NP-MRD: Showing NP-Card for Glidobactin C (NP0020409)

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Record Information

Version

2.0

Created at

2021-01-06 05:50:05 UTC

Updated at

2021-07-15 17:33:35 UTC

NP-MRD ID

NP0020409

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Glidobactin C

Provided By

NPAtlas

Description

Glidobactin C is found in Polyangium. Based on a literature review very few articles have been published on Glidobactin C.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042107513D          

 87 87  0  0  0  0            999 V2000
   11.6934   -2.0009   -0.8593 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2937   -0.7236   -0.3706 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.5503   -0.2425    0.8476 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.0609   -0.0126    0.4376 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.3288    0.4547    1.6249 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.9226    0.8018    1.5513 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9001   -0.1825    1.2201 C   0  0  1  0  0  0  0  0  0  0  0  0
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    3.3913   -1.0581   -0.8369 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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M  END

     RDKit          3D

 87 87  0  0  0  0  0  0  0  0999 V2000
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   12.2937   -0.7236   -0.3706 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.8216    0.8641    0.1449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9409    0.0169   -2.4446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4715   -2.0574   -2.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1604   -1.8750   -1.5656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3683   -3.3461   -0.0703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3981   -3.3570   -0.8782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6675   -2.4783    2.0925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7735   -0.8362    1.4549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1754   -1.8461    0.5909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8867   -3.0118    1.8817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2786   -1.1863    2.6227 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7232    0.9584    3.4611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8813    2.5122    1.7949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9652    3.1692    0.9778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7418    0.8085    1.2001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2022    1.7366    2.7258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9964    2.5244    1.3760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2226    2.3732   -0.9800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4302    3.1801   -1.4068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0173    1.7309   -3.6960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8681    3.5584   -3.5995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4806    2.8065   -3.5588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2146    3.8080   -0.3502 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  2  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  2  0
 28 30  1  0
 30 31  2  0
 31 32  1  0
 32 33  1  0
 32 34  1  0
 34 35  1  0
 35 36  2  0
 17 37  1  0
 37 38  1  0
 37 39  1  0
 35 21  1  0
  1 40  1  0
  1 41  1  0
  1 42  1  0
  2 43  1  0
  2 44  1  0
  3 45  1  0
  3 46  1  0
  4 47  1  0
  4 48  1  0
  5 49  1  0
  5 50  1  0
  6 51  1  0
  6 52  1  0
  7 53  1  0
  7 54  1  0
  8 55  1  0
  8 56  1  0
  9 57  1  0
  9 58  1  0
 10 59  1  0
 11 60  1  0
 12 61  1  0
 13 62  1  0
 16 63  1  0
 17 64  1  1
 20 65  1  0
 21 66  1  6
 22 67  1  0
 22 68  1  0
 23 69  1  6
 24 70  1  0
 25 71  1  0
 25 72  1  0
 26 73  1  0
 26 74  1  0
 27 75  1  0
 30 76  1  0
 31 77  1  0
 32 78  1  6
 33 79  1  0
 33 80  1  0
 33 81  1  0
 34 82  1  0
 37 83  1  6
 38 84  1  0
 38 85  1  0
 38 86  1  0
 39 87  1  0
M  END


  Mrv1652307042107513D          

 87 87  0  0  0  0            999 V2000
   11.6934   -2.0009   -0.8593 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2937   -0.7236   -0.3706 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.5503   -0.2425    0.8476 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.0609   -0.0126    0.4376 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.3288    0.4547    1.6249 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.9226    0.8018    1.5513 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9001   -0.1825    1.2201 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.8978   -0.8075   -0.1260 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6928   -1.7707   -0.2058 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4082   -1.1183    0.0382 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3913   -1.0581   -0.8369 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1540   -0.3887   -0.5003 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1182   -0.2966   -1.3189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0991    0.3993   -0.8903 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1022    0.8893    0.2852 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2581    0.5575   -1.6877 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4370    1.2590   -1.1435 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6824    0.6282   -1.5767 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7076    0.1593   -2.7543 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8703    0.4844   -0.8136 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0436   -0.1211   -1.2808 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.1125   -1.6163   -1.2120 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7972   -2.3545   -0.0080 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4505   -2.8230   -0.0215 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1887   -1.8165    1.3276 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.6426   -1.9772    1.5662 C   0  0  1  0  0  0  0  0  0  0  0  0
   -8.2403   -1.0712    2.4917 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6456   -0.0517    3.2496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0547   -0.0150    4.4821 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6771    0.9308    2.8821 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7655    1.8379    1.9224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8920    2.0051    1.0494 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.2604    1.6944    1.6405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7989    1.5995   -0.3262 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3441    0.4983   -1.0034 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2950   -0.2157   -1.5715 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3390    2.6834   -1.7419 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4277    2.6530   -3.2369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4334    3.4412   -1.2616 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.9865   -1.8257   -1.6903 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.1290   -2.4785   -0.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.5142   -2.6963   -1.1732 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.3617   -0.8289   -0.0780 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2266    0.0951   -1.1347 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4910   -0.9741    1.6567 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8991    0.7669    1.1530 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7914   -0.9613   -0.0109 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1322    0.7650   -0.3562 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5308   -0.2856    2.4894 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8914    1.3789    2.0174 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5908    1.3050    2.5428 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8427    1.7196    0.8377 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9460   -0.9930    2.0143 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8767    0.2962    1.3791 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8661   -0.0825   -0.9435 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7603   -1.5199   -0.2469 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6880   -2.2018   -1.2397 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8632   -2.5411    0.5572 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1901   -0.6282    1.0023 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5665   -1.5390   -1.7904 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0741    0.0725    0.4880 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1972   -0.7423   -2.2873 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2637    0.1748   -2.6428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3123    1.3575   -0.0668 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8216    0.8641    0.1449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9409    0.0169   -2.4446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4715   -2.0574   -2.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1604   -1.8750   -1.5656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3683   -3.3461   -0.0703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3981   -3.3570   -0.8782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6675   -2.4783    2.0925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7735   -0.8362    1.4549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1754   -1.8461    0.5909 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8867   -3.0118    1.8817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2786   -1.1863    2.6227 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7232    0.9584    3.4611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8813    2.5122    1.7949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9652    3.1692    0.9778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7418    0.8085    1.2001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2022    1.7366    2.7258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9964    2.5244    1.3760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2226    2.3732   -0.9800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4302    3.1801   -1.4068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0173    1.7309   -3.6960 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8681    3.5584   -3.5995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4806    2.8065   -3.5588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2146    3.8080   -0.3502 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 17 37  1  0  0  0  0
 37 38  1  0  0  0  0
 37 39  1  0  0  0  0
 35 21  1  0  0  0  0
  1 40  1  0  0  0  0
  1 41  1  0  0  0  0
  1 42  1  0  0  0  0
  2 43  1  0  0  0  0
  2 44  1  0  0  0  0
  3 45  1  0  0  0  0
  3 46  1  0  0  0  0
  4 47  1  0  0  0  0
  4 48  1  0  0  0  0
  5 49  1  0  0  0  0
  5 50  1  0  0  0  0
  6 51  1  0  0  0  0
  6 52  1  0  0  0  0
  7 53  1  0  0  0  0
  7 54  1  0  0  0  0
  8 55  1  0  0  0  0
  8 56  1  0  0  0  0
  9 57  1  0  0  0  0
  9 58  1  0  0  0  0
 10 59  1  0  0  0  0
 11 60  1  0  0  0  0
 12 61  1  0  0  0  0
 13 62  1  0  0  0  0
 16 63  1  0  0  0  0
 17 64  1  1  0  0  0
 20 65  1  0  0  0  0
 21 66  1  6  0  0  0
 22 67  1  0  0  0  0
 22 68  1  0  0  0  0
 23 69  1  6  0  0  0
 24 70  1  0  0  0  0
 25 71  1  0  0  0  0
 25 72  1  0  0  0  0
 26 73  1  0  0  0  0
 26 74  1  0  0  0  0
 27 75  1  0  0  0  0
 30 76  1  0  0  0  0
 31 77  1  0  0  0  0
 32 78  1  6  0  0  0
 33 79  1  0  0  0  0
 33 80  1  0  0  0  0
 33 81  1  0  0  0  0
 34 82  1  0  0  0  0
 37 83  1  6  0  0  0
 38 84  1  0  0  0  0
 38 85  1  0  0  0  0
 38 86  1  0  0  0  0
 39 87  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0020409

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@]([H])(C([H])([H])[H])[C@]([H])(N([H])C(=O)C(\[H])=C(/[H])\C(\[H])=C(/[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])C(=O)N([H])[C@]1([H])C(=O)N([H])[C@]([H])(\C([H])=C([H])/C(=O)N([H])C([H])([H])C([H])([H])[C@]([H])(O[H])C1([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C29H48N4O6/c1-4-5-6-7-8-9-10-11-12-13-14-15-26(37)33-27(22(3)34)29(39)32-24-20-23(35)18-19-30-25(36)17-16-21(2)31-28(24)38/h12-17,21-24,27,34-35H,4-11,18-20H2,1-3H3,(H,30,36)(H,31,38)(H,32,39)(H,33,37)/b13-12+,15-14+,17-16-/t21-,22+,23-,24-,27-/m0/s1

> <INCHI_KEY>
UHXDSKADPILIPT-OHIHYABUSA-N

> <FORMULA>
C29H48N4O6

> <MOLECULAR_WEIGHT>
548.725

> <EXACT_MASS>
548.357385282

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
87

> <JCHEM_AVERAGE_POLARIZABILITY>
62.452146228635065

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E,4E)-N-[(1S,2R)-2-hydroxy-1-{[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]carbamoyl}propyl]tetradeca-2,4-dienamide

> <ALOGPS_LOGP>
2.92

> <JCHEM_LOGP>
1.66865611

> <ALOGPS_LOGS>
-4.73

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.249296428926598

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.220898189444926

> <JCHEM_PKA_STRONGEST_BASIC>
-0.18125884950926852

> <JCHEM_POLAR_SURFACE_AREA>
156.85999999999999

> <JCHEM_REFRACTIVITY>
153.95940000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.02e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2E,4E)-N-[(1S,2R)-2-hydroxy-1-{[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]carbamoyl}propyl]tetradeca-2,4-dienamide

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 87 87  0  0  0  0  0  0  0  0999 V2000
   11.6934   -2.0009   -0.8593 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2937   -0.7236   -0.3706 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0      11.693  -2.001  -0.859  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.294  -0.724  -0.371  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.550  -0.243   0.848  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.061  -0.013   0.438  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.329   0.455   1.625  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.923   0.802   1.551  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.900  -0.183   1.220  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.898  -0.808  -0.126  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.693  -1.771  -0.206  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.408  -1.118   0.038  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.391  -1.058  -0.837  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.154  -0.389  -0.500  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.118  -0.297  -1.319  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.099   0.399  -0.890  0.00  0.00           C+0
HETATM   15  O   UNK     0      -0.102   0.889   0.285  0.00  0.00           O+0
HETATM   16  N   UNK     0      -1.258   0.558  -1.688  0.00  0.00           N+0
HETATM   17  C   UNK     0      -2.437   1.259  -1.143  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.682   0.628  -1.577  0.00  0.00           C+0
HETATM   19  O   UNK     0      -3.708   0.159  -2.754  0.00  0.00           O+0
HETATM   20  N   UNK     0      -4.870   0.484  -0.814  0.00  0.00           N+0
HETATM   21  C   UNK     0      -6.044  -0.121  -1.281  0.00  0.00           C+0
HETATM   22  C   UNK     0      -6.112  -1.616  -1.212  0.00  0.00           C+0
HETATM   23  C   UNK     0      -5.797  -2.354  -0.008  0.00  0.00           C+0
HETATM   24  O   UNK     0      -4.450  -2.823  -0.022  0.00  0.00           O+0
HETATM   25  C   UNK     0      -6.189  -1.817   1.328  0.00  0.00           C+0
HETATM   26  C   UNK     0      -7.643  -1.977   1.566  0.00  0.00           C+0
HETATM   27  N   UNK     0      -8.240  -1.071   2.492  0.00  0.00           N+0
HETATM   28  C   UNK     0      -7.646  -0.052   3.250  0.00  0.00           C+0
HETATM   29  O   UNK     0      -8.055  -0.015   4.482  0.00  0.00           O+0
HETATM   30  C   UNK     0      -6.677   0.931   2.882  0.00  0.00           C+0
HETATM   31  C   UNK     0      -6.766   1.838   1.922  0.00  0.00           C+0
HETATM   32  C   UNK     0      -7.892   2.005   1.049  0.00  0.00           C+0
HETATM   33  C   UNK     0      -9.260   1.694   1.641  0.00  0.00           C+0
HETATM   34  N   UNK     0      -7.799   1.599  -0.326  0.00  0.00           N+0
HETATM   35  C   UNK     0      -7.344   0.498  -1.003  0.00  0.00           C+0
HETATM   36  O   UNK     0      -8.295  -0.216  -1.571  0.00  0.00           O+0
HETATM   37  C   UNK     0      -2.339   2.683  -1.742  0.00  0.00           C+0
HETATM   38  C   UNK     0      -2.428   2.653  -3.237  0.00  0.00           C+0
HETATM   39  O   UNK     0      -3.433   3.441  -1.262  0.00  0.00           O+0
HETATM   40  H   UNK     0      10.986  -1.826  -1.690  0.00  0.00           H+0
HETATM   41  H   UNK     0      11.129  -2.478  -0.008  0.00  0.00           H+0
HETATM   42  H   UNK     0      12.514  -2.696  -1.173  0.00  0.00           H+0
HETATM   43  H   UNK     0      13.362  -0.829  -0.078  0.00  0.00           H+0
HETATM   44  H   UNK     0      12.227   0.095  -1.135  0.00  0.00           H+0
HETATM   45  H   UNK     0      11.491  -0.974   1.657  0.00  0.00           H+0
HETATM   46  H   UNK     0      11.899   0.767   1.153  0.00  0.00           H+0
HETATM   47  H   UNK     0       9.791  -0.961  -0.011  0.00  0.00           H+0
HETATM   48  H   UNK     0      10.132   0.765  -0.356  0.00  0.00           H+0
HETATM   49  H   UNK     0       9.531  -0.286   2.489  0.00  0.00           H+0
HETATM   50  H   UNK     0       9.891   1.379   2.017  0.00  0.00           H+0
HETATM   51  H   UNK     0       7.591   1.305   2.543  0.00  0.00           H+0
HETATM   52  H   UNK     0       7.843   1.720   0.838  0.00  0.00           H+0
HETATM   53  H   UNK     0       6.946  -0.993   2.014  0.00  0.00           H+0
HETATM   54  H   UNK     0       5.877   0.296   1.379  0.00  0.00           H+0
HETATM   55  H   UNK     0       6.866  -0.083  -0.944  0.00  0.00           H+0
HETATM   56  H   UNK     0       7.760  -1.520  -0.247  0.00  0.00           H+0
HETATM   57  H   UNK     0       5.688  -2.202  -1.240  0.00  0.00           H+0
HETATM   58  H   UNK     0       5.863  -2.541   0.557  0.00  0.00           H+0
HETATM   59  H   UNK     0       4.190  -0.628   1.002  0.00  0.00           H+0
HETATM   60  H   UNK     0       3.567  -1.539  -1.790  0.00  0.00           H+0
HETATM   61  H   UNK     0       2.074   0.073   0.488  0.00  0.00           H+0
HETATM   62  H   UNK     0       1.197  -0.742  -2.287  0.00  0.00           H+0
HETATM   63  H   UNK     0      -1.264   0.175  -2.643  0.00  0.00           H+0
HETATM   64  H   UNK     0      -2.312   1.357  -0.067  0.00  0.00           H+0
HETATM   65  H   UNK     0      -4.822   0.864   0.145  0.00  0.00           H+0
HETATM   66  H   UNK     0      -5.941   0.017  -2.445  0.00  0.00           H+0
HETATM   67  H   UNK     0      -5.471  -2.057  -2.045  0.00  0.00           H+0
HETATM   68  H   UNK     0      -7.160  -1.875  -1.566  0.00  0.00           H+0
HETATM   69  H   UNK     0      -6.368  -3.346  -0.070  0.00  0.00           H+0
HETATM   70  H   UNK     0      -4.398  -3.357  -0.878  0.00  0.00           H+0
HETATM   71  H   UNK     0      -5.668  -2.478   2.092  0.00  0.00           H+0
HETATM   72  H   UNK     0      -5.774  -0.836   1.455  0.00  0.00           H+0
HETATM   73  H   UNK     0      -8.175  -1.846   0.591  0.00  0.00           H+0
HETATM   74  H   UNK     0      -7.887  -3.012   1.882  0.00  0.00           H+0
HETATM   75  H   UNK     0      -9.279  -1.186   2.623  0.00  0.00           H+0
HETATM   76  H   UNK     0      -5.723   0.958   3.461  0.00  0.00           H+0
HETATM   77  H   UNK     0      -5.881   2.512   1.795  0.00  0.00           H+0
HETATM   78  H   UNK     0      -7.965   3.169   0.978  0.00  0.00           H+0
HETATM   79  H   UNK     0      -9.742   0.809   1.200  0.00  0.00           H+0
HETATM   80  H   UNK     0      -9.202   1.737   2.726  0.00  0.00           H+0
HETATM   81  H   UNK     0      -9.996   2.524   1.376  0.00  0.00           H+0
HETATM   82  H   UNK     0      -8.223   2.373  -0.980  0.00  0.00           H+0
HETATM   83  H   UNK     0      -1.430   3.180  -1.407  0.00  0.00           H+0
HETATM   84  H   UNK     0      -2.017   1.731  -3.696  0.00  0.00           H+0
HETATM   85  H   UNK     0      -1.868   3.558  -3.599  0.00  0.00           H+0
HETATM   86  H   UNK     0      -3.481   2.807  -3.559  0.00  0.00           H+0
HETATM   87  H   UNK     0      -3.215   3.808  -0.350  0.00  0.00           H+0
CONECT    1    2   40   41   42                                             
CONECT    2    1    3   43   44                                             
CONECT    3    2    4   45   46                                             
CONECT    4    3    5   47   48                                             
CONECT    5    4    6   49   50                                             
CONECT    6    5    7   51   52                                             
CONECT    7    6    8   53   54                                             
CONECT    8    7    9   55   56                                             
CONECT    9    8   10   57   58                                             
CONECT   10    9   11   59                                                  
CONECT   11   10   12   60                                                  
CONECT   12   11   13   61                                                  
CONECT   13   12   14   62                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   63                                                  
CONECT   17   16   18   37   64                                             
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   65                                                  
CONECT   21   20   22   35   66                                             
CONECT   22   21   23   67   68                                             
CONECT   23   22   24   25   69                                             
CONECT   24   23   70                                                       
CONECT   25   23   26   71   72                                             
CONECT   26   25   27   73   74                                             
CONECT   27   26   28   75                                                  
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   76                                                  
CONECT   31   30   32   77                                                  
CONECT   32   31   33   34   78                                             
CONECT   33   32   79   80   81                                             
CONECT   34   32   35   82                                                  
CONECT   35   34   36   21                                                  
CONECT   36   35                                                            
CONECT   37   17   38   39   83                                             
CONECT   38   37   84   85   86                                             
CONECT   39   37   87                                                       
CONECT   40    1                                                            
CONECT   41    1                                                            
CONECT   42    1                                                            
CONECT   43    2                                                            
CONECT   44    2                                                            
CONECT   45    3                                                            
CONECT   46    3                                                            
CONECT   47    4                                                            
CONECT   48    4                                                            
CONECT   49    5                                                            
CONECT   50    5                                                            
CONECT   51    6                                                            
CONECT   52    6                                                            
CONECT   53    7                                                            
CONECT   54    7                                                            
CONECT   55    8                                                            
CONECT   56    8                                                            
CONECT   57    9                                                            
CONECT   58    9                                                            
CONECT   59   10                                                            
CONECT   60   11                                                            
CONECT   61   12                                                            
CONECT   62   13                                                            
CONECT   63   16                                                            
CONECT   64   17                                                            
CONECT   65   20                                                            
CONECT   66   21                                                            
CONECT   67   22                                                            
CONECT   68   22                                                            
CONECT   69   23                                                            
CONECT   70   24                                                            
CONECT   71   25                                                            
CONECT   72   25                                                            
CONECT   73   26                                                            
CONECT   74   26                                                            
CONECT   75   27                                                            
CONECT   76   30                                                            
CONECT   77   31                                                            
CONECT   78   32                                                            
CONECT   79   33                                                            
CONECT   80   33                                                            
CONECT   81   33                                                            
CONECT   82   34                                                            
CONECT   83   37                                                            
CONECT   84   38                                                            
CONECT   85   38                                                            
CONECT   86   38                                                            
CONECT   87   39                                                            
MASTER        0    0    0    0    0    0    0    0   87    0  174    0
END

RDKit          3D

87 87  0  0  0  0  0  0  0  0999 V2000
   11.6934   -2.0009   -0.8593 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2937   -0.7236   -0.3706 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5665   -1.5390   -1.7904 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.6675   -2.4783    2.0925 H   0  0  0  0  0  0  0  0  0  0  0  0
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 39 87  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₉H₄₈N₄O₆

Average Mass

548.7250 Da

Monoisotopic Mass

548.35739 Da

IUPAC Name

(2E,4E)-N-[(1S,2R)-2-hydroxy-1-{[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]carbamoyl}propyl]tetradeca-2,4-dienamide

Traditional Name

(2E,4E)-N-[(1S,2R)-2-hydroxy-1-{[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]carbamoyl}propyl]tetradeca-2,4-dienamide

CAS Registry Number

Not Available

SMILES

CCCCCCCCC\C=C\C=C\C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@H]1C[C@@H](O)CCNC(=O)\C=C/[C@H](C)NC1=O

InChI Identifier

InChI=1S/C29H48N4O6/c1-4-5-6-7-8-9-10-11-12-13-14-15-26(37)33-27(22(3)34)29(39)32-24-20-23(35)18-19-30-25(36)17-16-21(2)31-28(24)38/h12-17,21-24,27,34-35H,4-11,18-20H2,1-3H3,(H,30,36)(H,31,38)(H,32,39)(H,33,37)/b13-12+,15-14+,17-16-/t21-,22+,23-,24-,27-/m0/s1

InChI Key

UHXDSKADPILIPT-OHIHYABUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Polyangium	NPAtlas	3142841

Species Where Detected

Species Name	Source	Reference
Polyangium brachysporum sp. nov. No. K481-B101	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.92	ALOGPS
logP	1.67	ChemAxon
logS	-4.7	ALOGPS
pKa (Strongest Acidic)	12.22	ChemAxon
pKa (Strongest Basic)	-0.18	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	156.86 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	153.96 m³·mol⁻¹	ChemAxon
Polarizability	62.45 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA020765

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00017619

Chemspider ID

4943596

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6439167

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Glidobactin C (NP0020409)

MOL for NP0020409 (Glidobactin C)

3D MOL for NP0020409 (Glidobactin C)

3D SDF for NP0020409 (Glidobactin C)

3D-SDF for NP0020409 (Glidobactin C)

PDB for NP0020409 (Glidobactin C)

3D PDB for NP0020409 (Glidobactin C)

SMILES for NP0020409 (Glidobactin C)

INCHI for NP0020409 (Glidobactin C)

Structure for NP0020409 (Glidobactin C)

3D Structure for NP0020409 (Glidobactin C)