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3017    0.5764    0.4760 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9695    0.9280   -0.2748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2109    0.6064    0.5138 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2213   -0.8166    0.7950 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0710   -1.4842   -0.1156 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3892   -2.7124   -0.0961 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5210   -0.5285   -1.0804 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3906    0.7543   -0.4500 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6408    1.1532    0.3038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8382   -1.5555   -0.8074 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9984   -2.4770   -0.9936 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7045   -1.2441   -1.8448 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3984   -0.3409    1.9326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1279   -0.6828    0.3535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4704   -2.0637    1.3286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2147   -1.1596    1.2100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5707    0.9172   -0.6029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0026    1.2507    1.0575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2957    0.4293   -1.3997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    2.0641   -0.6213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3695   -0.5293    0.6435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3626    1.1069    1.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9149    2.0063   -0.5244 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9817    0.3726   -1.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3309    1.1994    1.4148 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6955   -1.3275    1.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8715   -0.7618   -2.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1372    1.5755   -1.1329 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4815    1.1407   -0.4049 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4730    2.1497    0.7496 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8397    0.4038    1.1067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5911   -0.7954   -1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
  2 14  1  0
 14 15  2  0
 14 16  1  0
 12  7  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  1
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  0
  6 28  1  0
  7 29  1  1
  8 30  1  0
 11 31  1  0
 12 32  1  6
 13 33  1  0
 13 34  1  0
 13 35  1  0
 16 36  1  0
M  END


  Mrv1652306242105153D          

 36 36  0  0  0  0            999 V2000
   -4.3291   -0.9867    1.0409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9400   -0.8004    0.4523 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7993    0.6753    0.1508 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4407    0.9569   -0.4432 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3017    0.5764    0.4760 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9695    0.9280   -0.2748 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2109    0.6064    0.5138 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2213   -0.8166    0.7950 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0710   -1.4842   -0.1156 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3892   -2.7124   -0.0961 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5210   -0.5285   -1.0804 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3906    0.7543   -0.4500 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6408    1.1532    0.3038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8382   -1.5555   -0.8074 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9984   -2.4770   -0.9936 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7045   -1.2441   -1.8448 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3984   -0.3409    1.9326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1279   -0.6828    0.3535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4704   -2.0637    1.3286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2147   -1.1596    1.2100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5707    0.9172   -0.6029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0026    1.2507    1.0575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2957    0.4293   -1.3997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    2.0641   -0.6213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3695   -0.5293    0.6435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3626    1.1069    1.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9149    2.0063   -0.5244 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9817    0.3726   -1.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3309    1.1994    1.4148 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6955   -1.3275    1.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8715   -0.7618   -2.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1372    1.5755   -1.1329 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4815    1.1407   -0.4049 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4730    2.1497    0.7496 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8397    0.4038    1.1067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5911   -0.7954   -1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  2 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 12  7  1  0  0  0  0
  1 17  1  0  0  0  0
  1 18  1  0  0  0  0
  1 19  1  0  0  0  0
  2 20  1  1  0  0  0
  3 21  1  0  0  0  0
  3 22  1  0  0  0  0
  4 23  1  0  0  0  0
  4 24  1  0  0  0  0
  5 25  1  0  0  0  0
  5 26  1  0  0  0  0
  6 27  1  0  0  0  0
  6 28  1  0  0  0  0
  7 29  1  1  0  0  0
  8 30  1  0  0  0  0
 11 31  1  0  0  0  0
 12 32  1  6  0  0  0
 13 33  1  0  0  0  0
 13 34  1  0  0  0  0
 13 35  1  0  0  0  0
 16 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021433

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[C@@]1([H])N([H])C(=O)N([H])[C@]1([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C11H20N2O3/c1-7(10(14)15)5-3-4-6-9-8(2)12-11(16)13-9/h7-9H,3-6H2,1-2H3,(H,14,15)(H2,12,13,16)/t7-,8-,9-/m1/s1

> <INCHI_KEY>
DSLSWBIYQALLJM-UHFFFAOYSA-N

> <FORMULA>
C11H20N2O3

> <MOLECULAR_WEIGHT>
228.292

> <EXACT_MASS>
228.147392512

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
24.546536657722015

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R)-2-methyl-6-[(4R,5R)-5-methyl-2-oxoimidazolidin-4-yl]hexanoic acid

> <ALOGPS_LOGP>
1.19

> <JCHEM_LOGP>
1.2686849439999988

> <ALOGPS_LOGS>
-2.32

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.884632817959012

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.649976787065778

> <JCHEM_PKA_STRONGEST_BASIC>
-1.7681297503774513

> <JCHEM_POLAR_SURFACE_AREA>
78.43

> <JCHEM_REFRACTIVITY>
58.9725

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.10e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-methyl-6-[(4R,5R)-5-methyl-2-oxoimidazolidin-4-yl]hexanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
   -4.3291   -0.9867    1.0409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9400   -0.8004    0.4523 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7993    0.6753    0.1508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4407    0.9569   -0.4432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3017    0.5764    0.4760 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9695    0.9280   -0.2748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2109    0.6064    0.5138 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2213   -0.8166    0.7950 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0710   -1.4842   -0.1156 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3892   -2.7124   -0.0961 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5210   -0.5285   -1.0804 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3906    0.7543   -0.4500 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6408    1.1532    0.3038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8382   -1.5555   -0.8074 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9984   -2.4770   -0.9936 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7045   -1.2441   -1.8448 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3984   -0.3409    1.9326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1279   -0.6828    0.3535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4704   -2.0637    1.3286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2147   -1.1596    1.2100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5707    0.9172   -0.6029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0026    1.2507    1.0575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2957    0.4293   -1.3997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    2.0641   -0.6213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3695   -0.5293    0.6435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3626    1.1069    1.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9149    2.0063   -0.5244 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9817    0.3726   -1.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3309    1.1994    1.4148 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6955   -1.3275    1.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8715   -0.7618   -2.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1372    1.5755   -1.1329 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4815    1.1407   -0.4049 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4730    2.1497    0.7496 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8397    0.4038    1.1067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5911   -0.7954   -1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
  2 14  1  0
 14 15  2  0
 14 16  1  0
 12  7  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  1
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  0
  6 28  1  0
  7 29  1  1
  8 30  1  0
 11 31  1  0
 12 32  1  6
 13 33  1  0
 13 34  1  0
 13 35  1  0
 16 36  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.329  -0.987   1.041  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.940  -0.800   0.452  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.799   0.675   0.151  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.441   0.957  -0.443  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.302   0.576   0.476  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.970   0.928  -0.275  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.211   0.606   0.514  0.00  0.00           C+0
HETATM    8  N   UNK     0       2.221  -0.817   0.795  0.00  0.00           N+0
HETATM    9  C   UNK     0       3.071  -1.484  -0.116  0.00  0.00           C+0
HETATM   10  O   UNK     0       3.389  -2.712  -0.096  0.00  0.00           O+0
HETATM   11  N   UNK     0       3.521  -0.529  -1.080  0.00  0.00           N+0
HETATM   12  C   UNK     0       3.391   0.754  -0.450  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.641   1.153   0.304  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.838  -1.556  -0.807  0.00  0.00           C+0
HETATM   15  O   UNK     0      -1.998  -2.477  -0.994  0.00  0.00           O+0
HETATM   16  O   UNK     0      -3.704  -1.244  -1.845  0.00  0.00           O+0
HETATM   17  H   UNK     0      -4.398  -0.341   1.933  0.00  0.00           H+0
HETATM   18  H   UNK     0      -5.128  -0.683   0.354  0.00  0.00           H+0
HETATM   19  H   UNK     0      -4.470  -2.064   1.329  0.00  0.00           H+0
HETATM   20  H   UNK     0      -2.215  -1.160   1.210  0.00  0.00           H+0
HETATM   21  H   UNK     0      -3.571   0.917  -0.603  0.00  0.00           H+0
HETATM   22  H   UNK     0      -3.003   1.251   1.058  0.00  0.00           H+0
HETATM   23  H   UNK     0      -1.296   0.429  -1.400  0.00  0.00           H+0
HETATM   24  H   UNK     0      -1.385   2.064  -0.621  0.00  0.00           H+0
HETATM   25  H   UNK     0      -0.370  -0.529   0.644  0.00  0.00           H+0
HETATM   26  H   UNK     0      -0.363   1.107   1.434  0.00  0.00           H+0
HETATM   27  H   UNK     0       0.915   2.006  -0.524  0.00  0.00           H+0
HETATM   28  H   UNK     0       0.982   0.373  -1.230  0.00  0.00           H+0
HETATM   29  H   UNK     0       2.331   1.199   1.415  0.00  0.00           H+0
HETATM   30  H   UNK     0       1.696  -1.327   1.550  0.00  0.00           H+0
HETATM   31  H   UNK     0       3.872  -0.762  -2.052  0.00  0.00           H+0
HETATM   32  H   UNK     0       3.137   1.575  -1.133  0.00  0.00           H+0
HETATM   33  H   UNK     0       5.481   1.141  -0.405  0.00  0.00           H+0
HETATM   34  H   UNK     0       4.473   2.150   0.750  0.00  0.00           H+0
HETATM   35  H   UNK     0       4.840   0.404   1.107  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.591  -0.795  -1.652  0.00  0.00           H+0
CONECT    1    2   17   18   19                                             
CONECT    2    1    3   14   20                                             
CONECT    3    2    4   21   22                                             
CONECT    4    3    5   23   24                                             
CONECT    5    4    6   25   26                                             
CONECT    6    5    7   27   28                                             
CONECT    7    6    8   12   29                                             
CONECT    8    7    9   30                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   31                                                  
CONECT   12   11   13    7   32                                             
CONECT   13   12   33   34   35                                             
CONECT   14    2   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   36                                                       
CONECT   17    1                                                            
CONECT   18    1                                                            
CONECT   19    1                                                            
CONECT   20    2                                                            
CONECT   21    3                                                            
CONECT   22    3                                                            
CONECT   23    4                                                            
CONECT   24    4                                                            
CONECT   25    5                                                            
CONECT   26    5                                                            
CONECT   27    6                                                            
CONECT   28    6                                                            
CONECT   29    7                                                            
CONECT   30    8                                                            
CONECT   31   11                                                            
CONECT   32   12                                                            
CONECT   33   13                                                            
CONECT   34   13                                                            
CONECT   35   13                                                            
CONECT   36   16                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   72    0
END

RDKit          3D

36 36  0  0  0  0  0  0  0  0999 V2000
   -4.3291   -0.9867    1.0409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9400   -0.8004    0.4523 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7993    0.6753    0.1508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4407    0.9569   -0.4432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3017    0.5764    0.4760 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9695    0.9280   -0.2748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2109    0.6064    0.5138 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2213   -0.8166    0.7950 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.0710   -1.4842   -0.1156 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3892   -2.7124   -0.0961 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5210   -0.5285   -1.0804 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3906    0.7543   -0.4500 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6408    1.1532    0.3038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8382   -1.5555   -0.8074 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9984   -2.4770   -0.9936 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7045   -1.2441   -1.8448 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3984   -0.3409    1.9326 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1279   -0.6828    0.3535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4704   -2.0637    1.3286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2147   -1.1596    1.2100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5707    0.9172   -0.6029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0026    1.2507    1.0575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2957    0.4293   -1.3997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3846    2.0641   -0.6213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3695   -0.5293    0.6435 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3626    1.1069    1.4340 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9149    2.0063   -0.5244 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9817    0.3726   -1.2304 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3309    1.1994    1.4148 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6955   -1.3275    1.5495 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8715   -0.7618   -2.0516 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1372    1.5755   -1.1329 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4815    1.1407   -0.4049 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4730    2.1497    0.7496 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8397    0.4038    1.1067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5911   -0.7954   -1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
  2 14  1  0
 14 15  2  0
 14 16  1  0
 12  7  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  1
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  0
  5 26  1  0
  6 27  1  0
  6 28  1  0
  7 29  1  1
  8 30  1  0
 11 31  1  0
 12 32  1  6
 13 33  1  0
 13 34  1  0
 13 35  1  0
 16 36  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
6-(2-Hydroxy-4-methyl-4,5-dihydro-1H-imidazol-5-yl)-2-methylhexanoate	Generator
alpha-Methyldethiobiotin	MeSH

Chemical Formula

C₁₁H₂₀N₂O₃

Average Mass

228.2920 Da

Monoisotopic Mass

228.14739 Da

IUPAC Name

(2R)-2-methyl-6-[(4R,5R)-5-methyl-2-oxoimidazolidin-4-yl]hexanoic acid

Traditional Name

(2R)-2-methyl-6-[(4R,5R)-5-methyl-2-oxoimidazolidin-4-yl]hexanoic acid

CAS Registry Number

Not Available

SMILES

CC(CCCCC1NC(=O)NC1C)C(O)=O

InChI Identifier

InChI=1S/C11H20N2O3/c1-7(10(14)15)5-3-4-6-9-8(2)12-11(16)13-9/h7-9H,3-6H2,1-2H3,(H,14,15)(H2,12,13,16)

InChI Key

DSLSWBIYQALLJM-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces lydicus	NPAtlas	4680803

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Medium-chain fatty acids

Alternative Parents

Substituents

Medium-chain fatty acid
Amino fatty acid
Branched fatty acid
Heterocyclic fatty acid
Methyl-branched fatty acid
Imidazolidinone
Imidazolidine
Carbonic acid derivative
Urea
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Azacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organic nitrogen compound
Organic oxygen compound
Carbonyl group
Organonitrogen compound
Organooxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.19	ALOGPS
logP	1.27	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	4.65	ChemAxon
pKa (Strongest Basic)	-1.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	78.43 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	58.97 m³·mol⁻¹	ChemAxon
Polarizability	24.55 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA016847

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

148512

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

169822

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Hanka LJ, Martin DG, Reineke LM: Two new antimetabolites of biotin: alpha-methyldethiobiotin and alpha-methylbiotin. Antimicrob Agents Chemother. 1972 Feb;1(2):135-8. doi: 10.1128/aac.1.2.135. [PubMed:4680803 ]

Showing NP-Card for α-Methyldethiobiotin (NP0021433)

MOL for NP0021433 (α-Methyldethiobiotin)

3D MOL for NP0021433 (α-Methyldethiobiotin)

3D SDF for NP0021433 (α-Methyldethiobiotin)

3D-SDF for NP0021433 (α-Methyldethiobiotin)

PDB for NP0021433 (α-Methyldethiobiotin)

3D PDB for NP0021433 (α-Methyldethiobiotin)

SMILES for NP0021433 (α-Methyldethiobiotin)

INCHI for NP0021433 (α-Methyldethiobiotin)

Structure for NP0021433 (α-Methyldethiobiotin)

3D Structure for NP0021433 (α-Methyldethiobiotin)