NP-MRD: Showing NP-Card for Sordaricin B (NP0020532)

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Record Information

Version

2.0

Created at

2021-01-06 05:56:41 UTC

Updated at

2021-07-15 17:33:55 UTC

NP-MRD ID

NP0020532

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Sordaricin B

Provided By

NPAtlas

Description

Sordaricin B is found in Curvularia. Sordaricin B was first documented in 2019 (PMID: 31478377).

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242120303D          

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   -2.6926   -2.2716   -1.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6002    0.6473    1.0929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4354   -1.9880    0.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8065   -1.4933    1.8715 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7693   -2.6748    1.2231 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8824   -1.3895    1.7717 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3031   -2.8535    3.2671 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1776   -0.1444   -2.5843 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  8 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  6  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 22  4  1  0  0  0  0
 19  6  1  0  0  0  0
 22  8  1  0  0  0  0
 17 12  1  0  0  0  0
  1 26  1  0  0  0  0
  1 27  1  0  0  0  0
  1 28  1  0  0  0  0
  2 29  1  6  0  0  0
  3 30  1  0  0  0  0
  3 31  1  0  0  0  0
  3 32  1  0  0  0  0
  5 33  1  0  0  0  0
  6 34  1  1  0  0  0
  7 35  1  0  0  0  0
  7 36  1  0  0  0  0
 11 37  1  0  0  0  0
 12 38  1  6  0  0  0
 13 39  1  0  0  0  0
 13 40  1  0  0  0  0
 14 41  1  0  0  0  0
 14 42  1  0  0  0  0
 15 43  1  1  0  0  0
 16 44  1  0  0  0  0
 16 45  1  0  0  0  0
 16 46  1  0  0  0  0
 17 47  1  1  0  0  0
 18 48  1  0  0  0  0
 18 49  1  0  0  0  0
 20 50  1  0  0  0  0
 20 51  1  0  0  0  0
 21 52  1  0  0  0  0
 25 53  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0020532

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@@]12C(=C([H])[C@@]3([H])C([H])([H])[C@]1(C(=O)O[H])[C@]1([H])C([H])([H])C([H])([H])[C@@]([H])(C([H])([H])[H])[C@@]1([H])C([H])([H])[C@@]23C([H])([H])O[H])C([H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C20H28O5/c1-10(2)15-6-12-7-19(16(22)23)14-5-4-11(3)13(14)8-18(12,9-21)20(15,19)17(24)25/h6,10-14,21H,4-5,7-9H2,1-3H3,(H,22,23)(H,24,25)/t11-,12+,13-,14-,18+,19-,20-/m1/s1

> <INCHI_KEY>
JDHBTAMRRVLZRQ-UMRHBMKWSA-N

> <FORMULA>
C20H28O5

> <MOLECULAR_WEIGHT>
348.439

> <EXACT_MASS>
348.193674002

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
37.11833944415885

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2S,4R,5R,8R,9R,11R)-2-(hydroxymethyl)-5-methyl-13-(propan-2-yl)tetracyclo[7.4.0.0^{2,11}.0^{4,8}]tridec-12-ene-1,9-dicarboxylic acid

> <ALOGPS_LOGP>
1.71

> <JCHEM_LOGP>
2.345719398999999

> <ALOGPS_LOGS>
-3.08

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
5.8033913839963125

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.707224671323328

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7806399509323745

> <JCHEM_POLAR_SURFACE_AREA>
94.83

> <JCHEM_REFRACTIVITY>
91.82319999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.89e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,4R,5R,8R,9R,11R)-2-(hydroxymethyl)-13-isopropyl-5-methyltetracyclo[7.4.0.0^{2,11}.0^{4,8}]tridec-12-ene-1,9-dicarboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 53 56  0  0  0  0  0  0  0  0999 V2000
    4.2138    1.0062    1.0656 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2562    0.4643    0.0400 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8042   -0.8813   -0.4115 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8825    0.3774    0.5817 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5773    0.7087    1.8658 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0882    0.6272    1.9117 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3581    1.7326    1.0239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2795    1.1454   -0.3649 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2902    2.0927   -1.3289 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7615    3.2175   -0.9391 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3744    1.8819   -2.6923 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5458    0.5542   -0.8443 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5770    1.4291   -1.4315 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7220    0.4120   -1.5684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5503   -0.5136   -0.3735 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5520   -1.9610   -0.7689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3093   -0.0656    0.3180 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4393   -1.1033    0.8950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0588   -0.6628    1.0987 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8186   -1.6936    1.7524 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4219   -1.9053    3.0687 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6465   -0.0591   -0.1190 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7761   -0.9332   -1.2321 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4183   -2.1561   -1.1402 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2768   -0.5574   -2.4541 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9488    2.0248    1.4167 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2599    0.8980    0.7576 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0988    0.3479    1.9764 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3171    1.1419   -0.8430 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6188   -1.2420    0.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0028   -1.6316   -0.3475 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2692   -0.8194   -1.4181 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2737    0.9656    2.6457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3341    0.5752    2.8916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3144    2.1986    1.2707 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3725    2.5992    1.0187 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0329    2.5302   -3.3915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3278   -0.2754   -1.5507 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9174    2.1629   -0.6906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3223    1.8689   -2.4122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4634   -0.1878   -2.4722 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6966    0.8899   -1.6109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4450   -0.3551    0.2660 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4683   -2.1237   -1.3928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7175   -2.5572    0.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6926   -2.2716   -1.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6002    0.6473    1.0929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4354   -1.9880    0.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8065   -1.4933    1.8715 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7693   -2.6748    1.2231 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8824   -1.3895    1.7717 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3031   -2.8535    3.2671 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1776   -0.1444   -2.5843 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  6
  9 10  2  0
  9 11  1  0
  8 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  1
 20 21  1  0
 19 22  1  0
 22 23  1  6
 23 24  2  0
 23 25  1  0
 22  4  1  0
 19  6  1  0
 22  8  1  0
 17 12  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  6
  3 30  1  0
  3 31  1  0
  3 32  1  0
  5 33  1  0
  6 34  1  1
  7 35  1  0
  7 36  1  0
 11 37  1  0
 12 38  1  6
 13 39  1  0
 13 40  1  0
 14 41  1  0
 14 42  1  0
 15 43  1  1
 16 44  1  0
 16 45  1  0
 16 46  1  0
 17 47  1  1
 18 48  1  0
 18 49  1  0
 20 50  1  0
 20 51  1  0
 21 52  1  0
 25 53  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       4.214   1.006   1.066  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.256   0.464   0.040  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.804  -0.881  -0.412  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.883   0.377   0.582  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.577   0.709   1.866  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.088   0.627   1.912  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.358   1.733   1.024  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.280   1.145  -0.365  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.290   2.093  -1.329  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.762   3.217  -0.939  0.00  0.00           O+0
HETATM   11  O   UNK     0       0.374   1.882  -2.692  0.00  0.00           O+0
HETATM   12  C   UNK     0      -1.546   0.554  -0.844  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.577   1.429  -1.432  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.722   0.412  -1.568  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.550  -0.514  -0.374  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.552  -1.961  -0.769  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.309  -0.066   0.318  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.439  -1.103   0.895  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.059  -0.663   1.099  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.819  -1.694   1.752  0.00  0.00           C+0
HETATM   21  O   UNK     0       0.422  -1.905   3.069  0.00  0.00           O+0
HETATM   22  C   UNK     0       0.647  -0.059  -0.119  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.776  -0.933  -1.232  0.00  0.00           C+0
HETATM   24  O   UNK     0       0.418  -2.156  -1.140  0.00  0.00           O+0
HETATM   25  O   UNK     0       1.277  -0.557  -2.454  0.00  0.00           O+0
HETATM   26  H   UNK     0       3.949   2.025   1.417  0.00  0.00           H+0
HETATM   27  H   UNK     0       5.260   0.898   0.758  0.00  0.00           H+0
HETATM   28  H   UNK     0       4.099   0.348   1.976  0.00  0.00           H+0
HETATM   29  H   UNK     0       3.317   1.142  -0.843  0.00  0.00           H+0
HETATM   30  H   UNK     0       4.619  -1.242   0.267  0.00  0.00           H+0
HETATM   31  H   UNK     0       3.003  -1.632  -0.348  0.00  0.00           H+0
HETATM   32  H   UNK     0       4.269  -0.819  -1.418  0.00  0.00           H+0
HETATM   33  H   UNK     0       2.274   0.966   2.646  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.334   0.575   2.892  0.00  0.00           H+0
HETATM   35  H   UNK     0      -1.314   2.199   1.271  0.00  0.00           H+0
HETATM   36  H   UNK     0       0.373   2.599   1.019  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.033   2.530  -3.392  0.00  0.00           H+0
HETATM   38  H   UNK     0      -1.328  -0.275  -1.551  0.00  0.00           H+0
HETATM   39  H   UNK     0      -2.917   2.163  -0.691  0.00  0.00           H+0
HETATM   40  H   UNK     0      -2.322   1.869  -2.412  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.463  -0.188  -2.472  0.00  0.00           H+0
HETATM   42  H   UNK     0      -4.697   0.890  -1.611  0.00  0.00           H+0
HETATM   43  H   UNK     0      -4.445  -0.355   0.266  0.00  0.00           H+0
HETATM   44  H   UNK     0      -4.468  -2.124  -1.393  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.717  -2.557   0.156  0.00  0.00           H+0
HETATM   46  H   UNK     0      -2.693  -2.272  -1.358  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.600   0.647   1.093  0.00  0.00           H+0
HETATM   48  H   UNK     0      -1.435  -1.988   0.226  0.00  0.00           H+0
HETATM   49  H   UNK     0      -1.807  -1.493   1.871  0.00  0.00           H+0
HETATM   50  H   UNK     0       0.769  -2.675   1.223  0.00  0.00           H+0
HETATM   51  H   UNK     0       1.882  -1.389   1.772  0.00  0.00           H+0
HETATM   52  H   UNK     0       0.303  -2.853   3.267  0.00  0.00           H+0
HETATM   53  H   UNK     0       2.178  -0.144  -2.584  0.00  0.00           H+0
CONECT    1    2   26   27   28                                             
CONECT    2    1    3    4   29                                             
CONECT    3    2   30   31   32                                             
CONECT    4    2    5   22                                                  
CONECT    5    4    6   33                                                  
CONECT    6    5    7   19   34                                             
CONECT    7    6    8   35   36                                             
CONECT    8    7    9   12   22                                             
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   37                                                       
CONECT   12    8   13   17   38                                             
CONECT   13   12   14   39   40                                             
CONECT   14   13   15   41   42                                             
CONECT   15   14   16   17   43                                             
CONECT   16   15   44   45   46                                             
CONECT   17   15   18   12   47                                             
CONECT   18   17   19   48   49                                             
CONECT   19   18   20   22    6                                             
CONECT   20   19   21   50   51                                             
CONECT   21   20   52                                                       
CONECT   22   19   23    4    8                                             
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   53                                                       
CONECT   26    1                                                            
CONECT   27    1                                                            
CONECT   28    1                                                            
CONECT   29    2                                                            
CONECT   30    3                                                            
CONECT   31    3                                                            
CONECT   32    3                                                            
CONECT   33    5                                                            
CONECT   34    6                                                            
CONECT   35    7                                                            
CONECT   36    7                                                            
CONECT   37   11                                                            
CONECT   38   12                                                            
CONECT   39   13                                                            
CONECT   40   13                                                            
CONECT   41   14                                                            
CONECT   42   14                                                            
CONECT   43   15                                                            
CONECT   44   16                                                            
CONECT   45   16                                                            
CONECT   46   16                                                            
CONECT   47   17                                                            
CONECT   48   18                                                            
CONECT   49   18                                                            
CONECT   50   20                                                            
CONECT   51   20                                                            
CONECT   52   21                                                            
CONECT   53   25                                                            
MASTER        0    0    0    0    0    0    0    0   53    0  112    0
END

RDKit          3D

53 56  0  0  0  0  0  0  0  0999 V2000
    4.2138    1.0062    1.0656 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2562    0.4643    0.0400 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8042   -0.8813   -0.4115 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8825    0.3774    0.5817 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5773    0.7087    1.8658 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0882    0.6272    1.9117 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3581    1.7326    1.0239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2795    1.1454   -0.3649 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2902    2.0927   -1.3289 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7615    3.2175   -0.9391 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3744    1.8819   -2.6923 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5458    0.5542   -0.8443 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5770    1.4291   -1.4315 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7220    0.4120   -1.5684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5503   -0.5136   -0.3735 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5520   -1.9610   -0.7689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3093   -0.0656    0.3180 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4393   -1.1033    0.8950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0588   -0.6628    1.0987 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8186   -1.6936    1.7524 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4219   -1.9053    3.0687 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6465   -0.0591   -0.1190 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7761   -0.9332   -1.2321 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4183   -2.1561   -1.1402 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2768   -0.5574   -2.4541 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9488    2.0248    1.4167 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2599    0.8980    0.7576 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0988    0.3479    1.9764 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3171    1.1419   -0.8430 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6188   -1.2420    0.2666 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0028   -1.6316   -0.3475 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2692   -0.8194   -1.4181 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2737    0.9656    2.6457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3341    0.5752    2.8916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3144    2.1986    1.2707 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3725    2.5992    1.0187 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0329    2.5302   -3.3915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3278   -0.2754   -1.5507 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9174    2.1629   -0.6906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3223    1.8689   -2.4122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4634   -0.1878   -2.4722 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6966    0.8899   -1.6109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4450   -0.3551    0.2660 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4683   -2.1237   -1.3928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7175   -2.5572    0.1561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6926   -2.2716   -1.3579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6002    0.6473    1.0929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4354   -1.9880    0.2263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8065   -1.4933    1.8715 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7693   -2.6748    1.2231 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8824   -1.3895    1.7717 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3031   -2.8535    3.2671 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1776   -0.1444   -2.5843 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  6
  9 10  2  0
  9 11  1  0
  8 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  1
 20 21  1  0
 19 22  1  0
 22 23  1  6
 23 24  2  0
 23 25  1  0
 22  4  1  0
 19  6  1  0
 22  8  1  0
 17 12  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  6
  3 30  1  0
  3 31  1  0
  3 32  1  0
  5 33  1  0
  6 34  1  1
  7 35  1  0
  7 36  1  0
 11 37  1  0
 12 38  1  6
 13 39  1  0
 13 40  1  0
 14 41  1  0
 14 42  1  0
 15 43  1  1
 16 44  1  0
 16 45  1  0
 16 46  1  0
 17 47  1  1
 18 48  1  0
 18 49  1  0
 20 50  1  0
 20 51  1  0
 21 52  1  0
 25 53  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₀H₂₈O₅

Average Mass

348.4390 Da

Monoisotopic Mass

348.19367 Da

IUPAC Name

(1R,2S,4R,5R,8R,9R,11R)-2-(hydroxymethyl)-5-methyl-13-(propan-2-yl)tetracyclo[7.4.0.0^{2,11}.0^{4,8}]tridec-12-ene-1,9-dicarboxylic acid

Traditional Name

(1R,2S,4R,5R,8R,9R,11R)-2-(hydroxymethyl)-13-isopropyl-5-methyltetracyclo[7.4.0.0^{2,11}.0^{4,8}]tridec-12-ene-1,9-dicarboxylic acid

CAS Registry Number

Not Available

SMILES

CC(C)C1=C[C@H]2C[C@]3([C@@H]4CC[C@@H](C)[C@H]4C[C@@]2(CO)[C@]13C(O)=O)C(O)=O

InChI Identifier

InChI=1S/C20H28O5/c1-10(2)15-6-12-7-19(16(22)23)14-5-4-11(3)13(14)8-18(12,9-21)20(15,19)17(24)25/h6,10-14,21H,4-5,7-9H2,1-3H3,(H,22,23)(H,24,25)/t11-,12+,13-,14-,18+,19+,20-/m1/s1

InChI Key

JDHBTAMRRVLZRQ-UMRHBMKWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Curvularia	NPAtlas	31478377

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.71	ALOGPS
logP	2.35	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Acidic)	4.71	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	94.83 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	91.82 m³·mol⁻¹	ChemAxon
Polarizability	37.12 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Zhang MQ, Xu KX, Xue Y, Cao F, Yang LJ, Hou XM, Wang CY, Shao CL: Sordarin Diterpene Glycosides with an Unusual 1,3-Dioxolan-4-one Ring from the Zoanthid-Derived Fungus Curvularia hawaiiensis TA26-15. J Nat Prod. 2019 Sep 27;82(9):2477-2482. doi: 10.1021/acs.jnatprod.9b00164. Epub 2019 Sep 3. [PubMed:31478377 ]

Showing NP-Card for Sordaricin B (NP0020532)

MOL for NP0020532 (Sordaricin B)

3D MOL for NP0020532 (Sordaricin B)

3D SDF for NP0020532 (Sordaricin B)

3D-SDF for NP0020532 (Sordaricin B)

PDB for NP0020532 (Sordaricin B)

3D PDB for NP0020532 (Sordaricin B)

SMILES for NP0020532 (Sordaricin B)

INCHI for NP0020532 (Sordaricin B)

Structure for NP0020532 (Sordaricin B)

3D Structure for NP0020532 (Sordaricin B)