Np mrd loader

Record Information
Version2.0
Created at2021-01-06 05:52:42 UTC
Updated at2021-07-15 17:33:43 UTC
NP-MRD IDNP0020456
Secondary Accession NumbersNone
Natural Product Identification
Common NameOmnipeptin
Provided ByNPAtlasNPAtlas Logo
Description Omnipeptin is found in Streptomyces albus. Based on a literature review very few articles have been published on (4R)-4-{[(1S)-1-{[(4S,7S,10S,13R,16S,21aS)-16-benzyl-10-[(6-chloro-1H-indol-3-yl)methyl]-5,8,11,14,21-pentahydroxy-7-[1-(C-hydroxycarbonimidoyl)ethyl]-20-methyl-1,17-dioxo-13-(propan-2-yl)-1H,3H,4H,7H,10H,13H,16H,17H,19H,20H,21H,21aH-pyrrolo[2,1-c]1-oxa-4,7,10,13,16-pentaazacyclononadecan-4-yl]-C-hydroxycarbonimidoyl}-2-hydroxypropyl]-C-hydroxycarbonimidoyl}-4-{[(2S)-2-{[(2S)-2-{[(3S)-3-amino-3-carboxy-1-hydroxypropylidene]amino}-1,3-dihydroxy-3-(4-hydroxyphenyl)propylidene]amino}-1,3-dihydroxypropylidene]amino}butanoic acid.
Structure
Thumb
Synonyms
ValueSource
(4R)-4-{[(1S)-1-{[(4S,7S,10S,13R,16S,21as)-16-benzyl-10-[(6-chloro-1H-indol-3-yl)methyl]-5,8,11,14,21-pentahydroxy-7-[1-(C-hydroxycarbonimidoyl)ethyl]-20-methyl-1,17-dioxo-13-(propan-2-yl)-1H,3H,4H,7H,10H,13H,16H,17H,19H,20H,21H,21ah-pyrrolo[2,1-c]1-oxa-4,7,10,13,16-pentaazacyclononadecan-4-yl]-C-hydroxycarbonimidoyl}-2-hydroxypropyl]-C-hydroxycarbonimidoyl}-4-{[(2S)-2-{[(2S)-2-{[(3S)-3-amino-3-carboxy-1-hydroxypropylidene]amino}-1,3-dihydroxy-3-(4-hydroxyphenyl)propylidene]amino}-1,3-dihydroxypropylidene]amino}butanoateGenerator
Chemical FormulaC64H82ClN13O22
Average Mass1420.8800 Da
Monoisotopic Mass1419.53859 Da
IUPAC Name(4R)-4-{[(1S,2R)-1-{[(4S,7S,10S,13R,16S,20R,21R,21aS)-16-benzyl-7-[(1R)-1-carbamoylethyl]-10-[(6-chloro-1H-indol-3-yl)methyl]-21-hydroxy-20-methyl-1,5,8,11,14,17-hexaoxo-13-(propan-2-yl)-icosahydropyrrolo[2,1-c]1-oxa-4,7,10,13,16-pentaazacyclononadecan-4-yl]carbamoyl}-2-hydroxypropyl]carbamoyl}-4-[(2S)-2-[(2S,3R)-2-[(3S)-3-amino-3-carboxypropanamido]-3-hydroxy-3-(4-hydroxyphenyl)propanamido]-3-hydroxypropanamido]butanoic acid
Traditional Name(4R)-4-{[(1S,2R)-1-{[(4S,7S,10S,13R,16S,20R,21R,21aS)-16-benzyl-7-[(1R)-1-carbamoylethyl]-10-[(6-chloro-1H-indol-3-yl)methyl]-21-hydroxy-13-isopropyl-20-methyl-1,5,8,11,14,17-hexaoxo-tetradecahydropyrrolo[2,1-c]1-oxa-4,7,10,13,16-pentaazacyclononadecan-4-yl]carbamoyl}-2-hydroxypropyl]carbamoyl}-4-[(2S)-2-[(2S,3R)-2-[(3S)-3-amino-3-carboxypropanamido]-3-hydroxy-3-(4-hydroxyphenyl)propanamido]-3-hydroxypropanamido]butanoic acid
CAS Registry NumberNot Available
SMILES
CC(O)[C@H](NC(=O)[C@@H](CCC(O)=O)NC(=O)[C@H](CO)NC(=O)[C@@H](NC(=O)C[C@H](N)C(O)=O)C(O)C1=CC=C(O)C=C1)C(=O)N[C@H]1COC(=O)[C@@H]2C(O)C(C)CN2C(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](NC(=O)[C@H](CC2=CNC3=C2C=CC(Cl)=C3)NC(=O)[C@@H](NC1=O)C(C)C(N)=O)C(C)C
InChI Identifier
InChI=1S/C64H82ClN13O22/c1-27(2)46-58(92)71-41(19-31-9-7-6-8-10-31)62(96)78-24-28(3)51(85)50(78)64(99)100-26-43(57(91)76-47(29(4)53(67)87)59(93)70-40(55(89)75-46)20-33-23-68-39-21-34(65)13-16-36(33)39)73-60(94)48(30(5)80)77-54(88)38(17-18-45(83)84)69-56(90)42(25-79)72-61(95)49(74-44(82)22-37(66)63(97)98)52(86)32-11-14-35(81)15-12-32/h6-16,21,23,27-30,37-38,40-43,46-52,68,79-81,85-86H,17-20,22,24-26,66H2,1-5H3,(H2,67,87)(H,69,90)(H,70,93)(H,71,92)(H,72,95)(H,73,94)(H,74,82)(H,75,89)(H,76,91)(H,77,88)(H,83,84)(H,97,98)/t28?,29?,30?,37-,38+,40-,41-,42-,43-,46+,47-,48-,49-,50-,51?,52?/m0/s1
InChI KeyTVZYKKNRWFVGID-XMQDSMCMSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces albusNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.73ALOGPS
logP-7.3ChemAxon
logS-4.3ALOGPS
pKa (Strongest Acidic)1.69ChemAxon
pKa (Strongest Basic)8.39ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count19ChemAxon
Polar Surface Area569.16 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity343.64 m³·mol⁻¹ChemAxon
Polarizability141.37 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA027196
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146683589
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References