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Record Information
Version1.0
Created at2021-01-06 06:31:56 UTC
Updated at2021-07-15 17:35:53 UTC
NP-MRD IDNP0021263
Secondary Accession NumbersNone
Natural Product Identification
Common NameAzinomycin B
Provided ByNPAtlasNPAtlas Logo
Description Azinomycin B is found in Streptomyces sahachiroi and Streptomyces sp.. It was first documented in 1986 (PMID: 3829181). Based on a literature review very few articles have been published on 2-[(2E,3R,4R,5S)-3-(acetyloxy)-4-hydroxy-1-azabicyclo[3.1.0]Hexan-2-ylidene]-2-{[(2S)-1-hydroxy-2-[(E)-3-methoxy-5-methylnaphthalene-1-carbonyloxy]-2-[(2S)-2-methyloxiran-2-yl]ethylidene]amino}-N-[(1E)-1-hydroxy-3-oxobut-1-en-2-yl]ethanimidic acid.
Structure
Thumb
Synonyms
ValueSource
2-[(2E,3R,4R,5S)-3-(Acetyloxy)-4-hydroxy-1-azabicyclo[3.1.0]hexan-2-ylidene]-2-{[(2S)-1-hydroxy-2-[(e)-3-methoxy-5-methylnaphthalene-1-carbonyloxy]-2-[(2S)-2-methyloxiran-2-yl]ethylidene]amino}-N-[(1E)-1-hydroxy-3-oxobut-1-en-2-yl]ethanimidateGenerator
Chemical FormulaC31H33N3O11
Average Mass623.6150 Da
Monoisotopic Mass623.21151 Da
IUPAC Name(S)-({[(2E,3R,4R,5S)-3-(acetyloxy)-4-hydroxy-1-azabicyclo[3.1.0]hexan-2-ylidene]({[(1E)-1-hydroxy-3-oxobut-1-en-2-yl]carbamoyl})methyl}carbamoyl)[(2S)-2-methyloxiran-2-yl]methyl 3-methoxy-5-methylnaphthalene-1-carboxylate
Traditional Name(S)-({[(2E,3R,4R,5S)-3-(acetyloxy)-4-hydroxy-1-azabicyclo[3.1.0]hexan-2-ylidene]({[(1E)-1-hydroxy-3-oxobut-1-en-2-yl]carbamoyl})methyl}carbamoyl)[(2S)-2-methyloxiran-2-yl]methyl 3-methoxy-5-methylnaphthalene-1-carboxylate
CAS Registry NumberNot Available
SMILES
COC1=CC(C(=O)O[C@H](C(=O)N\C(C(=O)N\C(=C\O)C(C)=O)=C2/[C@@H](OC(C)=O)[C@H](O)[C@@H]3CN23)[C@]2(C)CO2)=C2C=CC=C(C)C2=C1
InChI Identifier
InChI=1S/C31H33N3O11/c1-14-7-6-8-18-19(14)9-17(42-5)10-20(18)30(41)45-27(31(4)13-43-31)29(40)33-23(28(39)32-21(12-35)15(2)36)24-26(44-16(3)37)25(38)22-11-34(22)24/h6-10,12,22,25-27,35,38H,11,13H2,1-5H3,(H,32,39)(H,33,40)/b21-12+,24-23+/t22-,25+,26+,27+,31-,34?/m0/s1
InChI KeyQIKVYJOCQXXRSJ-TWEUQPGKSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces sahachiroiBacteria
Streptomyces sp.NPAtlas
Species Where Detected
Species NameSourceReference
Streptomyces sp. WK-2057KNApSAcK Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.22ALOGPS
logP-0.088ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)8.32ChemAxon
pKa (Strongest Basic)-3.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area193.1 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity157.8 m³·mol⁻¹ChemAxon
Polarizability63.84 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA011599
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID2297386
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound3032396
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Yokoi K, Nagaoka K, Nakashima T: Azinomycins A and B, new antitumor antibiotics. II. Chemical structures. Chem Pharm Bull (Tokyo). 1986 Nov;34(11):4554-61. doi: 10.1248/cpb.34.4554. [PubMed:3829181 ]