NP-MRD: Showing NP-Card for Phototemtide D (NP0020909)

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Record Information

Version

2.0

Created at

2021-01-06 06:14:48 UTC

Updated at

2021-07-15 17:34:55 UTC

NP-MRD ID

NP0020909

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Phototemtide D

Provided By

NPAtlas

Description

Phototemtide D is found in Photorhabdus and Photorhabdus temperata. Based on a literature review very few articles have been published on Phototemtide D.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042107543D          

103104  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652307042107543D          

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M  END
> <DATABASE_ID>
NP0020909

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]([H])(C([H])([H])[H])[C@]1([H])N([H])C(=O)[C@]([H])(N([H])C(=O)[C@@]([H])(N([H])C(=O)C([H])([H])N([H])C(=O)C([H])([H])[C@]([H])(OC(=O)[C@@]([H])(N([H])C1=O)[C@@]([H])(C([H])([H])[H])C([H])([H])C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H])C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H]

> <INCHI_IDENTIFIER>
InChI=1S/C35H55N5O8/c1-7-9-10-14-17-25-19-27(42)36-20-28(43)38-29(21(3)4)33(45)37-26(18-24-15-12-11-13-16-24)32(44)40-31(23(6)41)34(46)39-30(22(5)8-2)35(47)48-25/h11-13,15-16,21-23,25-26,29-31,41H,7-10,14,17-20H2,1-6H3,(H,36,42)(H,37,45)(H,38,43)(H,39,46)(H,40,44)/t22-,23+,25+,26+,29-,30-,31-/m0/s1

> <INCHI_KEY>
SGNUCAXHUKLAMR-ICYUVRCSSA-N

> <FORMULA>
C35H55N5O8

> <MOLECULAR_WEIGHT>
673.852

> <EXACT_MASS>
673.405063751

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
103

> <JCHEM_AVERAGE_POLARIZABILITY>
74.11114271694228

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,6S,9R,12S,19R)-9-benzyl-3-[(2S)-butan-2-yl]-19-hexyl-6-[(1R)-1-hydroxyethyl]-12-(propan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadecane-2,5,8,11,14,17-hexone

> <ALOGPS_LOGP>
2.89

> <JCHEM_LOGP>
2.5724534846666662

> <ALOGPS_LOGS>
-4.43

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.055372575197204

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.578455150213172

> <JCHEM_PKA_STRONGEST_BASIC>
-2.3647505054113482

> <JCHEM_POLAR_SURFACE_AREA>
192.02999999999997

> <JCHEM_REFRACTIVITY>
178.06670000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.50e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6S,9R,12S,19R)-9-benzyl-3-[(2S)-butan-2-yl]-19-hexyl-6-[(1R)-1-hydroxyethyl]-12-isopropyl-1-oxa-4,7,10,13,16-pentaazacyclononadecane-2,5,8,11,14,17-hexone

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

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M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0      -8.778   1.381   0.083  0.00  0.00           C+0
HETATM    2  C   UNK     0      -8.323   1.305   1.535  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.365   0.160   1.757  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.114   0.287   0.898  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.367   1.552   1.206  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.137   1.785   0.403  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.059   0.734   0.535  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.908   1.209  -0.368  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.229   2.332   0.334  0.00  0.00           C+0
HETATM   10  O   UNK     0      -1.250   2.327   1.605  0.00  0.00           O+0
HETATM   11  N   UNK     0      -0.573   3.384  -0.316  0.00  0.00           N+0
HETATM   12  C   UNK     0       0.381   3.249  -1.401  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.306   4.407  -1.381  0.00  0.00           C+0
HETATM   14  O   UNK     0       0.745   5.550  -1.258  0.00  0.00           O+0
HETATM   15  N   UNK     0       2.712   4.336  -1.485  0.00  0.00           N+0
HETATM   16  C   UNK     0       3.495   3.308  -0.778  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.724   4.085  -0.278  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.491   4.676  -1.415  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.297   5.210   0.637  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.771   2.753   0.390  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.186   3.664   1.092  0.00  0.00           O+0
HETATM   22  N   UNK     0       2.667   1.411   0.783  0.00  0.00           N+0
HETATM   23  C   UNK     0       3.719   0.465   1.028  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.693   0.256  -0.068  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.760  -0.721   0.266  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.743  -2.053  -0.018  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.786  -2.878   0.344  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.898  -2.358   1.017  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.939  -1.021   1.314  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.886  -0.215   0.943  0.00  0.00           C+0
HETATM   31  C   UNK     0       3.189  -0.842   1.478  0.00  0.00           C+0
HETATM   32  O   UNK     0       4.073  -1.577   2.076  0.00  0.00           O+0
HETATM   33  N   UNK     0       1.921  -1.394   1.365  0.00  0.00           N+0
HETATM   34  C   UNK     0       1.100  -1.714   0.217  0.00  0.00           C+0
HETATM   35  C   UNK     0       1.837  -2.525  -0.831  0.00  0.00           C+0
HETATM   36  C   UNK     0       2.377  -3.817  -0.254  0.00  0.00           C+0
HETATM   37  O   UNK     0       1.049  -2.816  -1.933  0.00  0.00           O+0
HETATM   38  C   UNK     0      -0.118  -2.486   0.643  0.00  0.00           C+0
HETATM   39  O   UNK     0       0.172  -3.477   1.414  0.00  0.00           O+0
HETATM   40  N   UNK     0      -1.452  -2.265   0.319  0.00  0.00           N+0
HETATM   41  C   UNK     0      -2.124  -2.249  -0.952  0.00  0.00           C+0
HETATM   42  C   UNK     0      -2.670  -3.636  -1.329  0.00  0.00           C+0
HETATM   43  C   UNK     0      -1.637  -4.690  -1.444  0.00  0.00           C+0
HETATM   44  C   UNK     0      -3.706  -4.080  -0.314  0.00  0.00           C+0
HETATM   45  C   UNK     0      -4.265  -5.443  -0.656  0.00  0.00           C+0
HETATM   46  C   UNK     0      -3.308  -1.306  -0.925  0.00  0.00           C+0
HETATM   47  O   UNK     0      -4.061  -1.378  -1.929  0.00  0.00           O+0
HETATM   48  O   UNK     0      -3.510  -0.483   0.095  0.00  0.00           O+0
HETATM   49  H   UNK     0      -8.128   2.116  -0.421  0.00  0.00           H+0
HETATM   50  H   UNK     0      -9.830   1.674   0.043  0.00  0.00           H+0
HETATM   51  H   UNK     0      -8.688   0.369  -0.343  0.00  0.00           H+0
HETATM   52  H   UNK     0      -9.237   1.074   2.141  0.00  0.00           H+0
HETATM   53  H   UNK     0      -7.921   2.265   1.893  0.00  0.00           H+0
HETATM   54  H   UNK     0      -7.094   0.169   2.829  0.00  0.00           H+0
HETATM   55  H   UNK     0      -7.894  -0.788   1.537  0.00  0.00           H+0
HETATM   56  H   UNK     0      -5.511  -0.630   1.116  0.00  0.00           H+0
HETATM   57  H   UNK     0      -6.420   0.220  -0.161  0.00  0.00           H+0
HETATM   58  H   UNK     0      -6.101   2.390   1.012  0.00  0.00           H+0
HETATM   59  H   UNK     0      -5.153   1.615   2.298  0.00  0.00           H+0
HETATM   60  H   UNK     0      -4.456   1.899  -0.670  0.00  0.00           H+0
HETATM   61  H   UNK     0      -3.720   2.809   0.645  0.00  0.00           H+0
HETATM   62  H   UNK     0      -2.712   0.684   1.591  0.00  0.00           H+0
HETATM   63  H   UNK     0      -2.385   1.532  -1.327  0.00  0.00           H+0
HETATM   64  H   UNK     0      -1.192   0.401  -0.499  0.00  0.00           H+0
HETATM   65  H   UNK     0      -0.781   4.378   0.003  0.00  0.00           H+0
HETATM   66  H   UNK     0       0.898   2.282  -1.429  0.00  0.00           H+0
HETATM   67  H   UNK     0      -0.231   3.346  -2.345  0.00  0.00           H+0
HETATM   68  H   UNK     0       3.203   5.046  -2.087  0.00  0.00           H+0
HETATM   69  H   UNK     0       3.738   2.584  -1.553  0.00  0.00           H+0
HETATM   70  H   UNK     0       5.391   3.426   0.303  0.00  0.00           H+0
HETATM   71  H   UNK     0       5.534   4.025  -2.310  0.00  0.00           H+0
HETATM   72  H   UNK     0       5.176   5.706  -1.695  0.00  0.00           H+0
HETATM   73  H   UNK     0       6.555   4.801  -1.053  0.00  0.00           H+0
HETATM   74  H   UNK     0       4.402   4.891   1.695  0.00  0.00           H+0
HETATM   75  H   UNK     0       3.299   5.593   0.401  0.00  0.00           H+0
HETATM   76  H   UNK     0       5.011   6.048   0.514  0.00  0.00           H+0
HETATM   77  H   UNK     0       1.688   1.060   0.924  0.00  0.00           H+0
HETATM   78  H   UNK     0       4.374   0.838   1.905  0.00  0.00           H+0
HETATM   79  H   UNK     0       4.197  -0.123  -1.007  0.00  0.00           H+0
HETATM   80  H   UNK     0       5.226   1.167  -0.396  0.00  0.00           H+0
HETATM   81  H   UNK     0       4.906  -2.468  -0.533  0.00  0.00           H+0
HETATM   82  H   UNK     0       6.736  -3.927   0.102  0.00  0.00           H+0
HETATM   83  H   UNK     0       8.735  -2.990   1.314  0.00  0.00           H+0
HETATM   84  H   UNK     0       8.807  -0.623   1.837  0.00  0.00           H+0
HETATM   85  H   UNK     0       6.922   0.825   1.175  0.00  0.00           H+0
HETATM   86  H   UNK     0       1.430  -1.647   2.301  0.00  0.00           H+0
HETATM   87  H   UNK     0       0.848  -0.764  -0.284  0.00  0.00           H+0
HETATM   88  H   UNK     0       2.696  -1.956  -1.214  0.00  0.00           H+0
HETATM   89  H   UNK     0       1.603  -4.607  -0.196  0.00  0.00           H+0
HETATM   90  H   UNK     0       2.878  -3.659   0.701  0.00  0.00           H+0
HETATM   91  H   UNK     0       3.154  -4.183  -0.965  0.00  0.00           H+0
HETATM   92  H   UNK     0       1.287  -3.688  -2.348  0.00  0.00           H+0
HETATM   93  H   UNK     0      -2.114  -2.079   1.144  0.00  0.00           H+0
HETATM   94  H   UNK     0      -1.522  -1.911  -1.800  0.00  0.00           H+0
HETATM   95  H   UNK     0      -3.190  -3.558  -2.305  0.00  0.00           H+0
HETATM   96  H   UNK     0      -0.948  -4.601  -2.313  0.00  0.00           H+0
HETATM   97  H   UNK     0      -1.043  -4.901  -0.552  0.00  0.00           H+0
HETATM   98  H   UNK     0      -2.194  -5.650  -1.651  0.00  0.00           H+0
HETATM   99  H   UNK     0      -4.568  -3.381  -0.278  0.00  0.00           H+0
HETATM  100  H   UNK     0      -3.260  -4.165   0.708  0.00  0.00           H+0
HETATM  101  H   UNK     0      -5.229  -5.543  -0.116  0.00  0.00           H+0
HETATM  102  H   UNK     0      -4.522  -5.524  -1.735  0.00  0.00           H+0
HETATM  103  H   UNK     0      -3.611  -6.270  -0.309  0.00  0.00           H+0
CONECT    1    2   49   50   51                                             
CONECT    2    1    3   52   53                                             
CONECT    3    2    4   54   55                                             
CONECT    4    3    5   56   57                                             
CONECT    5    4    6   58   59                                             
CONECT    6    5    7   60   61                                             
CONECT    7    6    8   48   62                                             
CONECT    8    7    9   63   64                                             
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   65                                                  
CONECT   12   11   13   66   67                                             
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   68                                                  
CONECT   16   15   17   20   69                                             
CONECT   17   16   18   19   70                                             
CONECT   18   17   71   72   73                                             
CONECT   19   17   74   75   76                                             
CONECT   20   16   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   77                                                  
CONECT   23   22   24   31   78                                             
CONECT   24   23   25   79   80                                             
CONECT   25   24   26   30                                                  
CONECT   26   25   27   81                                                  
CONECT   27   26   28   82                                                  
CONECT   28   27   29   83                                                  
CONECT   29   28   30   84                                                  
CONECT   30   29   25   85                                                  
CONECT   31   23   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34   86                                                  
CONECT   34   33   35   38   87                                             
CONECT   35   34   36   37   88                                             
CONECT   36   35   89   90   91                                             
CONECT   37   35   92                                                       
CONECT   38   34   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41   93                                                  
CONECT   41   40   42   46   94                                             
CONECT   42   41   43   44   95                                             
CONECT   43   42   96   97   98                                             
CONECT   44   42   45   99  100                                             
CONECT   45   44  101  102  103                                             
CONECT   46   41   47   48                                                  
CONECT   47   46                                                            
CONECT   48   46    7                                                       
CONECT   49    1                                                            
CONECT   50    1                                                            
CONECT   51    1                                                            
CONECT   52    2                                                            
CONECT   53    2                                                            
CONECT   54    3                                                            
CONECT   55    3                                                            
CONECT   56    4                                                            
CONECT   57    4                                                            
CONECT   58    5                                                            
CONECT   59    5                                                            
CONECT   60    6                                                            
CONECT   61    6                                                            
CONECT   62    7                                                            
CONECT   63    8                                                            
CONECT   64    8                                                            
CONECT   65   11                                                            
CONECT   66   12                                                            
CONECT   67   12                                                            
CONECT   68   15                                                            
CONECT   69   16                                                            
CONECT   70   17                                                            
CONECT   71   18                                                            
CONECT   72   18                                                            
CONECT   73   18                                                            
CONECT   74   19                                                            
CONECT   75   19                                                            
CONECT   76   19                                                            
CONECT   77   22                                                            
CONECT   78   23                                                            
CONECT   79   24                                                            
CONECT   80   24                                                            
CONECT   81   26                                                            
CONECT   82   27                                                            
CONECT   83   28                                                            
CONECT   84   29                                                            
CONECT   85   30                                                            
CONECT   86   33                                                            
CONECT   87   34                                                            
CONECT   88   35                                                            
CONECT   89   36                                                            
CONECT   90   36                                                            
CONECT   91   36                                                            
CONECT   92   37                                                            
CONECT   93   40                                                            
CONECT   94   41                                                            
CONECT   95   42                                                            
CONECT   96   43                                                            
CONECT   97   43                                                            
CONECT   98   43                                                            
CONECT   99   44                                                            
CONECT  100   44                                                            
CONECT  101   45                                                            
CONECT  102   45                                                            
CONECT  103   45                                                            
MASTER        0    0    0    0    0    0    0    0  103    0  208    0
END

RDKit          3D

103104  0  0  0  0  0  0  0  0999 V2000
   -8.7777    1.3807    0.0829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3226    1.3052    1.5346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3651    0.1595    1.7568 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1143    0.2872    0.8976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3674    1.5523    1.2064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1366    1.7849    0.4025 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0595    0.7341    0.5352 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9080    1.2087   -0.3683 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2287    2.3315    0.3337 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2500    2.3267    1.6051 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5728    3.3844   -0.3163 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3806    3.2489   -1.4013 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3060    4.4070   -1.3809 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7451    5.5500   -1.2577 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7123    4.3363   -1.4846 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4950    3.3078   -0.7782 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7236    4.0850   -0.2780 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4912    4.6764   -1.4145 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2970    5.2097    0.6365 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7714    2.7531    0.3896 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1864    3.6640    1.0919 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6668    1.4111    0.7826 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.7186    0.4645    1.0285 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6928    0.2563   -0.0679 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7602   -0.7208    0.2661 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7427   -2.0533   -0.0177 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7862   -2.8776    0.3437 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8983   -2.3583    1.0172 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9393   -1.0210    1.3136 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8857   -0.2152    0.9432 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1886   -0.8423    1.4779 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0727   -1.5765    2.0761 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9212   -1.3939    1.3654 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0997   -1.7143    0.2174 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8374   -2.5245   -0.8309 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3768   -3.8166   -0.2535 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0492   -2.8163   -1.9332 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1179   -2.4859    0.6428 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1721   -3.4767    1.4141 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4517   -2.2648    0.3192 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1243   -2.2492   -0.9515 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6702   -3.6360   -1.3292 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6365   -4.6900   -1.4436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7062   -4.0797   -0.3141 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2646   -5.4426   -0.6559 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3083   -1.3064   -0.9250 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0609   -1.3781   -1.9293 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5098   -0.4825    0.0949 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1281    2.1162   -0.4213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8298    1.6743    0.0434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6875    0.3689   -0.3428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2367    1.0736    2.1412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9210    2.2652    1.8934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0940    0.1690    2.8293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8944   -0.7881    1.5370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5110   -0.6300    1.1156 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4205    0.2201   -0.1612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1005    2.3903    1.0120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1529    1.6147    2.2983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4564    1.8986   -0.6697 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₅H₅₅N₅O₈

Average Mass

673.8520 Da

Monoisotopic Mass

673.40506 Da

IUPAC Name

(3S,6S,9R,12S,19R)-9-benzyl-3-[(2S)-butan-2-yl]-19-hexyl-6-[(1R)-1-hydroxyethyl]-12-(propan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadecane-2,5,8,11,14,17-hexone

Traditional Name

(3S,6S,9R,12S,19R)-9-benzyl-3-[(2S)-butan-2-yl]-19-hexyl-6-[(1R)-1-hydroxyethyl]-12-isopropyl-1-oxa-4,7,10,13,16-pentaazacyclononadecane-2,5,8,11,14,17-hexone

CAS Registry Number

Not Available

SMILES

CCCCCC[C@@H]1CC(=O)NCC(=O)N[C@@H](C(C)C)C(=O)N[C@H](CC2=CC=CC=C2)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H]([C@@H](C)CC)C(=O)O1

InChI Identifier

InChI=1S/C35H55N5O8/c1-7-9-10-14-17-25-19-27(42)36-20-28(43)38-29(21(3)4)33(45)37-26(18-24-15-12-11-13-16-24)32(44)40-31(23(6)41)34(46)39-30(22(5)8-2)35(47)48-25/h11-13,15-16,21-23,25-26,29-31,41H,7-10,14,17-20H2,1-6H3,(H,36,42)(H,37,45)(H,38,43)(H,39,46)(H,40,44)/t22-,23+,25+,26+,29-,30-,31-/m0/s1

InChI Key

SGNUCAXHUKLAMR-ICYUVRCSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Photorhabdus	NPAtlas	31814269
Photorhabdus temperata	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.89	ALOGPS
logP	2.57	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	11.58	ChemAxon
pKa (Strongest Basic)	-2.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	192.03 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	178.07 m³·mol⁻¹	ChemAxon
Polarizability	74.11 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA025831

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146682307

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Phototemtide D (NP0020909)

MOL for NP0020909 (Phototemtide D)

3D MOL for NP0020909 (Phototemtide D)

3D SDF for NP0020909 (Phototemtide D)

3D-SDF for NP0020909 (Phototemtide D)

PDB for NP0020909 (Phototemtide D)

3D PDB for NP0020909 (Phototemtide D)

SMILES for NP0020909 (Phototemtide D)

INCHI for NP0020909 (Phototemtide D)

Structure for NP0020909 (Phototemtide D)

3D Structure for NP0020909 (Phototemtide D)