Np mrd loader

Record Information
Version2.0
Created at2021-01-06 06:37:33 UTC
Updated at2021-07-15 17:36:10 UTC
NP-MRD IDNP0021369
Secondary Accession NumbersNone
Natural Product Identification
Common NameSiomycin C
Provided ByNPAtlasNPAtlas Logo
Description Siomycin C is found in Streptomyces sioyaensis. Based on a literature review very few articles have been published on 2-[({2-[(11Z,15R,18S,26R,35R,46R,53S,59S)-18-[(3S)-2,3-dihydroxybutan-2-yl]-11-ethylidene-6,9,16,23,38,41,44,47,59-nonahydroxy-8,60-bis[(1S)-1-hydroxyethyl]-26,46-dimethyl-40,43-dimethylidene-28-oxo-37-(propan-2-yl)-27-oxa-3,13,20,56-tetrathia-7,10,17,24,30,36,39,42,45,48,52,58,62,63,64-pentadecaazanonacyclo[23.23.9.2²⁹,³².1²,⁵.1¹²,¹⁵.1¹⁹,²².1³¹,³⁵.1⁵⁴,⁵⁷.0¹,⁵³]Tetrahexaconta-2(64),4,6,9,12(63),16,19(62),21,23,29,31,33,38,41,44,47,51,54,57,60-icosaen-51-yl]-1,3-thiazol-4-yl}(hydroxy)methylidene)amino]-N-(3-methoxy-3-oxoprop-1-en-2-yl)prop-2-enimidic acid.
Structure
Thumb
Synonyms
ValueSource
2-[({2-[(11Z,15R,18S,26R,35R,46R,53S,59S)-18-[(3S)-2,3-dihydroxybutan-2-yl]-11-ethylidene-6,9,16,23,38,41,44,47,59-nonahydroxy-8,60-bis[(1S)-1-hydroxyethyl]-26,46-dimethyl-40,43-dimethylidene-28-oxo-37-(propan-2-yl)-27-oxa-3,13,20,56-tetrathia-7,10,17,24,30,36,39,42,45,48,52,58,62,63,64-pentadecaazanonacyclo[23.23.9.2,.1,.1,.1,.1,.1,.0,]tetrahexaconta-2(64),4,6,9,12(63),16,19(62),21,23,29,31,33,38,41,44,47,51,54,57,60-icosaen-51-yl]-1,3-thiazol-4-yl}(hydroxy)methylidene)amino]-N-(3-methoxy-3-oxoprop-1-en-2-yl)prop-2-enimidateGenerator
Chemical FormulaC72H82N18O19S5
Average Mass1663.8600 Da
Monoisotopic Mass1662.46072 Da
IUPAC Namemethyl 2-[2-({2-[(1R,8R,11Z,15R,18S,25S,26R,35R,37R,46R,53S,59S)-18-[(2S,3S)-2,3-dihydroxybutan-2-yl]-11-ethylidene-59-hydroxy-8,60-bis[(1S)-1-hydroxyethyl]-26,46-dimethyl-40,43-dimethylidene-6,9,16,23,28,38,41,44,47-nonaoxo-37-(propan-2-yl)-27-oxa-3,13,20,56-tetrathia-7,10,17,24,30,36,39,42,45,48,52,58,62,63,64-pentadecaazanonacyclo[23.23.9.2^{29,32}.1^{2,5}.1^{12,15}.1^{19,22}.1^{31,35}.1^{54,57}.0^{1,53}]tetrahexaconta-2(64),4,12(63),19(62),21,29(61),30,32(60),33,51,54,57-dodecaen-51-yl]-1,3-thiazol-4-yl}formamido)prop-2-enamido]prop-2-enoate
Traditional Namemethyl 2-[2-({2-[(1R,8R,11Z,15R,18S,25S,26R,35R,37R,46R,53S,59S)-18-[(2S,3S)-2,3-dihydroxybutan-2-yl]-11-ethylidene-59-hydroxy-8,60-bis[(1S)-1-hydroxyethyl]-37-isopropyl-26,46-dimethyl-40,43-dimethylidene-6,9,16,23,28,38,41,44,47-nonaoxo-27-oxa-3,13,20,56-tetrathia-7,10,17,24,30,36,39,42,45,48,52,58,62,63,64-pentadecaazanonacyclo[23.23.9.2^{29,32}.1^{2,5}.1^{12,15}.1^{19,22}.1^{31,35}.1^{54,57}.0^{1,53}]tetrahexaconta-2(64),4,12(63),19(62),21,29(61),30,32(60),33,51,54,57-dodecaen-51-yl]-1,3-thiazol-4-yl}formamido)prop-2-enamido]prop-2-enoate
CAS Registry NumberNot Available
SMILES
COC(=O)C(=C)NC(=O)C(=C)NC(=O)C1=CSC(=N1)C1=N[C@@H]2C3=CSC(=N3)C3NC(=O)C4=CSC(=N4)[C@@H](NC(=O)[C@@H]4CSC(=N4)\C(NC(=O)C(NC(=O)C4=CSC(=N4)C2(CC1)NC(=O)[C@@H](C)NC(=O)C(=C)NC(=O)C(=C)NC(=O)C(N[C@@H]1C=CC2=C(C=C(N=C2[C@H]1O)C(=O)O[C@@H]3C)[C@H](C)O)C(C)C)[C@H](C)O)=C\C)C(C)(O)[C@H](C)O
InChI Identifier
InChI=1S/C72H82N18O19S5/c1-15-38-64-83-45(23-110-64)61(102)89-53(71(13,107)35(12)93)67-85-44(24-113-67)59(100)88-49-34(11)109-69(106)41-20-37(32(9)91)36-16-17-39(51(94)50(36)79-41)78-47(26(2)3)62(103)76-29(6)55(96)73-27(4)54(95)74-30(7)57(98)90-72(70-86-46(25-114-70)60(101)87-48(33(10)92)63(104)81-38)19-18-40(80-52(72)42-21-112-66(49)82-42)65-84-43(22-111-65)58(99)75-28(5)56(97)77-31(8)68(105)108-14/h15-17,20-22,24-26,30,32-35,39,45,47-49,51-53,78,91-94,107H,4-6,8,18-19,23H2,1-3,7,9-14H3,(H,73,96)(H,74,95)(H,75,99)(H,76,103)(H,77,97)(H,81,104)(H,87,101)(H,88,100)(H,89,102)(H,90,98)/b38-15-/t30-,32+,33+,34-,35+,39-,45+,47?,48?,49?,51+,52-,53-,71?,72?/m1/s1
InChI KeyGJTQKLKJLXFSOM-FDYYQTTASA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sioyaensisNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.57ALOGPS
logP-1.1ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)10.48ChemAxon
pKa (Strongest Basic)7.12ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count25ChemAxon
Hydrogen Donor Count16ChemAxon
Polar Surface Area545.95 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity413.35 m³·mol⁻¹ChemAxon
Polarizability166.81 ųChemAxon
Number of Rings10ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA012710
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78445226
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139586627
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References