Np mrd loader

Record Information
Version1.0
Created at2021-01-06 06:22:21 UTC
Updated at2021-07-15 17:35:23 UTC
NP-MRD IDNP0021077
Secondary Accession NumbersNone
Natural Product Identification
Common NameStalobacin I
Provided ByNPAtlasNPAtlas Logo
Description Stalobacin I is found in Unknown sp. It was first documented in 2012 (PMID: 34383397). Based on a literature review very few articles have been published on (2S,3S)-3-{[(1S)-1-{[({1-[(2-{[(2S)-2-amino-3-carboxy-1-hydroxypropylidene]amino}-5-carbamimidamido-1,3,4-trihydroxypentylidene)amino]-1-[({[(1S)-1-carboxy-2-hydroxyethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]-2-methylbutan-2-yl}oxy)methyl][(1S,5R)-3-carbamimidoyl-2-oxo-3-azabicyclo[3.1.0]Hexan-1-yl]carbamoyl}-2-carboxyethyl](methyl)carbamoyl}-3-{[(3E)-1,2-dihydroxy-4-[(1R,2R)-2-[(6Z)-tridec-6-en-1-yl]cyclopropyl]but-3-en-1-ylidene]amino}-2-hydroxypropanoic acid (PMID: 32378891) (PMID: 34383398) (PMID: 34383396) (PMID: 34384147).
Structure
Thumb
Synonyms
ValueSource
(2S,3S)-3-{[(1S)-1-{[({1-[(2-{[(2S)-2-amino-3-carboxy-1-hydroxypropylidene]amino}-5-carbamimidamido-1,3,4-trihydroxypentylidene)amino]-1-[({[(1S)-1-carboxy-2-hydroxyethyl]-C-hydroxycarbonimidoyl}methyl)-C-hydroxycarbonimidoyl]-2-methylbutan-2-yl}oxy)methyl][(1S,5R)-3-carbamimidoyl-2-oxo-3-azabicyclo[3.1.0]hexan-1-yl]carbamoyl}-2-carboxyethyl](methyl)carbamoyl}-3-{[(3E)-1,2-dihydroxy-4-[(1R,2R)-2-[(6Z)-tridec-6-en-1-yl]cyclopropyl]but-3-en-1-ylidene]amino}-2-hydroxypropanoateGenerator
Chemical FormulaC57H92N14O22
Average Mass1325.4390 Da
Monoisotopic Mass1324.65106 Da
IUPAC Name(2S,3S)-3-{[(1S)-1-[({[(1S,2S)-1-[(2S,3S,4R)-2-[(2S)-2-amino-3-carboxypropanamido]-5-[(diaminomethylidene)amino]-3,4-dihydroxypentanamido]-1-[({[(1S)-1-carboxy-2-hydroxyethyl]carbamoyl}methyl)carbamoyl]-2-methylbutan-2-yl]oxy}methyl)[(1S,5R)-3-carbamimidoyl-2-oxo-3-azabicyclo[3.1.0]hexan-1-yl]carbamoyl]-2-carboxyethyl](methyl)carbamoyl}-2-hydroxy-3-[(2S,3E)-2-hydroxy-4-[(1R,2R)-2-[(6Z)-tridec-6-en-1-yl]cyclopropyl]but-3-enamido]propanoic acid
Traditional Name(2S,3S)-3-{[(1S)-1-[({[(1S,2S)-1-[(2S,3S,4R)-2-[(2S)-2-amino-3-carboxypropanamido]-5-[(diaminomethylidene)amino]-3,4-dihydroxypentanamido]-1-[({[(1S)-1-carboxy-2-hydroxyethyl]carbamoyl}methyl)carbamoyl]-2-methylbutan-2-yl]oxy}methyl)[(1S,5R)-3-carbamimidoyl-2-oxo-3-azabicyclo[3.1.0]hexan-1-yl]carbamoyl]-2-carboxyethyl](methyl)carbamoyl}-2-hydroxy-3-[(2S,3E)-2-hydroxy-4-[(1R,2R)-2-[(6Z)-tridec-6-en-1-yl]cyclopropyl]but-3-enamido]propanoic acid
CAS Registry NumberNot Available
SMILES
CCCCCC\C=C/CCCCC[C@@H]1C[C@H]1\C=C\C(O)C(=O)N[C@@H]([C@H](O)C(O)=O)C(=O)N(C)[C@@H](CC(O)=O)C(=O)N(COC(C)(CC)C(NC(=O)C(NC(=O)[C@@H](N)CC(O)=O)C(O)C(O)CN=C(N)N)C(=O)NCC(=O)N[C@@H](CO)C(O)=O)[C@@]12C[C@@H]1CN(C(N)=N)C2=O
InChI Identifier
InChI=1S/C57H92N14O22/c1-5-7-8-9-10-11-12-13-14-15-16-17-29-20-30(29)18-19-35(73)46(83)67-41(43(81)52(90)91)50(87)69(4)34(22-39(78)79)49(86)71(57-23-31(57)26-70(53(57)92)55(61)62)28-93-56(3,6-2)44(48(85)63-25-37(75)65-33(27-72)51(88)89)68-47(84)40(42(80)36(74)24-64-54(59)60)66-45(82)32(58)21-38(76)77/h11-12,18-19,29-36,40-44,72-74,80-81H,5-10,13-17,20-28,58H2,1-4H3,(H3,61,62)(H,63,85)(H,65,75)(H,66,82)(H,67,83)(H,68,84)(H,76,77)(H,78,79)(H,88,89)(H,90,91)(H4,59,60,64)/b12-11-,19-18+/t29-,30-,31-,32+,33+,34+,35?,36?,40?,41+,42?,43+,44?,56?,57+/m1/s1
InChI KeySCMCYOOSRHMIRF-HNYUTTIDSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Unknown sp.NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.43ALOGPS
logP-12ChemAxon
logS-4.9ALOGPS
pKa (Strongest Acidic)2.43ChemAxon
pKa (Strongest Basic)10.21ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count28ChemAxon
Hydrogen Donor Count19ChemAxon
Polar Surface Area606.3 ŲChemAxon
Rotatable Bond Count44ChemAxon
Refractivity331.64 m³·mol⁻¹ChemAxon
Polarizability135.58 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA028552
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146684644
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Matsui K, Kan Y, Kikuchi J, Matsushima K, Takemura M, Maki H, Kozono I, Ueda T, Minagawa K: Stalobacin: Discovery of Novel Lipopeptide Antibiotics with Potent Antibacterial Activity against Multidrug-Resistant Bacteria. J Med Chem. 2020 Jun 11;63(11):6090-6095. doi: 10.1021/acs.jmedchem.0c00295. Epub 2020 May 19. [PubMed:32378891 ]
  2. Mitchell PM: The cost-effectiveness of what in health and care?. 2021 Feb. [PubMed:34383398 ]
  3. Authors unspecified: Ozanimod. 2012. [PubMed:34383397 ]
  4. Authors unspecified: Ponesimod. 2012. [PubMed:34383396 ]
  5. Lee J, Cho Y, Choi KH, Hwang I, Oh YL: Metastatic leiomyosarcoma of the thyroid gland: cytologic findings and differential diagnosis. J Pathol Transl Med. 2021 Aug 13. pii: jptm.2021.06.23. doi: 10.4132/jptm.2021.06.23. [PubMed:34384147 ]