Np mrd loader

Record Information
Version2.0
Created at2021-01-06 06:21:15 UTC
Updated at2021-07-15 17:35:19 UTC
NP-MRD IDNP0021053
Secondary Accession NumbersNone
Natural Product Identification
Common NameLandornamide A
Provided ByNPAtlasNPAtlas Logo
Description Landornamide A is found in Kamptonema sp. PCC 6506. Landornamide A was first documented in 2020 (PMID: 32163654). Based on a literature review very few articles have been published on Landornamide A.
Structure
Thumb
Synonyms
ValueSource
(2S,3R)-2-{[(2S)-5-amino-2-({[(6R,9S,15R)-15-[(2-{[(2S)-5-amino-2-({[(9S,12R,15S,18R)-18-[(2-amino-1-hydroxyethylidene)amino]-12-[(2S)-butan-2-yl]-5,8,11,14,17-pentahydroxy-15-[(1H-indol-3-yl)methyl]-9-methyl-1-thia-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-3-yl](hydroxy)methylidene}amino)-1-hydroxypentylidene]amino}-1-hydroxyethylidene)amino]-9-benzyl-5,8,11,14-tetrahydroxy-2-methyl-6-(propan-2-yl)-1-thia-4,7,10,13-tetraazacyclohexadeca-4,7,10,13-tetraen-3-yl](hydroxy)methylidene}amino)-1-hydroxypentylidene]amino}-3-hydroxybutanoateGenerator
Chemical FormulaC69H103N19O18S2
Average Mass1550.8200 Da
Monoisotopic Mass1549.71699 Da
IUPAC Name(2S,3R)-2-[(2S)-5-amino-2-{[(2S,3R,6R,9S,15R)-15-{2-[(2S)-5-amino-2-{[(3R,9S,12R,18R)-18-(2-aminoacetamido)-12-[(2S)-butan-2-yl]-15-[(1H-indol-3-yl)methyl]-9-methyl-5,8,11,14,17-pentaoxo-1-thia-4,7,10,13,16-pentaazacyclononadecan-3-yl]formamido}pentanamido]acetamido}-9-benzyl-2-methyl-5,8,11,14-tetraoxo-6-(propan-2-yl)-1-thia-4,7,10,13-tetraazacyclohexadecan-3-yl]formamido}pentanamido]-3-hydroxybutanoic acid
Traditional Name(2S,3R)-2-[(2S)-5-amino-2-{[(2S,3R,6R,9S,15R)-15-{2-[(2S)-5-amino-2-{[(3R,9S,12R,18R)-18-(2-aminoacetamido)-12-[(2S)-butan-2-yl]-15-(1H-indol-3-ylmethyl)-9-methyl-5,8,11,14,17-pentaoxo-1-thia-4,7,10,13,16-pentaazacyclononadecan-3-yl]formamido}pentanamido]acetamido}-9-benzyl-6-isopropyl-2-methyl-5,8,11,14-tetraoxo-1-thia-4,7,10,13-tetraazacyclohexadecan-3-yl]formamido}pentanamido]-3-hydroxybutanoic acid
CAS Registry NumberNot Available
SMILES
CC[C@H](C)[C@H]1NC(=O)[C@H](CC2=CNC3=C2C=CC=C3)NC(=O)[C@H](CSCC(NC(=O)CNC(=O)[C@H](C)NC1=O)C(=O)N[C@@H](CCCN)C(=O)NCC(=O)N[C@H]1CSC(C)C(NC(=O)[C@H](NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)CNC1=O)C(C)C)C(=O)N[C@@H](CCCN)C(=O)N[C@@H]([C@@H](C)O)C(O)=O)NC(=O)CN
InChI Identifier
InChI=1S/C69H103N19O18S2/c1-8-35(4)55-67(103)77-36(5)58(94)74-28-52(92)80-48(32-107-31-47(79-50(90)26-72)65(101)84-46(63(99)86-55)25-40-27-73-42-19-13-12-18-41(40)42)64(100)82-43(20-14-22-70)59(95)75-30-53(93)81-49-33-108-38(7)57(68(104)83-44(21-15-23-71)61(97)87-56(37(6)89)69(105)106)88-66(102)54(34(2)3)85-62(98)45(24-39-16-10-9-11-17-39)78-51(91)29-76-60(49)96/h9-13,16-19,27,34-38,43-49,54-57,73,89H,8,14-15,20-26,28-33,70-72H2,1-7H3,(H,74,94)(H,75,95)(H,76,96)(H,77,103)(H,78,91)(H,79,90)(H,80,92)(H,81,93)(H,82,100)(H,83,104)(H,84,101)(H,85,98)(H,86,99)(H,87,97)(H,88,102)(H,105,106)/t35-,36-,37+,38?,43-,44-,45-,46-,47-,48?,49-,54+,55+,56-,57?/m0/s1
InChI KeyULTOBTMZTQDCLE-DYFGBKDTSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Kamptonema sp. PCC 6506NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.3ALOGPS
logP-10ChemAxon
logS-4.5ALOGPS
pKa (Strongest Acidic)3.31ChemAxon
pKa (Strongest Basic)9.84ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count21ChemAxon
Hydrogen Donor Count21ChemAxon
Polar Surface Area587.88 ŲChemAxon
Rotatable Bond Count27ChemAxon
Refractivity392.4 m³·mol⁻¹ChemAxon
Polarizability160.61 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA028538
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146684639
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Bosch NM, Borsa M, Greczmiel U, Morinaka BI, Gugger M, Oxenius A, Vagstad AL, Piel J: Landornamides: Antiviral Ornithine-Containing Ribosomal Peptides Discovered through Genome Mining. Angew Chem Int Ed Engl. 2020 Jul 13;59(29):11763-11768. doi: 10.1002/anie.201916321. Epub 2020 May 18. [PubMed:32163654 ]