Np mrd loader

Record Information
Version1.0
Created at2021-01-06 06:23:32 UTC
Updated at2021-07-15 17:35:27 UTC
NP-MRD IDNP0021099
Secondary Accession NumbersNone
Natural Product Identification
Common NameDemethylchromomycin A3
Provided ByNPAtlasNPAtlas Logo
Description Demethylchromomycin A3 is found in Streptomyces and Streptomyces aburaviensis PA-39856. It was first documented in 1988 (PMID: 3346192). Based on a literature review very few articles have been published on (2S,3R,4S,6R)-6-{[(6R,7R)-6-{[(2S,4S,5R,6S)-4-{[(2S,4R,5S,6R)-4-{[(2R,4R,5R,6R)-5-(acetyloxy)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-7-[(1S,3R,4R)-3,4-dihydroxy-1-methoxy-2-oxopentyl]-4,10-dihydroxy-3-methyl-5-oxo-5,6,7,8-tetrahydroanthracen-2-yl]oxy}-4-{[(2R,4S,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-2-methyloxan-3-yl acetate.
Structure
Thumb
Synonyms
ValueSource
(2S,3R,4S,6R)-6-{[(6R,7R)-6-{[(2S,4S,5R,6S)-4-{[(2S,4R,5S,6R)-4-{[(2R,4R,5R,6R)-5-(acetyloxy)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-7-[(1S,3R,4R)-3,4-dihydroxy-1-methoxy-2-oxopentyl]-4,10-dihydroxy-3-methyl-5-oxo-5,6,7,8-tetrahydroanthracen-2-yl]oxy}-4-{[(2R,4S,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-2-methyloxan-3-yl acetic acidGenerator
Chemical FormulaC56H80O26
Average Mass1169.2300 Da
Monoisotopic Mass1168.49378 Da
IUPAC Name(2S,3R,4S)-6-{[(6R,7R)-6-{[(2S,4S,5R,6S)-4-{[(2S,4R,5S,6R)-4-{[(2R,4R,5R,6R)-5-(acetyloxy)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-7-[(1S,3R,4R)-3,4-dihydroxy-1-methoxy-2-oxopentyl]-4,10-dihydroxy-3-methyl-5-oxo-5,6,7,8-tetrahydroanthracen-2-yl]oxy}-4-{[(2R,4S,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-2-methyloxan-3-yl acetate
Traditional Name(2S,3R,4S)-6-{[(6R,7R)-6-{[(2S,4S,5R,6S)-4-{[(2S,4R,5S,6R)-4-{[(2R,4R,5R,6R)-5-(acetyloxy)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-5-hydroxy-6-methyloxan-2-yl]oxy}-7-[(1S,3R,4R)-3,4-dihydroxy-1-methoxy-2-oxopentyl]-4,10-dihydroxy-3-methyl-5-oxo-7,8-dihydro-6H-anthracen-2-yl]oxy}-4-{[(2R,4S,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-2-methyloxan-3-yl acetate
CAS Registry NumberNot Available
SMILES
CO[C@@H]([C@H]1CC2=C(C(=O)[C@@H]1O[C@H]1C[C@H](O[C@H]3C[C@@H](O[C@@H]4C[C@@](C)(O)[C@H](OC(C)=O)[C@@H](C)O4)[C@@H](O)[C@@H](C)O3)[C@H](O)[C@H](C)O1)C(O)=C1C(O)=C(C)C(O[C@@H]3C[C@H](O[C@@H]4C[C@H](O)[C@@H](O)[C@H](C)O4)[C@H](OC(C)=O)[C@H](C)O3)=CC1=C2)C(=O)[C@H](O)[C@@H](C)O
InChI Identifier
InChI=1S/C56H80O26/c1-20-33(78-39-18-36(52(25(6)74-39)76-27(8)58)81-37-15-32(60)46(63)22(3)71-37)14-30-12-29-13-31(53(70-11)51(68)45(62)21(2)57)54(50(67)43(29)49(66)42(30)44(20)61)82-40-17-34(47(64)24(5)73-40)79-38-16-35(48(65)23(4)72-38)80-41-19-56(10,69)55(26(7)75-41)77-28(9)59/h12,14,21-26,31-32,34-41,45-48,52-55,57,60-66,69H,13,15-19H2,1-11H3/t21-,22+,23-,24+,25+,26-,31-,32+,34+,35-,36+,37-,38+,39-,40+,41-,45-,46+,47-,48+,52-,53+,54-,55-,56-/m1/s1
InChI KeyLKAAYCHLHTYRFV-YTCZUGOVSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces aburaviensis PA-39856Bacteria
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.21ALOGPS
logP2.96ChemAxon
logS-3.4ALOGPS
pKa (Strongest Acidic)7.84ChemAxon
pKa (Strongest Basic)-3.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count24ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area370.34 ŲChemAxon
Rotatable Bond Count19ChemAxon
Refractivity275.31 m³·mol⁻¹ChemAxon
Polarizability123.08 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA021355
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78443255
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound139589290
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Koenuma M, Uchida N, Yamaguchi K, Kawamura Y, Matsumoto K: New aureolic acid antibiotics. I. Screening, isolation, characterization and biological properties. J Antibiot (Tokyo). 1988 Jan;41(1):45-52. doi: 10.7164/antibiotics.41.45. [PubMed:3346192 ]