NP-MRD: Showing NP-Card for Naphthomycin H (NP0021324)

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Record Information

Version

2.0

Created at

2021-01-06 06:35:22 UTC

Updated at

2021-07-15 17:36:03 UTC

NP-MRD ID

NP0021324

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Naphthomycin H

Provided By

NPAtlas

Description

Naphthomycin H is found in Streptomyces and Streptomyces sp. Y8340369. Naphthomycin H was first documented in 1985 (PMID: 4030505). Based on a literature review very few articles have been published on Naphthomycin B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042108033D          

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M  END

     RDKit          3D

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M  END


  Mrv1652307042108033D          

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M  END
> <DATABASE_ID>
NP0021324

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C3=C(C([H])=C1C([H])([H])[H])C(=O)C(N([H])C(=O)\C([H])=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C([H])/[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])C([H])([H])C(=O)\C(=C([H])/C([H])([H])[C@]([H])(O[H])\C([H])=C([H])/[C@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@]([H])(\C([H])=C(/C2=O)C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])=C(Cl)C3=O

> <INCHI_IDENTIFIER>
InChI=1S/C39H44ClNO9/c1-20-11-9-7-8-10-12-30(45)41-34-33(40)39(50)31-27(38(34)49)18-25(6)37(48)32(31)36(47)24(5)17-23(4)35(46)22(3)14-16-26(42)15-13-21(2)29(44)19-28(20)43/h7-14,16-18,20,22-23,26,28,35,42-43,46,48H,15,19H2,1-6H3,(H,41,45)/b8-7-,11-9-,12-10-,16-14-,21-13-,24-17-/t20-,22-,23-,26-,28-,35-/m0/s1

> <INCHI_KEY>
PGLCKEFYXCGUGA-DWSJIZEISA-N

> <FORMULA>
C39H44ClNO9

> <MOLECULAR_WEIGHT>
706.23

> <EXACT_MASS>
705.2704597

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
94

> <JCHEM_AVERAGE_POLARIZABILITY>
73.18221890061795

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(7Z,9S,10S,11S,12Z,14S,16Z,20S,21S,22Z,24Z,26Z)-31-chloro-4,10,14,20-tetrahydroxy-3,7,9,11,17,21-hexamethyl-29-azatricyclo[28.3.1.0^{5,33}]tetratriaconta-1(33),2,4,7,12,16,22,24,26,30-decaene-6,18,28,32,34-pentone

> <ALOGPS_LOGP>
4.36

> <JCHEM_LOGP>
5.224961531000002

> <ALOGPS_LOGS>
-5.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.52663026675338

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.446146455519367

> <JCHEM_PKA_STRONGEST_BASIC>
-0.7503212800181037

> <JCHEM_POLAR_SURFACE_AREA>
178.29999999999998

> <JCHEM_REFRACTIVITY>
201.23730000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.60e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(7Z,9S,10S,11S,12Z,14S,16Z,20S,21S,22Z,24Z,26Z)-31-chloro-4,10,14,20-tetrahydroxy-3,7,9,11,17,21-hexamethyl-29-azatricyclo[28.3.1.0^{5,33}]tetratriaconta-1(33),2,4,7,12,16,22,24,26,30-decaene-6,18,28,32,34-pentone

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 94 96  0  0  0  0  0  0  0  0999 V2000
    4.8567   -3.8539   -1.6941 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1603   -2.9716   -0.6871 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3052   -3.6033    0.1006 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2176   -2.8379    0.7645 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9200   -3.5889    0.7728 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2390   -4.9636    0.6946 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0691   -3.3067   -0.4065 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2022   -2.9253   -0.3609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7125   -2.4065    0.9320 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1773   -3.5956    1.7446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8285   -1.3744    0.7613 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1751   -1.0224    2.0732 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0217   -1.8786    0.0624 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.2007   -1.9352    0.9917 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3237   -1.3449   -1.2762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2871   -0.4868   -1.5470 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1771   -0.7090   -2.7628 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4771    0.6598   -0.6760 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6466    1.0125   -0.4012 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4053    1.4876   -0.0681 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6051    1.7509    1.2764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6716    1.2755    2.0274 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7118    2.5307    1.9700 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9102    2.8314    3.4333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6342    3.0280    1.2941 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4121    2.7765   -0.0539 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3030    1.9917   -0.7739 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9064    1.8474   -2.1446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4474    1.2081   -3.1352 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6735    2.4682   -2.7469 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6827    1.9111   -4.5032 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -0.8146    3.2226   -2.0713 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3795    3.8458   -2.5752 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.6877    3.1807   -2.6053 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5836    3.5834   -3.4418 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0586    2.0794   -1.7532 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0375    2.0394   -0.4344 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4911    3.1755    0.3596 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4880    3.9512   -0.0192 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5564    3.4894   -0.8754 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0643    2.2796   -0.6666 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2384    1.6837    0.6570 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.3101    2.3482    1.4857 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6456    0.2336    0.5117 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.5425   -0.0666    1.5304 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4919   -0.7256    0.5985 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4324   -1.5450   -0.6159 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6388   -0.9544   -1.7197 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1832    3.3926   -0.6643 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5546    4.0718    0.2886 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1106   -4.2638   -2.4317 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3253   -4.7205   -1.2087 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5938   -3.3024   -2.2820 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3376   -4.6631    0.3037 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5300   -2.7317    1.8222 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0397   -1.8743    0.2626 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4331   -3.4499    1.7335 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3442   -5.1764   -0.2596 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5502   -3.4301   -1.3840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8936   -2.9646   -1.1944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8863   -1.9305    1.5346 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2750   -3.7506    1.6912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7174   -4.5466    1.3972 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9576   -3.4588    2.8411 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3720   -0.5512    0.1993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4028   -0.7508    2.6144 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7903   -2.9791   -0.1420 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1157   -1.5131    0.4920 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0516   -1.3760    1.9268 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5044   -2.9908    1.2455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7246   -1.6682   -2.1476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5851    0.2261   -3.1413 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9706   -1.4389   -2.5437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5141   -1.1230   -3.5490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3543    0.6801    1.6623 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9459    3.2536    3.8169 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0573    1.8590    3.9437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7552    3.5337    3.5751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9265    3.6560    1.8755 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5416    4.8512   -3.0155 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4066    1.1184   -2.2073 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6797    1.1578    0.1091 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0104    3.4175    1.3070 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4729    4.9712    0.3337 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9649    4.1048   -1.6969 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3863    1.6688   -1.5273 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3240    1.6924    1.2843 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2834    2.3958    0.9526 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4878    1.6811    2.3659 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9994    3.3180    1.9021 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2094    0.1332   -0.4423 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3000   -0.8766    2.0377 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5863   -0.1146    0.7751 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6145   -1.3328    1.5178 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 16 18  1  0
 18 19  2  0
 18 20  1  0
 20 21  2  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 23 25  2  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  2  0
 28 30  1  0
 30 31  1  0
 30 32  2  0
 32 33  1  0
 33 34  1  0
 34 35  2  0
 34 36  1  0
 36 37  2  0
 37 38  1  0
 38 39  2  0
 39 40  1  0
 40 41  2  0
 41 42  1  0
 42 43  1  0
 42 44  1  0
 44 45  1  0
 44 46  1  0
 46 47  1  0
 47 48  2  0
 32 49  1  0
 49 50  2  0
 47  2  1  0
 27 20  1  0
 49 26  1  0
  1 51  1  0
  1 52  1  0
  1 53  1  0
  3 54  1  0
  4 55  1  0
  4 56  1  0
  5 57  1  1
  6 58  1  0
  7 59  1  0
  8 60  1  0
  9 61  1  1
 10 62  1  0
 10 63  1  0
 10 64  1  0
 11 65  1  6
 12 66  1  0
 13 67  1  6
 14 68  1  0
 14 69  1  0
 14 70  1  0
 15 71  1  0
 17 72  1  0
 17 73  1  0
 17 74  1  0
 22 75  1  0
 24 76  1  0
 24 77  1  0
 24 78  1  0
 25 79  1  0
 33 80  1  0
 36 81  1  0
 37 82  1  0
 38 83  1  0
 39 84  1  0
 40 85  1  0
 41 86  1  0
 42 87  1  1
 43 88  1  0
 43 89  1  0
 43 90  1  0
 44 91  1  6
 45 92  1  0
 46 93  1  0
 46 94  1  0
M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0       4.857  -3.854  -1.694  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.160  -2.972  -0.687  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.305  -3.603   0.101  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.218  -2.838   0.765  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.920  -3.589   0.773  0.00  0.00           C+0
HETATM    6  O   UNK     0       1.239  -4.964   0.695  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.069  -3.307  -0.407  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.202  -2.925  -0.361  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.712  -2.406   0.932  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.177  -3.596   1.745  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.829  -1.374   0.761  0.00  0.00           C+0
HETATM   12  O   UNK     0      -3.175  -1.022   2.073  0.00  0.00           O+0
HETATM   13  C   UNK     0      -4.022  -1.879   0.062  0.00  0.00           C+0
HETATM   14  C   UNK     0      -5.201  -1.935   0.992  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.324  -1.345  -1.276  0.00  0.00           C+0
HETATM   16  C   UNK     0      -5.287  -0.487  -1.547  0.00  0.00           C+0
HETATM   17  C   UNK     0      -6.177  -0.709  -2.763  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.477   0.660  -0.676  0.00  0.00           C+0
HETATM   19  O   UNK     0      -6.647   1.012  -0.401  0.00  0.00           O+0
HETATM   20  C   UNK     0      -4.405   1.488  -0.068  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.605   1.751   1.276  0.00  0.00           C+0
HETATM   22  O   UNK     0      -5.672   1.276   2.027  0.00  0.00           O+0
HETATM   23  C   UNK     0      -3.712   2.531   1.970  0.00  0.00           C+0
HETATM   24  C   UNK     0      -3.910   2.831   3.433  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.634   3.028   1.294  0.00  0.00           C+0
HETATM   26  C   UNK     0      -2.412   2.777  -0.054  0.00  0.00           C+0
HETATM   27  C   UNK     0      -3.303   1.992  -0.774  0.00  0.00           C+0
HETATM   28  C   UNK     0      -2.906   1.847  -2.145  0.00  0.00           C+0
HETATM   29  O   UNK     0      -3.447   1.208  -3.135  0.00  0.00           O+0
HETATM   30  C   UNK     0      -1.674   2.468  -2.747  0.00  0.00           C+0
HETATM   31 Cl   UNK     0      -1.683   1.911  -4.503  0.00  0.00          Cl+0
HETATM   32  C   UNK     0      -0.815   3.223  -2.071  0.00  0.00           C+0
HETATM   33  N   UNK     0       0.380   3.846  -2.575  0.00  0.00           N+0
HETATM   34  C   UNK     0       1.688   3.181  -2.605  0.00  0.00           C+0
HETATM   35  O   UNK     0       2.584   3.583  -3.442  0.00  0.00           O+0
HETATM   36  C   UNK     0       2.059   2.079  -1.753  0.00  0.00           C+0
HETATM   37  C   UNK     0       2.038   2.039  -0.434  0.00  0.00           C+0
HETATM   38  C   UNK     0       2.491   3.176   0.360  0.00  0.00           C+0
HETATM   39  C   UNK     0       3.488   3.951  -0.019  0.00  0.00           C+0
HETATM   40  C   UNK     0       4.556   3.489  -0.875  0.00  0.00           C+0
HETATM   41  C   UNK     0       5.064   2.280  -0.667  0.00  0.00           C+0
HETATM   42  C   UNK     0       5.238   1.684   0.657  0.00  0.00           C+0
HETATM   43  C   UNK     0       6.310   2.348   1.486  0.00  0.00           C+0
HETATM   44  C   UNK     0       5.646   0.234   0.512  0.00  0.00           C+0
HETATM   45  O   UNK     0       6.543  -0.067   1.530  0.00  0.00           O+0
HETATM   46  C   UNK     0       4.492  -0.726   0.599  0.00  0.00           C+0
HETATM   47  C   UNK     0       4.432  -1.545  -0.616  0.00  0.00           C+0
HETATM   48  O   UNK     0       4.639  -0.954  -1.720  0.00  0.00           O+0
HETATM   49  C   UNK     0      -1.183   3.393  -0.664  0.00  0.00           C+0
HETATM   50  O   UNK     0      -0.555   4.072   0.289  0.00  0.00           O+0
HETATM   51  H   UNK     0       4.111  -4.264  -2.432  0.00  0.00           H+0
HETATM   52  H   UNK     0       5.325  -4.721  -1.209  0.00  0.00           H+0
HETATM   53  H   UNK     0       5.594  -3.302  -2.282  0.00  0.00           H+0
HETATM   54  H   UNK     0       3.338  -4.663   0.304  0.00  0.00           H+0
HETATM   55  H   UNK     0       2.530  -2.732   1.822  0.00  0.00           H+0
HETATM   56  H   UNK     0       2.040  -1.874   0.263  0.00  0.00           H+0
HETATM   57  H   UNK     0       0.433  -3.450   1.734  0.00  0.00           H+0
HETATM   58  H   UNK     0       1.344  -5.176  -0.260  0.00  0.00           H+0
HETATM   59  H   UNK     0       0.550  -3.430  -1.384  0.00  0.00           H+0
HETATM   60  H   UNK     0      -1.894  -2.965  -1.194  0.00  0.00           H+0
HETATM   61  H   UNK     0      -0.886  -1.931   1.535  0.00  0.00           H+0
HETATM   62  H   UNK     0      -3.275  -3.751   1.691  0.00  0.00           H+0
HETATM   63  H   UNK     0      -1.717  -4.547   1.397  0.00  0.00           H+0
HETATM   64  H   UNK     0      -1.958  -3.459   2.841  0.00  0.00           H+0
HETATM   65  H   UNK     0      -2.372  -0.551   0.199  0.00  0.00           H+0
HETATM   66  H   UNK     0      -2.403  -0.751   2.614  0.00  0.00           H+0
HETATM   67  H   UNK     0      -3.790  -2.979  -0.142  0.00  0.00           H+0
HETATM   68  H   UNK     0      -6.116  -1.513   0.492  0.00  0.00           H+0
HETATM   69  H   UNK     0      -5.052  -1.376   1.927  0.00  0.00           H+0
HETATM   70  H   UNK     0      -5.504  -2.991   1.246  0.00  0.00           H+0
HETATM   71  H   UNK     0      -3.725  -1.668  -2.148  0.00  0.00           H+0
HETATM   72  H   UNK     0      -6.585   0.226  -3.141  0.00  0.00           H+0
HETATM   73  H   UNK     0      -6.971  -1.439  -2.544  0.00  0.00           H+0
HETATM   74  H   UNK     0      -5.514  -1.123  -3.549  0.00  0.00           H+0
HETATM   75  H   UNK     0      -6.354   0.680   1.662  0.00  0.00           H+0
HETATM   76  H   UNK     0      -2.946   3.254   3.817  0.00  0.00           H+0
HETATM   77  H   UNK     0      -4.057   1.859   3.944  0.00  0.00           H+0
HETATM   78  H   UNK     0      -4.755   3.534   3.575  0.00  0.00           H+0
HETATM   79  H   UNK     0      -1.927   3.656   1.876  0.00  0.00           H+0
HETATM   80  H   UNK     0       0.542   4.851  -3.015  0.00  0.00           H+0
HETATM   81  H   UNK     0       2.407   1.118  -2.207  0.00  0.00           H+0
HETATM   82  H   UNK     0       1.680   1.158   0.109  0.00  0.00           H+0
HETATM   83  H   UNK     0       2.010   3.418   1.307  0.00  0.00           H+0
HETATM   84  H   UNK     0       3.473   4.971   0.334  0.00  0.00           H+0
HETATM   85  H   UNK     0       4.965   4.105  -1.697  0.00  0.00           H+0
HETATM   86  H   UNK     0       5.386   1.669  -1.527  0.00  0.00           H+0
HETATM   87  H   UNK     0       4.324   1.692   1.284  0.00  0.00           H+0
HETATM   88  H   UNK     0       7.283   2.396   0.953  0.00  0.00           H+0
HETATM   89  H   UNK     0       6.488   1.681   2.366  0.00  0.00           H+0
HETATM   90  H   UNK     0       5.999   3.318   1.902  0.00  0.00           H+0
HETATM   91  H   UNK     0       6.209   0.133  -0.442  0.00  0.00           H+0
HETATM   92  H   UNK     0       6.300  -0.877   2.038  0.00  0.00           H+0
HETATM   93  H   UNK     0       3.586  -0.115   0.775  0.00  0.00           H+0
HETATM   94  H   UNK     0       4.614  -1.333   1.518  0.00  0.00           H+0
CONECT    1    2   51   52   53                                             
CONECT    2    1    3   47                                                  
CONECT    3    2    4   54                                                  
CONECT    4    3    5   55   56                                             
CONECT    5    4    6    7   57                                             
CONECT    6    5   58                                                       
CONECT    7    5    8   59                                                  
CONECT    8    7    9   60                                                  
CONECT    9    8   10   11   61                                             
CONECT   10    9   62   63   64                                             
CONECT   11    9   12   13   65                                             
CONECT   12   11   66                                                       
CONECT   13   11   14   15   67                                             
CONECT   14   13   68   69   70                                             
CONECT   15   13   16   71                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16   72   73   74                                             
CONECT   18   16   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   27                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21   75                                                       
CONECT   23   21   24   25                                                  
CONECT   24   23   76   77   78                                             
CONECT   25   23   26   79                                                  
CONECT   26   25   27   49                                                  
CONECT   27   26   28   20                                                  
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   49                                                  
CONECT   33   32   34   80                                                  
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37   81                                                  
CONECT   37   36   38   82                                                  
CONECT   38   37   39   83                                                  
CONECT   39   38   40   84                                                  
CONECT   40   39   41   85                                                  
CONECT   41   40   42   86                                                  
CONECT   42   41   43   44   87                                             
CONECT   43   42   88   89   90                                             
CONECT   44   42   45   46   91                                             
CONECT   45   44   92                                                       
CONECT   46   44   47   93   94                                             
CONECT   47   46   48    2                                                  
CONECT   48   47                                                            
CONECT   49   32   50   26                                                  
CONECT   50   49                                                            
CONECT   51    1                                                            
CONECT   52    1                                                            
CONECT   53    1                                                            
CONECT   54    3                                                            
CONECT   55    4                                                            
CONECT   56    4                                                            
CONECT   57    5                                                            
CONECT   58    6                                                            
CONECT   59    7                                                            
CONECT   60    8                                                            
CONECT   61    9                                                            
CONECT   62   10                                                            
CONECT   63   10                                                            
CONECT   64   10                                                            
CONECT   65   11                                                            
CONECT   66   12                                                            
CONECT   67   13                                                            
CONECT   68   14                                                            
CONECT   69   14                                                            
CONECT   70   14                                                            
CONECT   71   15                                                            
CONECT   72   17                                                            
CONECT   73   17                                                            
CONECT   74   17                                                            
CONECT   75   22                                                            
CONECT   76   24                                                            
CONECT   77   24                                                            
CONECT   78   24                                                            
CONECT   79   25                                                            
CONECT   80   33                                                            
CONECT   81   36                                                            
CONECT   82   37                                                            
CONECT   83   38                                                            
CONECT   84   39                                                            
CONECT   85   40                                                            
CONECT   86   41                                                            
CONECT   87   42                                                            
CONECT   88   43                                                            
CONECT   89   43                                                            
CONECT   90   43                                                            
CONECT   91   44                                                            
CONECT   92   45                                                            
CONECT   93   46                                                            
CONECT   94   46                                                            
MASTER        0    0    0    0    0    0    0    0   94    0  192    0
END

RDKit          3D

94 96  0  0  0  0  0  0  0  0999 V2000
    4.8567   -3.8539   -1.6941 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1603   -2.9716   -0.6871 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3052   -3.6033    0.1006 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2176   -2.8379    0.7645 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9200   -3.5889    0.7728 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2390   -4.9636    0.6946 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0691   -3.3067   -0.4065 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2022   -2.9253   -0.3609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7125   -2.4065    0.9320 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1773   -3.5956    1.7446 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8285   -1.3744    0.7613 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -5.2007   -1.9352    0.9917 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.4919   -0.7256    0.5985 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4324   -1.5450   -0.6159 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6388   -0.9544   -1.7197 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.6145   -1.3328    1.5178 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
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 43 88  1  0
 43 89  1  0
 43 90  1  0
 44 91  1  6
 45 92  1  0
 46 93  1  0
 46 94  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Naphthomycin	MeSH
Naphthomycin a	MeSH
Naphthomycin C	MeSH

Chemical Formula

C₃₉H₄₄ClNO₉

Average Mass

706.2300 Da

Monoisotopic Mass

705.27046 Da

IUPAC Name

(7Z,9S,10S,11S,12Z,14S,16Z,20S,21S,22Z,24Z,26Z)-31-chloro-4,10,14,20-tetrahydroxy-3,7,9,11,17,21-hexamethyl-29-azatricyclo[28.3.1.0^{5,33}]tetratriaconta-1(33),2,4,7,12,16,22,24,26,30-decaene-6,18,28,32,34-pentone

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@H]1\C=C/C=C\C=C/C(=O)NC2=C(Cl)C(=O)C3=C(C(O)=C(C)C=C3C2=O)C(=O)\C(C)=C/[C@H](C)[C@@H](O)[C@@H](C)\C=C/[C@@H](O)C\C=C(C)/C(=O)C[C@@H]1O

InChI Identifier

InChI=1S/C39H44ClNO9/c1-20-11-9-7-8-10-12-30(45)41-34-33(40)39(50)31-27(38(34)49)18-25(6)37(48)32(31)36(47)24(5)17-23(4)35(46)22(3)14-16-26(42)15-13-21(2)29(44)19-28(20)43/h7-14,16-18,20,22-23,26,28,35,42-43,46,48H,15,19H2,1-6H3,(H,41,45)/b8-7-,11-9-,12-10-,16-14-,21-13-,24-17-/t20-,22-,23-,26-,28-,35-/m0/s1

InChI Key

PGLCKEFYXCGUGA-DWSJIZEISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	4030505
Streptomyces sp. Y8340369	Bacteria	KNApSAcK

Species Where Detected

Species Name	Source	Reference
Streptomyces diastatochromogenes var. diastatochromogenes T.1892	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.36	ALOGPS
logP	5.22	ChemAxon
logS	-5.6	ALOGPS
pKa (Strongest Acidic)	5.45	ChemAxon
pKa (Strongest Basic)	-0.75	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	178.3 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	201.24 m³·mol⁻¹	ChemAxon
Polarizability	73.18 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA016365

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00018502

Chemspider ID

57260935

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101636766

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Mukhopadhyay T, Franco CM, Reddy GC, Ganguli BN, Fehlhaber HW: A new ansamycin antibiotic, naphthomycin H from a Streptomyces species Y-83,40369. J Antibiot (Tokyo). 1985 Jul;38(7):948-51. doi: 10.7164/antibiotics.38.948. [PubMed:4030505 ]

Showing NP-Card for Naphthomycin H (NP0021324)

MOL for NP0021324 (Naphthomycin H)

3D MOL for NP0021324 (Naphthomycin H)

3D SDF for NP0021324 (Naphthomycin H)

3D-SDF for NP0021324 (Naphthomycin H)

PDB for NP0021324 (Naphthomycin H)

3D PDB for NP0021324 (Naphthomycin H)

SMILES for NP0021324 (Naphthomycin H)

INCHI for NP0021324 (Naphthomycin H)

Structure for NP0021324 (Naphthomycin H)

3D Structure for NP0021324 (Naphthomycin H)