NP-MRD: Showing NP-Card for Leucyl-3-epi-deoxynegamycin (NP0021355)

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Record Information

Version

2.0

Created at

2021-01-06 06:36:52 UTC

Updated at

2021-07-15 17:36:07 UTC

NP-MRD ID

NP0021355

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Leucyl-3-epi-deoxynegamycin

Provided By

NPAtlas

Description

Leucyl-3-epi-deoxynegamycin is found in Streptomyces and Streptomyces goshikiensis. Leucyl-3-epi-deoxynegamycin was first documented in 1977 (PMID: 413822). Based on a literature review very few articles have been published on Leucyl-3-epi-deoxynegamycin (PMID: 29057051).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242120423D          

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     RDKit          3D

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  Mrv1652306242120423D          

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    1.3540   -0.8707    3.3268 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3895   -0.9475    1.9203 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9305    1.7192    1.7837 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6778    1.0929    3.2635 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2027    2.4018    2.9319 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0784    0.8456    3.7142 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5028   -0.4275   -1.9203 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8561   -1.8579   -0.9801 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8070   -1.9190   -2.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0899    0.0522   -2.9458 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4744    0.3975   -3.5936 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2470   -1.1903   -3.9807 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2939    0.5175   -0.7432 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7869   -1.0511    0.0834 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3476   -1.2761    0.4679 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
  1 25  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
  2 28  1  1  0  0  0
  3 29  1  0  0  0  0
  3 30  1  0  0  0  0
  3 31  1  0  0  0  0
  4 32  1  0  0  0  0
  4 33  1  0  0  0  0
  5 34  1  6  0  0  0
  6 35  1  0  0  0  0
  6 36  1  0  0  0  0
  9 37  1  0  0  0  0
 10 38  1  1  0  0  0
 11 39  1  0  0  0  0
 11 40  1  0  0  0  0
 12 41  1  0  0  0  0
 12 42  1  0  0  0  0
 13 43  1  0  0  0  0
 13 44  1  0  0  0  0
 14 45  1  0  0  0  0
 14 46  1  0  0  0  0
 15 47  1  0  0  0  0
 15 48  1  0  0  0  0
 18 49  1  0  0  0  0
 20 50  1  0  0  0  0
 20 51  1  0  0  0  0
 20 52  1  0  0  0  0
 21 53  1  0  0  0  0
 21 54  1  0  0  0  0
 24 55  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0021355

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C([H])([H])N(N([H])C(=O)C([H])([H])[C@@]([H])(N([H])C(=O)[C@@]([H])(N([H])[H])C([H])([H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])N([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C15H31N5O4/c1-10(2)7-12(17)15(24)18-11(5-4-6-16)8-13(21)19-20(3)9-14(22)23/h10-12H,4-9,16-17H2,1-3H3,(H,18,24)(H,19,21)(H,22,23)/t11-,12-/m0/s1

> <INCHI_KEY>
DOTQAYWMWCUEBC-RYUDHWBXSA-N

> <FORMULA>
C15H31N5O4

> <MOLECULAR_WEIGHT>
345.444

> <EXACT_MASS>
345.237604498

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
37.71069685829077

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(3S)-6-amino-3-[(2S)-2-amino-4-methylpentanamido]-N'-methylhexanehydrazido]acetic acid

> <ALOGPS_LOGP>
-2.00

> <JCHEM_LOGP>
-4.212803239232188

> <ALOGPS_LOGS>
-2.01

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
12.650111075501613

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.92487055950597

> <JCHEM_PKA_STRONGEST_BASIC>
9.916839883758257

> <JCHEM_POLAR_SURFACE_AREA>
150.78

> <JCHEM_REFRACTIVITY>
89.80399999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.41e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(3S)-6-amino-3-[(2S)-2-amino-4-methylpentanamido]-N'-methylhexanehydrazido]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 55 54  0  0  0  0  0  0  0  0999 V2000
   -6.0258    1.4670    1.5308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9222    1.3977    0.4668 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.5100    2.0464   -0.7860 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6733   -0.0482    0.2085 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6073   -0.3338   -0.8216 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5208   -1.7826   -0.9231 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2963    0.2055   -0.4678 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1216    1.4606   -0.3649 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2144   -0.6344   -0.2361 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1570   -0.1224    0.1320 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3211   -0.6664    1.5042 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5124   -0.3925    2.2943 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7735    1.0534    2.6224 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6842    1.6272    3.3998 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0055   -0.7279   -0.9393 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4138   -0.4490   -0.9735 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0029    0.4021   -0.2859 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2549   -1.1969   -1.8663 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6092   -1.0212   -1.9832 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.0869   -0.4172   -3.1740 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2758   -0.5923   -0.7989 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6851   -1.0896   -0.8041 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0800   -1.7628   -1.7635 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5009   -0.7704    0.2829 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9236    2.4461    2.0643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9888    1.4166    1.0173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8868    0.6051    2.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0770    1.9584    0.8591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7929    3.1007   -0.5816 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8176    1.9748   -1.6496 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4492    1.5391   -1.0858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4818   -0.5992    1.1514 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6234   -0.4815   -0.2026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8925    0.0487   -1.8187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7611   -2.2748   -0.0363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1341   -2.0982   -1.7294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2836   -1.6564   -0.3016 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0636    0.9606    0.1165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5847   -0.2943    2.0819 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1237   -1.7846    1.4759 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3540   -0.8707    3.3268 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3895   -0.9475    1.9203 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9305    1.7192    1.7837 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6778    1.0929    3.2635 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2027    2.4018    2.9319 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0784    0.8456    3.7142 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5028   -0.4275   -1.9203 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8561   -1.8579   -0.9801 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8070   -1.9190   -2.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0899    0.0522   -2.9458 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4744    0.3975   -3.5936 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2470   -1.1903   -3.9807 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2939    0.5175   -0.7432 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7869   -1.0511    0.0834 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3476   -1.2761    0.4679 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 10 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 19 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  1
  3 29  1  0
  3 30  1  0
  3 31  1  0
  4 32  1  0
  4 33  1  0
  5 34  1  6
  6 35  1  0
  6 36  1  0
  9 37  1  0
 10 38  1  1
 11 39  1  0
 11 40  1  0
 12 41  1  0
 12 42  1  0
 13 43  1  0
 13 44  1  0
 14 45  1  0
 14 46  1  0
 15 47  1  0
 15 48  1  0
 18 49  1  0
 20 50  1  0
 20 51  1  0
 20 52  1  0
 21 53  1  0
 21 54  1  0
 24 55  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -6.026   1.467   1.531  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.922   1.398   0.467  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.510   2.046  -0.786  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.673  -0.048   0.209  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.607  -0.334  -0.822  0.00  0.00           C+0
HETATM    6  N   UNK     0      -3.521  -1.783  -0.923  0.00  0.00           N+0
HETATM    7  C   UNK     0      -2.296   0.206  -0.468  0.00  0.00           C+0
HETATM    8  O   UNK     0      -2.122   1.461  -0.365  0.00  0.00           O+0
HETATM    9  N   UNK     0      -1.214  -0.634  -0.236  0.00  0.00           N+0
HETATM   10  C   UNK     0       0.157  -0.122   0.132  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.321  -0.666   1.504  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.512  -0.393   2.294  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.774   1.053   2.622  0.00  0.00           C+0
HETATM   14  N   UNK     0       0.684   1.627   3.400  0.00  0.00           N+0
HETATM   15  C   UNK     0       1.006  -0.728  -0.939  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.414  -0.449  -0.974  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.003   0.402  -0.286  0.00  0.00           O+0
HETATM   18  N   UNK     0       3.255  -1.197  -1.866  0.00  0.00           N+0
HETATM   19  N   UNK     0       4.609  -1.021  -1.983  0.00  0.00           N+0
HETATM   20  C   UNK     0       5.087  -0.417  -3.174  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.276  -0.592  -0.799  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.685  -1.090  -0.804  0.00  0.00           C+0
HETATM   23  O   UNK     0       7.080  -1.763  -1.764  0.00  0.00           O+0
HETATM   24  O   UNK     0       7.501  -0.770   0.283  0.00  0.00           O+0
HETATM   25  H   UNK     0      -5.924   2.446   2.064  0.00  0.00           H+0
HETATM   26  H   UNK     0      -6.989   1.417   1.017  0.00  0.00           H+0
HETATM   27  H   UNK     0      -5.887   0.605   2.226  0.00  0.00           H+0
HETATM   28  H   UNK     0      -4.077   1.958   0.859  0.00  0.00           H+0
HETATM   29  H   UNK     0      -5.793   3.101  -0.582  0.00  0.00           H+0
HETATM   30  H   UNK     0      -4.818   1.975  -1.650  0.00  0.00           H+0
HETATM   31  H   UNK     0      -6.449   1.539  -1.086  0.00  0.00           H+0
HETATM   32  H   UNK     0      -4.482  -0.599   1.151  0.00  0.00           H+0
HETATM   33  H   UNK     0      -5.623  -0.482  -0.203  0.00  0.00           H+0
HETATM   34  H   UNK     0      -3.893   0.049  -1.819  0.00  0.00           H+0
HETATM   35  H   UNK     0      -3.761  -2.275  -0.036  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.134  -2.098  -1.729  0.00  0.00           H+0
HETATM   37  H   UNK     0      -1.284  -1.656  -0.302  0.00  0.00           H+0
HETATM   38  H   UNK     0       0.064   0.961   0.117  0.00  0.00           H+0
HETATM   39  H   UNK     0      -0.585  -0.294   2.082  0.00  0.00           H+0
HETATM   40  H   UNK     0       0.124  -1.785   1.476  0.00  0.00           H+0
HETATM   41  H   UNK     0       1.354  -0.871   3.327  0.00  0.00           H+0
HETATM   42  H   UNK     0       2.389  -0.948   1.920  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.931   1.719   1.784  0.00  0.00           H+0
HETATM   44  H   UNK     0       2.678   1.093   3.264  0.00  0.00           H+0
HETATM   45  H   UNK     0       0.203   2.402   2.932  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.078   0.846   3.714  0.00  0.00           H+0
HETATM   47  H   UNK     0       0.503  -0.428  -1.920  0.00  0.00           H+0
HETATM   48  H   UNK     0       0.856  -1.858  -0.980  0.00  0.00           H+0
HETATM   49  H   UNK     0       2.807  -1.919  -2.464  0.00  0.00           H+0
HETATM   50  H   UNK     0       6.090   0.052  -2.946  0.00  0.00           H+0
HETATM   51  H   UNK     0       4.474   0.398  -3.594  0.00  0.00           H+0
HETATM   52  H   UNK     0       5.247  -1.190  -3.981  0.00  0.00           H+0
HETATM   53  H   UNK     0       5.294   0.518  -0.743  0.00  0.00           H+0
HETATM   54  H   UNK     0       4.787  -1.051   0.083  0.00  0.00           H+0
HETATM   55  H   UNK     0       8.348  -1.276   0.468  0.00  0.00           H+0
CONECT    1    2   25   26   27                                             
CONECT    2    1    3    4   28                                             
CONECT    3    2   29   30   31                                             
CONECT    4    2    5   32   33                                             
CONECT    5    4    6    7   34                                             
CONECT    6    5   35   36                                                  
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   37                                                  
CONECT   10    9   11   15   38                                             
CONECT   11   10   12   39   40                                             
CONECT   12   11   13   41   42                                             
CONECT   13   12   14   43   44                                             
CONECT   14   13   45   46                                                  
CONECT   15   10   16   47   48                                             
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   49                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19   50   51   52                                             
CONECT   21   19   22   53   54                                             
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   55                                                       
CONECT   25    1                                                            
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    2                                                            
CONECT   29    3                                                            
CONECT   30    3                                                            
CONECT   31    3                                                            
CONECT   32    4                                                            
CONECT   33    4                                                            
CONECT   34    5                                                            
CONECT   35    6                                                            
CONECT   36    6                                                            
CONECT   37    9                                                            
CONECT   38   10                                                            
CONECT   39   11                                                            
CONECT   40   11                                                            
CONECT   41   12                                                            
CONECT   42   12                                                            
CONECT   43   13                                                            
CONECT   44   13                                                            
CONECT   45   14                                                            
CONECT   46   14                                                            
CONECT   47   15                                                            
CONECT   48   15                                                            
CONECT   49   18                                                            
CONECT   50   20                                                            
CONECT   51   20                                                            
CONECT   52   20                                                            
CONECT   53   21                                                            
CONECT   54   21                                                            
CONECT   55   24                                                            
MASTER        0    0    0    0    0    0    0    0   55    0  108    0
END

RDKit          3D

55 54  0  0  0  0  0  0  0  0999 V2000
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   -3.8925    0.0487   -1.8187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7611   -2.2748   -0.0363 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1341   -2.0982   -1.7294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2836   -1.6564   -0.3016 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5847   -0.2943    2.0819 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1237   -1.7846    1.4759 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3540   -0.8707    3.3268 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3895   -0.9475    1.9203 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9305    1.7192    1.7837 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6778    1.0929    3.2635 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2027    2.4018    2.9319 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0784    0.8456    3.7142 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5028   -0.4275   -1.9203 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8561   -1.8579   -0.9801 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8070   -1.9190   -2.4637 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.4744    0.3975   -3.5936 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2470   -1.1903   -3.9807 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2939    0.5175   -0.7432 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7869   -1.0511    0.0834 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3476   -1.2761    0.4679 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
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 10 15  1  0
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  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  1
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  4 32  1  0
  4 33  1  0
  5 34  1  6
  6 35  1  0
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 15 47  1  0
 15 48  1  0
 18 49  1  0
 20 50  1  0
 20 51  1  0
 20 52  1  0
 21 53  1  0
 21 54  1  0
 24 55  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
2-({[(3S)-6-amino-3-{[(2S)-2-amino-1-hydroxy-4-methylpentylidene]amino}-1-hydroxyhexylidene]amino}(methyl)amino)acetate	Generator

Chemical Formula

C₁₅H₃₁N₅O₄

Average Mass

345.4440 Da

Monoisotopic Mass

345.23760 Da

IUPAC Name

2-[(3S)-6-amino-3-[(2S)-2-amino-4-methylpentanamido]-N'-methylhexanehydrazido]acetic acid

Traditional Name

[(3S)-6-amino-3-[(2S)-2-amino-4-methylpentanamido]-N'-methylhexanehydrazido]acetic acid

CAS Registry Number

Not Available

SMILES

CC(C)C[C@H](N)C(=O)N[C@@H](CCCN)CC(=O)NN(C)CC(O)=O

InChI Identifier

InChI=1S/C15H31N5O4/c1-10(2)7-12(17)15(24)18-11(5-4-6-16)8-13(21)19-20(3)9-14(22)23/h10-12H,4-9,16-17H2,1-3H3,(H,18,24)(H,19,21)(H,22,23)/t11-,12-/m0/s1

InChI Key

DOTQAYWMWCUEBC-RYUDHWBXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	413822
Streptomyces goshikiensis	LOTUS Database	35616633

Species Where Detected

Species Name	Source	Reference
Streptomyces goshikiensis No.MD967-A2	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2	ALOGPS
logP	-4.2	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	3.92	ChemAxon
pKa (Strongest Basic)	9.92	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	150.78 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	89.8 m³·mol⁻¹	ChemAxon
Polarizability	37.71 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA021108

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00018167

Chemspider ID

78443134

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102439777

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kondo S, Yoshida K, Ikeda T, Iinuma K, Honma Y, Hamada M, Umezawa H: 3-epi-deoxynegamycin and leucyl-3-epi-deoxynegamycin produced by Streptomyces. J Antibiot (Tokyo). 1977 Dec;30(12):1137-9. doi: 10.7164/antibiotics.30.1137. [PubMed:413822 ]
Taguchi A, Hamada K, Shiozuka M, Kobayashi M, Murakami S, Takayama K, Taniguchi A, Usui T, Matsuda R, Hayashi Y: Structure-Activity Relationship Study of Leucyl-3-epi-deoxynegamycin for Potent Premature Termination Codon Readthrough. ACS Med Chem Lett. 2017 Sep 29;8(10):1060-1065. doi: 10.1021/acsmedchemlett.7b00269. eCollection 2017 Oct 12. [PubMed:29057051 ]

Showing NP-Card for Leucyl-3-epi-deoxynegamycin (NP0021355)

MOL for NP0021355 (Leucyl-3-epi-deoxynegamycin)

3D MOL for NP0021355 (Leucyl-3-epi-deoxynegamycin)

3D SDF for NP0021355 (Leucyl-3-epi-deoxynegamycin)

3D-SDF for NP0021355 (Leucyl-3-epi-deoxynegamycin)

PDB for NP0021355 (Leucyl-3-epi-deoxynegamycin)

3D PDB for NP0021355 (Leucyl-3-epi-deoxynegamycin)

SMILES for NP0021355 (Leucyl-3-epi-deoxynegamycin)

INCHI for NP0021355 (Leucyl-3-epi-deoxynegamycin)

Structure for NP0021355 (Leucyl-3-epi-deoxynegamycin)

3D Structure for NP0021355 (Leucyl-3-epi-deoxynegamycin)