NP-MRD: Showing NP-Card for Bredinin (NP0021419)

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Record Information

Version

2.0

Created at

2021-01-06 06:40:12 UTC

Updated at

2021-07-15 17:36:18 UTC

NP-MRD ID

NP0021419

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Bredinin

Provided By

NPAtlas

Description

1-[3,4-Dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-hydroxyimidazole-4-carboxamide belongs to the class of organic compounds known as 1-ribosyl-imidazolecarboxamides. These are organic compounds containing the imidazole ring linked to a ribose ring through a 1-2 bond. Bredinin is found in Eupenicillium brefeldianum M-2166 and Penicillium brefeldianum. Bredinin was first documented in 1974 (PMID: 4616933). Based on a literature review very few articles have been published on 1-[3,4-Dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-hydroxyimidazole-4-carboxamide.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242105153D          

 31 32  0  0  0  0            999 V2000
    5.4780    1.0696   -0.0235 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1204    1.3748    0.2345 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8421    2.3955    0.9093 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0620    0.5215   -0.2726 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2166   -0.6030   -1.0093 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9936   -1.1013   -1.2787 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0467   -0.3177   -0.7283 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3471   -0.5401   -0.8112 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1266    0.6096   -0.7487 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4127    0.0990   -0.7556 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4216    1.0139   -0.1308 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5070    2.2447   -0.7722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3860   -1.1777    0.0507 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1658   -1.1060    1.1917 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9065   -1.3114    0.3799 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4834   -2.6165    0.4155 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7008    0.6824   -0.1081 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0607    1.6970    0.5786 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7886    0.0714   -0.1501 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2222    1.7947   -0.0999 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8652   -2.0052   -1.8597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6728   -1.0927   -1.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6890   -0.0944   -1.8222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1954    1.1293    0.9493 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4104    0.5146   -0.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6756    2.9245   -0.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6566   -2.0252   -0.6158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8108   -1.8781    1.1562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6559   -0.7943    1.3383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9661   -3.1972   -0.1996 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0922    1.7183    1.6076 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
  7 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17  4  2  0  0  0  0
 15  8  1  0  0  0  0
  1 19  1  0  0  0  0
  1 20  1  0  0  0  0
  6 21  1  0  0  0  0
  8 22  1  6  0  0  0
 10 23  1  6  0  0  0
 11 24  1  0  0  0  0
 11 25  1  0  0  0  0
 12 26  1  0  0  0  0
 13 27  1  6  0  0  0
 14 28  1  0  0  0  0
 15 29  1  1  0  0  0
 16 30  1  0  0  0  0
 18 31  1  0  0  0  0
M  END

     RDKit          3D

 31 32  0  0  0  0  0  0  0  0999 V2000
    5.4780    1.0696   -0.0235 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1204    1.3748    0.2345 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8421    2.3955    0.9093 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0620    0.5215   -0.2726 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2166   -0.6030   -1.0093 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9936   -1.1013   -1.2787 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0467   -0.3177   -0.7283 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3471   -0.5401   -0.8112 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1266    0.6096   -0.7487 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4127    0.0990   -0.7556 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4216    1.0139   -0.1308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5070    2.2447   -0.7722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3860   -1.1777    0.0507 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1658   -1.1060    1.1917 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9065   -1.3114    0.3799 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4834   -2.6165    0.4155 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7008    0.6824   -0.1081 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0607    1.6970    0.5786 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7886    0.0714   -0.1501 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2222    1.7947   -0.0999 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8652   -2.0052   -1.8597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6728   -1.0927   -1.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6890   -0.0944   -1.8222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1954    1.1293    0.9493 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4104    0.5146   -0.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6756    2.9245   -0.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6566   -2.0252   -0.6158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8108   -1.8781    1.1562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6559   -0.7943    1.3383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9661   -3.1972   -0.1996 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0922    1.7183    1.6076 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
  7 17  1  0
 17 18  1  0
 17  4  2  0
 15  8  1  0
  1 19  1  0
  1 20  1  0
  6 21  1  0
  8 22  1  6
 10 23  1  6
 11 24  1  0
 11 25  1  0
 12 26  1  0
 13 27  1  6
 14 28  1  0
 15 29  1  1
 16 30  1  0
 18 31  1  0
M  END


  Mrv1652306242105153D          

 31 32  0  0  0  0            999 V2000
    5.4780    1.0696   -0.0235 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1204    1.3748    0.2345 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8421    2.3955    0.9093 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0620    0.5215   -0.2726 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2166   -0.6030   -1.0093 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9936   -1.1013   -1.2787 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0467   -0.3177   -0.7283 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3471   -0.5401   -0.8112 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1266    0.6096   -0.7487 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4127    0.0990   -0.7556 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4216    1.0139   -0.1308 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5070    2.2447   -0.7722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3860   -1.1777    0.0507 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1658   -1.1060    1.1917 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9065   -1.3114    0.3799 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4834   -2.6165    0.4155 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7008    0.6824   -0.1081 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0607    1.6970    0.5786 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7886    0.0714   -0.1501 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2222    1.7947   -0.0999 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8652   -2.0052   -1.8597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6728   -1.0927   -1.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6890   -0.0944   -1.8222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1954    1.1293    0.9493 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4104    0.5146   -0.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6756    2.9245   -0.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6566   -2.0252   -0.6158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8108   -1.8781    1.1562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6559   -0.7943    1.3383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9661   -3.1972   -0.1996 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0922    1.7183    1.6076 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
  7 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17  4  2  0  0  0  0
 15  8  1  0  0  0  0
  1 19  1  0  0  0  0
  1 20  1  0  0  0  0
  6 21  1  0  0  0  0
  8 22  1  6  0  0  0
 10 23  1  6  0  0  0
 11 24  1  0  0  0  0
 11 25  1  0  0  0  0
 12 26  1  0  0  0  0
 13 27  1  6  0  0  0
 14 28  1  0  0  0  0
 15 29  1  1  0  0  0
 16 30  1  0  0  0  0
 18 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021419

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C(N=C([H])N1[C@]1([H])O[C@]([H])(C([H])([H])O[H])[C@]([H])(O[H])[C@@]1([H])O[H])C(=O)N([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C9H13N3O6/c10-7(16)4-8(17)12(2-11-4)9-6(15)5(14)3(1-13)18-9/h2-3,5-6,9,13-15,17H,1H2,(H2,10,16)/t3-,5+,6-,9-/m1/s1

> <INCHI_KEY>
HZQDCMWJEBCWBR-UHFFFAOYSA-N

> <FORMULA>
C9H13N3O6

> <MOLECULAR_WEIGHT>
259.218

> <EXACT_MASS>
259.080435151

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
23.947763378560303

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-hydroxy-1H-imidazole-4-carboxamide

> <ALOGPS_LOGP>
-2.31

> <JCHEM_LOGP>
-2.0329590416666665

> <ALOGPS_LOGS>
-0.86

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.455592823977959

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.184760159262554

> <JCHEM_PKA_STRONGEST_BASIC>
2.771530121505014

> <JCHEM_POLAR_SURFACE_AREA>
151.06

> <JCHEM_REFRACTIVITY>
55.54969999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.61e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-hydroxyimidazole-4-carboxamide

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 31 32  0  0  0  0  0  0  0  0999 V2000
    5.4780    1.0696   -0.0235 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1204    1.3748    0.2345 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8421    2.3955    0.9093 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0620    0.5215   -0.2726 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2166   -0.6030   -1.0093 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9936   -1.1013   -1.2787 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0467   -0.3177   -0.7283 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3471   -0.5401   -0.8112 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1266    0.6096   -0.7487 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4127    0.0990   -0.7556 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4216    1.0139   -0.1308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5070    2.2447   -0.7722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3860   -1.1777    0.0507 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1658   -1.1060    1.1917 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9065   -1.3114    0.3799 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4834   -2.6165    0.4155 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7008    0.6824   -0.1081 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0607    1.6970    0.5786 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7886    0.0714   -0.1501 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2222    1.7947   -0.0999 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8652   -2.0052   -1.8597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6728   -1.0927   -1.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6890   -0.0944   -1.8222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1954    1.1293    0.9493 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4104    0.5146   -0.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6756    2.9245   -0.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6566   -2.0252   -0.6158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8108   -1.8781    1.1562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6559   -0.7943    1.3383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9661   -3.1972   -0.1996 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0922    1.7183    1.6076 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
  7 17  1  0
 17 18  1  0
 17  4  2  0
 15  8  1  0
  1 19  1  0
  1 20  1  0
  6 21  1  0
  8 22  1  6
 10 23  1  6
 11 24  1  0
 11 25  1  0
 12 26  1  0
 13 27  1  6
 14 28  1  0
 15 29  1  1
 16 30  1  0
 18 31  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  N   UNK     0       5.478   1.070  -0.024  0.00  0.00           N+0
HETATM    2  C   UNK     0       4.120   1.375   0.235  0.00  0.00           C+0
HETATM    3  O   UNK     0       3.842   2.396   0.909  0.00  0.00           O+0
HETATM    4  C   UNK     0       3.062   0.522  -0.273  0.00  0.00           C+0
HETATM    5  N   UNK     0       3.217  -0.603  -1.009  0.00  0.00           N+0
HETATM    6  C   UNK     0       1.994  -1.101  -1.279  0.00  0.00           C+0
HETATM    7  N   UNK     0       1.047  -0.318  -0.728  0.00  0.00           N+0
HETATM    8  C   UNK     0      -0.347  -0.540  -0.811  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.127   0.610  -0.749  0.00  0.00           O+0
HETATM   10  C   UNK     0      -2.413   0.099  -0.756  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.422   1.014  -0.131  0.00  0.00           C+0
HETATM   12  O   UNK     0      -3.507   2.245  -0.772  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.386  -1.178   0.051  0.00  0.00           C+0
HETATM   14  O   UNK     0      -3.166  -1.106   1.192  0.00  0.00           O+0
HETATM   15  C   UNK     0      -0.907  -1.311   0.380  0.00  0.00           C+0
HETATM   16  O   UNK     0      -0.483  -2.616   0.416  0.00  0.00           O+0
HETATM   17  C   UNK     0       1.701   0.682  -0.108  0.00  0.00           C+0
HETATM   18  O   UNK     0       1.061   1.697   0.579  0.00  0.00           O+0
HETATM   19  H   UNK     0       5.789   0.071  -0.150  0.00  0.00           H+0
HETATM   20  H   UNK     0       6.222   1.795  -0.100  0.00  0.00           H+0
HETATM   21  H   UNK     0       1.865  -2.005  -1.860  0.00  0.00           H+0
HETATM   22  H   UNK     0      -0.673  -1.093  -1.718  0.00  0.00           H+0
HETATM   23  H   UNK     0      -2.689  -0.094  -1.822  0.00  0.00           H+0
HETATM   24  H   UNK     0      -3.195   1.129   0.949  0.00  0.00           H+0
HETATM   25  H   UNK     0      -4.410   0.515  -0.201  0.00  0.00           H+0
HETATM   26  H   UNK     0      -3.676   2.925  -0.070  0.00  0.00           H+0
HETATM   27  H   UNK     0      -2.657  -2.025  -0.616  0.00  0.00           H+0
HETATM   28  H   UNK     0      -3.811  -1.878   1.156  0.00  0.00           H+0
HETATM   29  H   UNK     0      -0.656  -0.794   1.338  0.00  0.00           H+0
HETATM   30  H   UNK     0      -0.966  -3.197  -0.200  0.00  0.00           H+0
HETATM   31  H   UNK     0       1.092   1.718   1.608  0.00  0.00           H+0
CONECT    1    2   19   20                                                  
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   17                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   21                                                  
CONECT    7    6    8   17                                                  
CONECT    8    7    9   15   22                                             
CONECT    9    8   10                                                       
CONECT   10    9   11   13   23                                             
CONECT   11   10   12   24   25                                             
CONECT   12   11   26                                                       
CONECT   13   10   14   15   27                                             
CONECT   14   13   28                                                       
CONECT   15   13   16    8   29                                             
CONECT   16   15   30                                                       
CONECT   17    7   18    4                                                  
CONECT   18   17   31                                                       
CONECT   19    1                                                            
CONECT   20    1                                                            
CONECT   21    6                                                            
CONECT   22    8                                                            
CONECT   23   10                                                            
CONECT   24   11                                                            
CONECT   25   11                                                            
CONECT   26   12                                                            
CONECT   27   13                                                            
CONECT   28   14                                                            
CONECT   29   15                                                            
CONECT   30   16                                                            
CONECT   31   18                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   64    0
END

RDKit          3D

31 32  0  0  0  0  0  0  0  0999 V2000
    5.4780    1.0696   -0.0235 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1204    1.3748    0.2345 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8421    2.3955    0.9093 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0620    0.5215   -0.2726 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2166   -0.6030   -1.0093 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9936   -1.1013   -1.2787 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0467   -0.3177   -0.7283 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3471   -0.5401   -0.8112 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1266    0.6096   -0.7487 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4127    0.0990   -0.7556 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4216    1.0139   -0.1308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5070    2.2447   -0.7722 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3860   -1.1777    0.0507 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1658   -1.1060    1.1917 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9065   -1.3114    0.3799 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4834   -2.6165    0.4155 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7008    0.6824   -0.1081 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0607    1.6970    0.5786 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7886    0.0714   -0.1501 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2222    1.7947   -0.0999 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8652   -2.0052   -1.8597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6728   -1.0927   -1.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6890   -0.0944   -1.8222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1954    1.1293    0.9493 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4104    0.5146   -0.2005 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6756    2.9245   -0.0700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6566   -2.0252   -0.6158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8108   -1.8781    1.1562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6559   -0.7943    1.3383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9661   -3.1972   -0.1996 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0922    1.7183    1.6076 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 10 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
  7 17  1  0
 17 18  1  0
 17  4  2  0
 15  8  1  0
  1 19  1  0
  1 20  1  0
  6 21  1  0
  8 22  1  6
 10 23  1  6
 11 24  1  0
 11 25  1  0
 12 26  1  0
 13 27  1  6
 14 28  1  0
 15 29  1  1
 16 30  1  0
 18 31  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₉H₁₃N₃O₆

Average Mass

259.2180 Da

Monoisotopic Mass

259.08044 Da

IUPAC Name

1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-hydroxy-1H-imidazole-4-carboxamide

Traditional Name

1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-hydroxyimidazole-4-carboxamide

CAS Registry Number

Not Available

SMILES

NC(=O)C1=C(O)N(C=N1)C1OC(CO)C(O)C1O

InChI Identifier

InChI=1S/C9H13N3O6/c10-7(16)4-8(17)12(2-11-4)9-6(15)5(14)3(1-13)18-9/h2-3,5-6,9,13-15,17H,1H2,(H2,10,16)

InChI Key

HZQDCMWJEBCWBR-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Eupenicillium brefeldianum M-2166	Fungi	KNApSAcK
Penicillium brefeldianum	NPAtlas	4616933

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1-ribosyl-imidazolecarboxamides. These are organic compounds containing the imidazole ring linked to a ribose ring through a 1-2 bond.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Imidazole ribonucleosides and ribonucleotides

Sub Class

1-ribosyl-imidazolecarboxamides

Direct Parent

1-ribosyl-imidazolecarboxamides

Alternative Parents

Not Available

Substituents

Not Available

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.3	ALOGPS
logP	-2	ChemAxon
logS	-0.86	ALOGPS
pKa (Strongest Acidic)	7.18	ChemAxon
pKa (Strongest Basic)	2.77	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	151.06 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	55.55 m³·mol⁻¹	ChemAxon
Polarizability	23.95 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA018742

HMDB ID

HMDB0255794

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4068

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

4213

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Mizuno K, Tsujino M, Takada M, Hayashi M, Atsumi K: Studies on bredinin. I. Isolation, characterization and biological properties. J Antibiot (Tokyo). 1974 Oct;27(10):775-82. doi: 10.7164/antibiotics.27.775. [PubMed:4616933 ]

Showing NP-Card for Bredinin (NP0021419)

MOL for NP0021419 (Bredinin)

3D MOL for NP0021419 (Bredinin)

3D SDF for NP0021419 (Bredinin)

3D-SDF for NP0021419 (Bredinin)

PDB for NP0021419 (Bredinin)

3D PDB for NP0021419 (Bredinin)

SMILES for NP0021419 (Bredinin)

INCHI for NP0021419 (Bredinin)

Structure for NP0021419 (Bredinin)

3D Structure for NP0021419 (Bredinin)