NP-MRD: Showing NP-Card for Phyllostine acetate (NP0020793)

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Record Information

Version

2.0

Created at

2021-01-06 06:09:20 UTC

Updated at

2021-07-15 17:34:37 UTC

NP-MRD ID

NP0020793

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Phyllostine acetate

Provided By

NPAtlas

Description

Phyllostine acetate is found in Diaporthe miriciae. Phyllostine acetate was first documented in 2020 (PMID: 31696600). Based on a literature review very few articles have been published on Phyllostine acetate.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242120383D          

 22 23  0  0  0  0            999 V2000
   -4.1607    0.5088   -0.4543 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0125    0.1126    0.4281 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2304   -0.2372    1.6162 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7071    0.1176   -0.0217 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6790   -0.2689    0.8694 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6529   -0.2225    0.2786 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3714   -1.3277    0.2173 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7128   -1.3745   -0.3564 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1848   -2.5126   -0.6696 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4617   -0.1230   -0.5500 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1750    0.5255   -1.7748 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7040    1.0886   -0.5896 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2624    0.9887   -0.2626 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4988    1.9767   -0.4483 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4404   -0.2982   -1.1534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0249    0.7193    0.1865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9250    1.4708   -0.9842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7005    0.5069    1.6912 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8659   -1.2648    1.3059 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9658   -2.2731    0.6093 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5238   -0.1601   -0.2259 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2329    2.0472   -0.3157 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13  6  1  0  0  0  0
 12 10  1  0  0  0  0
  1 15  1  0  0  0  0
  1 16  1  0  0  0  0
  1 17  1  0  0  0  0
  5 18  1  0  0  0  0
  5 19  1  0  0  0  0
  7 20  1  0  0  0  0
 10 21  1  1  0  0  0
 12 22  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0020793

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C1=C(C(=O)[C@]2([H])O[C@]2([H])C1=O)C([H])([H])OC(=O)C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C9H8O5/c1-4(10)13-3-5-2-6(11)8-9(14-8)7(5)12/h2,8-9H,3H2,1H3/t8-,9+/m1/s1

> <INCHI_KEY>
OFIASLDXZOETAM-BDAKNGLRSA-N

> <FORMULA>
C9H8O5

> <MOLECULAR_WEIGHT>
196.158

> <EXACT_MASS>
196.037173358

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
22

> <JCHEM_AVERAGE_POLARIZABILITY>
17.64106828894183

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(1R,6S)-2,5-dioxo-7-oxabicyclo[4.1.0]hept-3-en-3-yl]methyl acetate

> <ALOGPS_LOGP>
0.17

> <JCHEM_LOGP>
-0.04616343066666613

> <ALOGPS_LOGS>
-0.70

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.764302339384507

> <JCHEM_PKA_STRONGEST_BASIC>
-4.31887829466307

> <JCHEM_POLAR_SURFACE_AREA>
72.97

> <JCHEM_REFRACTIVITY>
44.40840000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.87e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(1R,6S)-2,5-dioxo-7-oxabicyclo[4.1.0]hept-3-en-3-yl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -4.161   0.509  -0.454  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.013   0.113   0.428  0.00  0.00           C+0
HETATM    3  O   UNK     0      -3.230  -0.237   1.616  0.00  0.00           O+0
HETATM    4  O   UNK     0      -1.707   0.118  -0.022  0.00  0.00           O+0
HETATM    5  C   UNK     0      -0.679  -0.269   0.869  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.653  -0.223   0.279  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.371  -1.328   0.217  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.713  -1.375  -0.356  0.00  0.00           C+0
HETATM    9  O   UNK     0       3.185  -2.513  -0.670  0.00  0.00           O+0
HETATM   10  C   UNK     0       3.462  -0.123  -0.550  0.00  0.00           C+0
HETATM   11  O   UNK     0       3.175   0.526  -1.775  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.704   1.089  -0.590  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.262   0.989  -0.263  0.00  0.00           C+0
HETATM   14  O   UNK     0       0.499   1.977  -0.448  0.00  0.00           O+0
HETATM   15  H   UNK     0      -4.440  -0.298  -1.153  0.00  0.00           H+0
HETATM   16  H   UNK     0      -5.025   0.719   0.187  0.00  0.00           H+0
HETATM   17  H   UNK     0      -3.925   1.471  -0.984  0.00  0.00           H+0
HETATM   18  H   UNK     0      -0.701   0.507   1.691  0.00  0.00           H+0
HETATM   19  H   UNK     0      -0.866  -1.265   1.306  0.00  0.00           H+0
HETATM   20  H   UNK     0       0.966  -2.273   0.609  0.00  0.00           H+0
HETATM   21  H   UNK     0       4.524  -0.160  -0.226  0.00  0.00           H+0
HETATM   22  H   UNK     0       3.233   2.047  -0.316  0.00  0.00           H+0
CONECT    1    2   15   16   17                                             
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   18   19                                             
CONECT    6    5    7   13                                                  
CONECT    7    6    8   20                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12   21                                             
CONECT   11   10   12                                                       
CONECT   12   11   13   10   22                                             
CONECT   13   12   14    6                                                  
CONECT   14   13                                                            
CONECT   15    1                                                            
CONECT   16    1                                                            
CONECT   17    1                                                            
CONECT   18    5                                                            
CONECT   19    5                                                            
CONECT   20    7                                                            
CONECT   21   10                                                            
CONECT   22   12                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   46    0
END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Phyllostine acetic acid	Generator
[(1R,6S)-2,5-Dioxo-7-oxabicyclo[4.1.0]hept-3-en-3-yl]methyl acetic acid	Generator

Chemical Formula

C₉H₈O₅

Average Mass

196.1580 Da

Monoisotopic Mass

196.03717 Da

IUPAC Name

[(1R,6S)-2,5-dioxo-7-oxabicyclo[4.1.0]hept-3-en-3-yl]methyl acetate

Traditional Name

[(1R,6S)-2,5-dioxo-7-oxabicyclo[4.1.0]hept-3-en-3-yl]methyl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)OCC1=CC(=O)[C@H]2O[C@H]2C1=O

InChI Identifier

InChI=1S/C9H8O5/c1-4(10)13-3-5-2-6(11)8-9(14-8)7(5)12/h2,8-9H,3H2,1H3/t8-,9+/m1/s1

InChI Key

OFIASLDXZOETAM-BDAKNGLRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Diaporthe miriciae	NPAtlas	31696600

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.17	ALOGPS
logP	-0.046	ChemAxon
logS	-0.7	ALOGPS
pKa (Strongest Acidic)	16.76	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	72.97 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	44.41 m³·mol⁻¹	ChemAxon
Polarizability	17.64 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA028541

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

57429835

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

91990329

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Ratnaweera PB, M Jayasundara JMN, Herath HHMSD, Williams DE, Rajapaksha SU, Nishantha KMDWP, de Silva ED, Andersen RJ: Antifeedant, contact toxicity and oviposition deterrent effects of phyllostine acetate and phyllostine isolated from the endophytic fungus Diaporthe miriciae against Plutella xylostella larvae. Pest Manag Sci. 2020 Apr;76(4):1541-1548. doi: 10.1002/ps.5673. Epub 2019 Dec 2. [PubMed:31696600 ]

Showing NP-Card for Phyllostine acetate (NP0020793)

MOL for NP0020793 (Phyllostine acetate)

3D MOL for NP0020793 (Phyllostine acetate)

3D SDF for NP0020793 (Phyllostine acetate)

3D-SDF for NP0020793 (Phyllostine acetate)

PDB for NP0020793 (Phyllostine acetate)

3D PDB for NP0020793 (Phyllostine acetate)

SMILES for NP0020793 (Phyllostine acetate)

INCHI for NP0020793 (Phyllostine acetate)

Structure for NP0020793 (Phyllostine acetate)

3D Structure for NP0020793 (Phyllostine acetate)