Np mrd loader

Record Information
Version1.0
Created at2021-01-06 06:07:20 UTC
Updated at2021-07-15 17:34:29 UTC
NP-MRD IDNP0020748
Secondary Accession NumbersNone
Natural Product Identification
Common NameDechdigliotoxin B
Provided ByNPAtlasNPAtlas Logo
Description Dechdigliotoxin B is found in Aspergillus cejpii and Dichotomomyces. It was first documented in 2019 (PMID: 31652800). Based on a literature review very few articles have been published on Dechdigliotoxin B.
Structure
Thumb
Synonyms
ValueSource
(3S,5AS,6S,10ar)-3-{[(3S,5as,6S,10ar)-6-hydroxy-3-(hydroxymethyl)-2-methyl-3-(methylsulfanyl)-1,4-dioxo-1H,2H,3H,4H,5ah,6H,10H,10ah-pyrazino[1,2-a]indol-10a-yl]disulfanyl}-10a-hydroxy-3-(hydroxymethyl)-2-methyl-1,4-dioxo-1H,2H,3H,4H,5ah,6H,10H,10ah-pyrazino[1,2-a]indol-6-yl acetic acidGenerator
(3S,5AS,6S,10ar)-3-{[(3S,5as,6S,10ar)-6-hydroxy-3-(hydroxymethyl)-2-methyl-3-(methylsulphanyl)-1,4-dioxo-1H,2H,3H,4H,5ah,6H,10H,10ah-pyrazino[1,2-a]indol-10a-yl]disulphanyl}-10a-hydroxy-3-(hydroxymethyl)-2-methyl-1,4-dioxo-1H,2H,3H,4H,5ah,6H,10H,10ah-pyrazino[1,2-a]indol-6-yl acetateGenerator
(3S,5AS,6S,10ar)-3-{[(3S,5as,6S,10ar)-6-hydroxy-3-(hydroxymethyl)-2-methyl-3-(methylsulphanyl)-1,4-dioxo-1H,2H,3H,4H,5ah,6H,10H,10ah-pyrazino[1,2-a]indol-10a-yl]disulphanyl}-10a-hydroxy-3-(hydroxymethyl)-2-methyl-1,4-dioxo-1H,2H,3H,4H,5ah,6H,10H,10ah-pyrazino[1,2-a]indol-6-yl acetic acidGenerator
Chemical FormulaC29H34N4O10S3
Average Mass694.7900 Da
Monoisotopic Mass694.14371 Da
IUPAC Name(3S,5aS,6S,10aR)-3-{[(3S,5aS,6S,10aR)-6-hydroxy-3-(hydroxymethyl)-2-methyl-3-(methylsulfanyl)-1,4-dioxo-1H,2H,3H,4H,5aH,6H,10H,10aH-pyrazino[1,2-a]indol-10a-yl]disulfanyl}-10a-hydroxy-3-(hydroxymethyl)-2-methyl-1,4-dioxo-1H,2H,3H,4H,5aH,6H,10H,10aH-pyrazino[1,2-a]indol-6-yl acetate
Traditional Name(3S,5aS,6S,10aR)-3-{[(3S,5aS,6S,10aR)-6-hydroxy-3-(hydroxymethyl)-2-methyl-3-(methylsulfanyl)-1,4-dioxo-5aH,6H,10H-pyrazino[1,2-a]indol-10a-yl]disulfanyl}-10a-hydroxy-3-(hydroxymethyl)-2-methyl-1,4-dioxo-5aH,6H,10H-pyrazino[1,2-a]indol-6-yl acetate
CAS Registry NumberNot Available
SMILES
CS[C@]1(CO)N(C)C(=O)[C@@]2(CC3=CC=C[C@H](O)[C@H]3N2C1=O)SS[C@]1(CO)N(C)C(=O)[C@]2(O)CC3=CC=C[C@H](OC(C)=O)[C@H]3N2C1=O
InChI Identifier
InChI=1S/C29H34N4O10S3/c1-15(36)43-19-10-6-8-16-11-26(42)22(38)30(2)29(14-35,25(41)32(26)21(16)19)46-45-27-12-17-7-5-9-18(37)20(17)33(27)24(40)28(13-34,44-4)31(3)23(27)39/h5-10,18-21,34-35,37,42H,11-14H2,1-4H3/t18-,19-,20-,21-,26+,27+,28-,29-/m0/s1
InChI KeyPHCFMFOYPKZIBZ-ZZUVUVCTSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Aspergillus cejpiiLOTUS Database
DichotomomycesNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.36ALOGPS
logP-0.4ChemAxon
logS-3.7ALOGPS
pKa (Strongest Acidic)11.07ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area188.46 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity172.85 m³·mol⁻¹ChemAxon
Polarizability66.19 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA026669
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID81361116
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146683091
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Liu Z, Fan Z, Sun Z, Liu H, Zhang W: Dechdigliotoxins A-C, Three Novel Disulfide-Bridged Gliotoxin Dimers from Deep-Sea Sediment Derived Fungus Dichotomomyces cejpii. Mar Drugs. 2019 Oct 23;17(11). pii: md17110596. doi: 10.3390/md17110596. [PubMed:31652800 ]