Showing NP-Card for Glidobactin B (NP0020408)
| Record Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Version | 2.0 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Created at | 2021-01-06 05:50:03 UTC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Updated at | 2021-07-15 17:33:35 UTC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NP-MRD ID | NP0020408 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Secondary Accession Numbers | None | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Natural Product Identification | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Common Name | Glidobactin B | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Provided By | NPAtlas![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description | Glidobactin B is found in Polyangium. Based on a literature review a small amount of articles have been published on Glidobactin B. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Structure | MOL for NP0020408 (Glidobactin B)
Mrv1652307042107513D
85 85 0 0 0 0 999 V2000
12.2564 -2.0542 -1.2892 C 0 0 0 0 0 0 0 0 0 0 0 0
12.1556 -0.9315 -2.2848 C 0 0 2 0 0 0 0 0 0 0 0 0
11.5784 0.3389 -1.7341 C 0 0 2 0 0 0 0 0 0 0 0 0
10.1874 0.1201 -1.2226 C 0 0 2 0 0 0 0 0 0 0 0 0
9.6830 1.4766 -0.7089 C 0 0 1 0 0 0 0 0 0 0 0 0
8.2946 1.3230 -0.1810 C 0 0 0 0 0 0 0 0 0 0 0 0
7.6939 0.1445 -0.1847 C 0 0 0 0 0 0 0 0 0 0 0 0
6.3083 0.0756 0.3581 C 0 0 1 0 0 0 0 0 0 0 0 0
5.3534 -0.4409 -0.7258 C 0 0 2 0 0 0 0 0 0 0 0 0
4.0107 -0.4502 -0.0758 C 0 0 0 0 0 0 0 0 0 0 0 0
3.2712 -1.5235 0.0974 C 0 0 0 0 0 0 0 0 0 0 0 0
1.9652 -1.4820 0.7367 C 0 0 0 0 0 0 0 0 0 0 0 0
1.1939 -2.5096 0.9543 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.1307 -2.4428 1.6030 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.7333 -3.5353 1.7629 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.6552 -1.2026 2.0019 N 0 0 0 0 0 0 0 0 0 0 0 0
-1.9475 -1.0084 2.6523 C 0 0 2 0 0 0 0 0 0 0 0 0
-2.9619 -0.8823 1.5746 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.5397 -1.0258 0.3728 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.3282 -0.6210 1.8249 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.3119 -0.5309 0.6973 C 0 0 1 0 0 0 0 0 0 0 0 0
-6.4818 -1.2492 1.1350 C 0 0 1 0 0 0 0 0 0 0 0 0
-7.8543 -0.9684 0.6941 C 0 0 1 0 0 0 0 0 0 0 0 0
-8.6848 -2.0891 1.0404 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.5648 0.2203 1.1857 C 0 0 1 0 0 0 0 0 0 0 0 0
-8.9079 1.1797 0.0311 C 0 0 1 0 0 0 0 0 0 0 0 0
-8.1220 2.3747 0.0990 N 0 0 0 0 0 0 0 0 0 0 0 0
-7.6238 3.2191 -0.8887 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.1595 4.3625 -0.4745 O 0 0 0 0 0 0 0 0 0 0 0 0
-7.5463 3.0182 -2.3194 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.8071 2.1488 -2.9406 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.8770 1.1701 -2.3173 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.3827 -0.2082 -2.6273 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.4498 1.4632 -1.0032 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.3755 0.8351 0.2143 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.3531 1.6423 1.2583 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.9181 0.0959 3.6395 C 0 0 1 0 0 0 0 0 0 0 0 0
-1.4280 1.4062 3.0515 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.1163 0.3453 4.2894 O 0 0 0 0 0 0 0 0 0 0 0 0
13.3347 -2.1182 -0.9652 H 0 0 0 0 0 0 0 0 0 0 0 0
11.6129 -1.9390 -0.4197 H 0 0 0 0 0 0 0 0 0 0 0 0
12.0640 -3.0313 -1.8178 H 0 0 0 0 0 0 0 0 0 0 0 0
11.5171 -1.2834 -3.1416 H 0 0 0 0 0 0 0 0 0 0 0 0
13.1778 -0.6618 -2.6622 H 0 0 0 0 0 0 0 0 0 0 0 0
11.5215 1.1044 -2.5346 H 0 0 0 0 0 0 0 0 0 0 0 0
12.1801 0.7230 -0.8695 H 0 0 0 0 0 0 0 0 0 0 0 0
10.1871 -0.5705 -0.3387 H 0 0 0 0 0 0 0 0 0 0 0 0
9.5397 -0.2781 -2.0174 H 0 0 0 0 0 0 0 0 0 0 0 0
10.3188 1.7231 0.1809 H 0 0 0 0 0 0 0 0 0 0 0 0
9.7356 2.2270 -1.5045 H 0 0 0 0 0 0 0 0 0 0 0 0
7.7478 2.1843 0.2204 H 0 0 0 0 0 0 0 0 0 0 0 0
8.1878 -0.7419 -0.5650 H 0 0 0 0 0 0 0 0 0 0 0 0
6.2990 -0.7256 1.1523 H 0 0 0 0 0 0 0 0 0 0 0 0
5.9688 1.0256 0.7747 H 0 0 0 0 0 0 0 0 0 0 0 0
5.6464 -1.4324 -1.0654 H 0 0 0 0 0 0 0 0 0 0 0 0
5.3651 0.3385 -1.5304 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6212 0.4882 0.2702 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6412 -2.4645 -0.2742 H 0 0 0 0 0 0 0 0 0 0 0 0
1.6355 -0.4988 1.0487 H 0 0 0 0 0 0 0 0 0 0 0 0
1.5938 -3.4775 0.6166 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.1148 -0.3349 1.8440 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.1711 -1.9727 3.1723 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.6423 -0.4995 2.8013 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.7752 -1.1082 -0.0837 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.2681 -2.3613 1.0625 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5219 -1.1297 2.2763 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.9079 -1.0146 -0.4077 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0890 -2.8612 1.0885 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.5573 -0.0267 1.6487 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0360 0.8080 1.9625 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.8475 0.5989 -0.8847 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.9803 1.5372 0.1187 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.8868 2.6529 1.1142 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.1834 3.6903 -2.9794 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.8730 2.1128 -4.0586 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.9598 1.2305 -3.0409 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.9610 -0.9507 -1.9584 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.4976 -0.2628 -2.6067 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1299 -0.5027 -3.6803 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0626 2.4986 -0.9614 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.1874 -0.1169 4.4823 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.3451 1.5849 3.2823 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.0149 2.2792 3.3927 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.5259 1.3524 1.9423 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.0481 0.4009 5.2703 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
2 3 1 0 0 0 0
3 4 1 0 0 0 0
4 5 1 0 0 0 0
5 6 1 0 0 0 0
6 7 2 0 0 0 0
7 8 1 0 0 0 0
8 9 1 0 0 0 0
9 10 1 0 0 0 0
10 11 2 0 0 0 0
11 12 1 0 0 0 0
12 13 2 0 0 0 0
13 14 1 0 0 0 0
14 15 2 0 0 0 0
14 16 1 0 0 0 0
16 17 1 0 0 0 0
17 18 1 0 0 0 0
18 19 2 0 0 0 0
18 20 1 0 0 0 0
20 21 1 0 0 0 0
21 22 1 0 0 0 0
22 23 1 0 0 0 0
23 24 1 0 0 0 0
23 25 1 0 0 0 0
25 26 1 0 0 0 0
26 27 1 0 0 0 0
27 28 1 0 0 0 0
28 29 2 0 0 0 0
28 30 1 0 0 0 0
30 31 2 0 0 0 0
31 32 1 0 0 0 0
32 33 1 0 0 0 0
32 34 1 0 0 0 0
34 35 1 0 0 0 0
35 36 2 0 0 0 0
17 37 1 0 0 0 0
37 38 1 0 0 0 0
37 39 1 0 0 0 0
35 21 1 0 0 0 0
1 40 1 0 0 0 0
1 41 1 0 0 0 0
1 42 1 0 0 0 0
2 43 1 0 0 0 0
2 44 1 0 0 0 0
3 45 1 0 0 0 0
3 46 1 0 0 0 0
4 47 1 0 0 0 0
4 48 1 0 0 0 0
5 49 1 0 0 0 0
5 50 1 0 0 0 0
6 51 1 0 0 0 0
7 52 1 0 0 0 0
8 53 1 0 0 0 0
8 54 1 0 0 0 0
9 55 1 0 0 0 0
9 56 1 0 0 0 0
10 57 1 0 0 0 0
11 58 1 0 0 0 0
12 59 1 0 0 0 0
13 60 1 0 0 0 0
16 61 1 0 0 0 0
17 62 1 1 0 0 0
20 63 1 0 0 0 0
21 64 1 6 0 0 0
22 65 1 0 0 0 0
22 66 1 0 0 0 0
23 67 1 6 0 0 0
24 68 1 0 0 0 0
25 69 1 0 0 0 0
25 70 1 0 0 0 0
26 71 1 0 0 0 0
26 72 1 0 0 0 0
27 73 1 0 0 0 0
30 74 1 0 0 0 0
31 75 1 0 0 0 0
32 76 1 6 0 0 0
33 77 1 0 0 0 0
33 78 1 0 0 0 0
33 79 1 0 0 0 0
34 80 1 0 0 0 0
37 81 1 1 0 0 0
38 82 1 0 0 0 0
38 83 1 0 0 0 0
38 84 1 0 0 0 0
39 85 1 0 0 0 0
M END
3D MOL for NP0020408 (Glidobactin B)
RDKit 3D
85 85 0 0 0 0 0 0 0 0999 V2000
12.2564 -2.0542 -1.2892 C 0 0 0 0 0 0 0 0 0 0 0 0
12.1556 -0.9315 -2.2848 C 0 0 0 0 0 0 0 0 0 0 0 0
11.5784 0.3389 -1.7341 C 0 0 0 0 0 0 0 0 0 0 0 0
10.1874 0.1201 -1.2226 C 0 0 0 0 0 0 0 0 0 0 0 0
9.6830 1.4766 -0.7089 C 0 0 0 0 0 0 0 0 0 0 0 0
8.2946 1.3230 -0.1810 C 0 0 0 0 0 0 0 0 0 0 0 0
7.6939 0.1445 -0.1847 C 0 0 0 0 0 0 0 0 0 0 0 0
6.3083 0.0756 0.3581 C 0 0 0 0 0 0 0 0 0 0 0 0
5.3534 -0.4409 -0.7258 C 0 0 0 0 0 0 0 0 0 0 0 0
4.0107 -0.4502 -0.0758 C 0 0 0 0 0 0 0 0 0 0 0 0
3.2712 -1.5235 0.0974 C 0 0 0 0 0 0 0 0 0 0 0 0
1.9652 -1.4820 0.7367 C 0 0 0 0 0 0 0 0 0 0 0 0
1.1939 -2.5096 0.9543 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.1307 -2.4428 1.6030 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.7333 -3.5353 1.7629 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.6552 -1.2026 2.0019 N 0 0 0 0 0 0 0 0 0 0 0 0
-1.9475 -1.0084 2.6523 C 0 0 2 0 0 0 0 0 0 0 0 0
-2.9619 -0.8823 1.5746 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.5397 -1.0258 0.3728 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.3282 -0.6210 1.8249 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.3119 -0.5309 0.6973 C 0 0 1 0 0 0 0 0 0 0 0 0
-6.4818 -1.2492 1.1350 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.8543 -0.9684 0.6941 C 0 0 1 0 0 0 0 0 0 0 0 0
-8.6848 -2.0891 1.0404 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.5648 0.2203 1.1857 C 0 0 0 0 0 0 0 0 0 0 0 0
-8.9079 1.1797 0.0311 C 0 0 0 0 0 0 0 0 0 0 0 0
-8.1220 2.3747 0.0990 N 0 0 0 0 0 0 0 0 0 0 0 0
-7.6238 3.2191 -0.8887 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.1595 4.3625 -0.4745 O 0 0 0 0 0 0 0 0 0 0 0 0
-7.5463 3.0182 -2.3194 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.8071 2.1488 -2.9406 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.8770 1.1701 -2.3173 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.3827 -0.2082 -2.6273 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.4498 1.4632 -1.0032 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.3755 0.8351 0.2143 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.3531 1.6423 1.2583 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.9181 0.0959 3.6395 C 0 0 1 0 0 0 0 0 0 0 0 0
-1.4280 1.4062 3.0515 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.1163 0.3453 4.2894 O 0 0 0 0 0 0 0 0 0 0 0 0
13.3347 -2.1182 -0.9652 H 0 0 0 0 0 0 0 0 0 0 0 0
11.6129 -1.9390 -0.4197 H 0 0 0 0 0 0 0 0 0 0 0 0
12.0640 -3.0313 -1.8178 H 0 0 0 0 0 0 0 0 0 0 0 0
11.5171 -1.2834 -3.1416 H 0 0 0 0 0 0 0 0 0 0 0 0
13.1778 -0.6618 -2.6622 H 0 0 0 0 0 0 0 0 0 0 0 0
11.5215 1.1044 -2.5346 H 0 0 0 0 0 0 0 0 0 0 0 0
12.1801 0.7230 -0.8695 H 0 0 0 0 0 0 0 0 0 0 0 0
10.1871 -0.5705 -0.3387 H 0 0 0 0 0 0 0 0 0 0 0 0
9.5397 -0.2781 -2.0174 H 0 0 0 0 0 0 0 0 0 0 0 0
10.3188 1.7231 0.1809 H 0 0 0 0 0 0 0 0 0 0 0 0
9.7356 2.2270 -1.5045 H 0 0 0 0 0 0 0 0 0 0 0 0
7.7478 2.1843 0.2204 H 0 0 0 0 0 0 0 0 0 0 0 0
8.1878 -0.7419 -0.5650 H 0 0 0 0 0 0 0 0 0 0 0 0
6.2990 -0.7256 1.1523 H 0 0 0 0 0 0 0 0 0 0 0 0
5.9688 1.0256 0.7747 H 0 0 0 0 0 0 0 0 0 0 0 0
5.6464 -1.4324 -1.0654 H 0 0 0 0 0 0 0 0 0 0 0 0
5.3651 0.3385 -1.5304 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6212 0.4882 0.2702 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6412 -2.4645 -0.2742 H 0 0 0 0 0 0 0 0 0 0 0 0
1.6355 -0.4988 1.0487 H 0 0 0 0 0 0 0 0 0 0 0 0
1.5938 -3.4775 0.6166 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.1148 -0.3349 1.8440 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.1711 -1.9727 3.1723 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.6423 -0.4995 2.8013 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.7752 -1.1082 -0.0837 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.2681 -2.3613 1.0625 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5219 -1.1297 2.2763 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.9079 -1.0146 -0.4077 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0890 -2.8612 1.0885 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.5573 -0.0267 1.6487 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0360 0.8080 1.9625 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.8475 0.5989 -0.8847 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.9803 1.5372 0.1187 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.8868 2.6529 1.1142 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.1834 3.6903 -2.9794 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.8730 2.1128 -4.0586 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.9598 1.2305 -3.0409 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.9610 -0.9507 -1.9584 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.4976 -0.2628 -2.6067 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1299 -0.5027 -3.6803 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0626 2.4986 -0.9614 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.1874 -0.1169 4.4823 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.3451 1.5849 3.2823 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.0149 2.2792 3.3927 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.5259 1.3524 1.9423 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.0481 0.4009 5.2703 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0
2 3 1 0
3 4 1 0
4 5 1 0
5 6 1 0
6 7 2 0
7 8 1 0
8 9 1 0
9 10 1 0
10 11 2 0
11 12 1 0
12 13 2 0
13 14 1 0
14 15 2 0
14 16 1 0
16 17 1 0
17 18 1 0
18 19 2 0
18 20 1 0
20 21 1 0
21 22 1 0
22 23 1 0
23 24 1 0
23 25 1 0
25 26 1 0
26 27 1 0
27 28 1 0
28 29 2 0
28 30 1 0
30 31 2 0
31 32 1 0
32 33 1 0
32 34 1 0
34 35 1 0
35 36 2 0
17 37 1 0
37 38 1 0
37 39 1 0
35 21 1 0
1 40 1 0
1 41 1 0
1 42 1 0
2 43 1 0
2 44 1 0
3 45 1 0
3 46 1 0
4 47 1 0
4 48 1 0
5 49 1 0
5 50 1 0
6 51 1 0
7 52 1 0
8 53 1 0
8 54 1 0
9 55 1 0
9 56 1 0
10 57 1 0
11 58 1 0
12 59 1 0
13 60 1 0
16 61 1 0
17 62 1 1
20 63 1 0
21 64 1 6
22 65 1 0
22 66 1 0
23 67 1 6
24 68 1 0
25 69 1 0
25 70 1 0
26 71 1 0
26 72 1 0
27 73 1 0
30 74 1 0
31 75 1 0
32 76 1 6
33 77 1 0
33 78 1 0
33 79 1 0
34 80 1 0
37 81 1 1
38 82 1 0
38 83 1 0
38 84 1 0
39 85 1 0
M END
3D SDF for NP0020408 (Glidobactin B)
Mrv1652307042107513D
85 85 0 0 0 0 999 V2000
12.2564 -2.0542 -1.2892 C 0 0 0 0 0 0 0 0 0 0 0 0
12.1556 -0.9315 -2.2848 C 0 0 2 0 0 0 0 0 0 0 0 0
11.5784 0.3389 -1.7341 C 0 0 2 0 0 0 0 0 0 0 0 0
10.1874 0.1201 -1.2226 C 0 0 2 0 0 0 0 0 0 0 0 0
9.6830 1.4766 -0.7089 C 0 0 1 0 0 0 0 0 0 0 0 0
8.2946 1.3230 -0.1810 C 0 0 0 0 0 0 0 0 0 0 0 0
7.6939 0.1445 -0.1847 C 0 0 0 0 0 0 0 0 0 0 0 0
6.3083 0.0756 0.3581 C 0 0 1 0 0 0 0 0 0 0 0 0
5.3534 -0.4409 -0.7258 C 0 0 2 0 0 0 0 0 0 0 0 0
4.0107 -0.4502 -0.0758 C 0 0 0 0 0 0 0 0 0 0 0 0
3.2712 -1.5235 0.0974 C 0 0 0 0 0 0 0 0 0 0 0 0
1.9652 -1.4820 0.7367 C 0 0 0 0 0 0 0 0 0 0 0 0
1.1939 -2.5096 0.9543 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.1307 -2.4428 1.6030 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.7333 -3.5353 1.7629 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.6552 -1.2026 2.0019 N 0 0 0 0 0 0 0 0 0 0 0 0
-1.9475 -1.0084 2.6523 C 0 0 2 0 0 0 0 0 0 0 0 0
-2.9619 -0.8823 1.5746 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.5397 -1.0258 0.3728 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.3282 -0.6210 1.8249 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.3119 -0.5309 0.6973 C 0 0 1 0 0 0 0 0 0 0 0 0
-6.4818 -1.2492 1.1350 C 0 0 1 0 0 0 0 0 0 0 0 0
-7.8543 -0.9684 0.6941 C 0 0 1 0 0 0 0 0 0 0 0 0
-8.6848 -2.0891 1.0404 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.5648 0.2203 1.1857 C 0 0 1 0 0 0 0 0 0 0 0 0
-8.9079 1.1797 0.0311 C 0 0 1 0 0 0 0 0 0 0 0 0
-8.1220 2.3747 0.0990 N 0 0 0 0 0 0 0 0 0 0 0 0
-7.6238 3.2191 -0.8887 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.1595 4.3625 -0.4745 O 0 0 0 0 0 0 0 0 0 0 0 0
-7.5463 3.0182 -2.3194 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.8071 2.1488 -2.9406 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.8770 1.1701 -2.3173 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.3827 -0.2082 -2.6273 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.4498 1.4632 -1.0032 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.3755 0.8351 0.2143 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.3531 1.6423 1.2583 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.9181 0.0959 3.6395 C 0 0 1 0 0 0 0 0 0 0 0 0
-1.4280 1.4062 3.0515 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.1163 0.3453 4.2894 O 0 0 0 0 0 0 0 0 0 0 0 0
13.3347 -2.1182 -0.9652 H 0 0 0 0 0 0 0 0 0 0 0 0
11.6129 -1.9390 -0.4197 H 0 0 0 0 0 0 0 0 0 0 0 0
12.0640 -3.0313 -1.8178 H 0 0 0 0 0 0 0 0 0 0 0 0
11.5171 -1.2834 -3.1416 H 0 0 0 0 0 0 0 0 0 0 0 0
13.1778 -0.6618 -2.6622 H 0 0 0 0 0 0 0 0 0 0 0 0
11.5215 1.1044 -2.5346 H 0 0 0 0 0 0 0 0 0 0 0 0
12.1801 0.7230 -0.8695 H 0 0 0 0 0 0 0 0 0 0 0 0
10.1871 -0.5705 -0.3387 H 0 0 0 0 0 0 0 0 0 0 0 0
9.5397 -0.2781 -2.0174 H 0 0 0 0 0 0 0 0 0 0 0 0
10.3188 1.7231 0.1809 H 0 0 0 0 0 0 0 0 0 0 0 0
9.7356 2.2270 -1.5045 H 0 0 0 0 0 0 0 0 0 0 0 0
7.7478 2.1843 0.2204 H 0 0 0 0 0 0 0 0 0 0 0 0
8.1878 -0.7419 -0.5650 H 0 0 0 0 0 0 0 0 0 0 0 0
6.2990 -0.7256 1.1523 H 0 0 0 0 0 0 0 0 0 0 0 0
5.9688 1.0256 0.7747 H 0 0 0 0 0 0 0 0 0 0 0 0
5.6464 -1.4324 -1.0654 H 0 0 0 0 0 0 0 0 0 0 0 0
5.3651 0.3385 -1.5304 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6212 0.4882 0.2702 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6412 -2.4645 -0.2742 H 0 0 0 0 0 0 0 0 0 0 0 0
1.6355 -0.4988 1.0487 H 0 0 0 0 0 0 0 0 0 0 0 0
1.5938 -3.4775 0.6166 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.1148 -0.3349 1.8440 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.1711 -1.9727 3.1723 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.6423 -0.4995 2.8013 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.7752 -1.1082 -0.0837 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.2681 -2.3613 1.0625 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5219 -1.1297 2.2763 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.9079 -1.0146 -0.4077 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0890 -2.8612 1.0885 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.5573 -0.0267 1.6487 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0360 0.8080 1.9625 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.8475 0.5989 -0.8847 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.9803 1.5372 0.1187 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.8868 2.6529 1.1142 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.1834 3.6903 -2.9794 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.8730 2.1128 -4.0586 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.9598 1.2305 -3.0409 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.9610 -0.9507 -1.9584 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.4976 -0.2628 -2.6067 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1299 -0.5027 -3.6803 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0626 2.4986 -0.9614 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.1874 -0.1169 4.4823 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.3451 1.5849 3.2823 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.0149 2.2792 3.3927 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.5259 1.3524 1.9423 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.0481 0.4009 5.2703 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
2 3 1 0 0 0 0
3 4 1 0 0 0 0
4 5 1 0 0 0 0
5 6 1 0 0 0 0
6 7 2 0 0 0 0
7 8 1 0 0 0 0
8 9 1 0 0 0 0
9 10 1 0 0 0 0
10 11 2 0 0 0 0
11 12 1 0 0 0 0
12 13 2 0 0 0 0
13 14 1 0 0 0 0
14 15 2 0 0 0 0
14 16 1 0 0 0 0
16 17 1 0 0 0 0
17 18 1 0 0 0 0
18 19 2 0 0 0 0
18 20 1 0 0 0 0
20 21 1 0 0 0 0
21 22 1 0 0 0 0
22 23 1 0 0 0 0
23 24 1 0 0 0 0
23 25 1 0 0 0 0
25 26 1 0 0 0 0
26 27 1 0 0 0 0
27 28 1 0 0 0 0
28 29 2 0 0 0 0
28 30 1 0 0 0 0
30 31 2 0 0 0 0
31 32 1 0 0 0 0
32 33 1 0 0 0 0
32 34 1 0 0 0 0
34 35 1 0 0 0 0
35 36 2 0 0 0 0
17 37 1 0 0 0 0
37 38 1 0 0 0 0
37 39 1 0 0 0 0
35 21 1 0 0 0 0
1 40 1 0 0 0 0
1 41 1 0 0 0 0
1 42 1 0 0 0 0
2 43 1 0 0 0 0
2 44 1 0 0 0 0
3 45 1 0 0 0 0
3 46 1 0 0 0 0
4 47 1 0 0 0 0
4 48 1 0 0 0 0
5 49 1 0 0 0 0
5 50 1 0 0 0 0
6 51 1 0 0 0 0
7 52 1 0 0 0 0
8 53 1 0 0 0 0
8 54 1 0 0 0 0
9 55 1 0 0 0 0
9 56 1 0 0 0 0
10 57 1 0 0 0 0
11 58 1 0 0 0 0
12 59 1 0 0 0 0
13 60 1 0 0 0 0
16 61 1 0 0 0 0
17 62 1 1 0 0 0
20 63 1 0 0 0 0
21 64 1 6 0 0 0
22 65 1 0 0 0 0
22 66 1 0 0 0 0
23 67 1 6 0 0 0
24 68 1 0 0 0 0
25 69 1 0 0 0 0
25 70 1 0 0 0 0
26 71 1 0 0 0 0
26 72 1 0 0 0 0
27 73 1 0 0 0 0
30 74 1 0 0 0 0
31 75 1 0 0 0 0
32 76 1 6 0 0 0
33 77 1 0 0 0 0
33 78 1 0 0 0 0
33 79 1 0 0 0 0
34 80 1 0 0 0 0
37 81 1 1 0 0 0
38 82 1 0 0 0 0
38 83 1 0 0 0 0
38 84 1 0 0 0 0
39 85 1 0 0 0 0
M END
> <DATABASE_ID>
NP0020408
> <DATABASE_NAME>
NP-MRD
> <SMILES>
[H]O[C@]([H])(C([H])([H])[H])[C@]([H])(N([H])C(=O)C(\[H])=C(/[H])\C(\[H])=C(/[H])C([H])([H])C([H])([H])C(\[H])=C(/[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])C(=O)N([H])[C@]1([H])C(=O)N([H])[C@]([H])(\C([H])=C([H])/C(=O)N([H])C([H])([H])C([H])([H])[C@]([H])(O[H])C1([H])[H])C([H])([H])[H]
> <INCHI_IDENTIFIER>
InChI=1S/C29H46N4O6/c1-4-5-6-7-8-9-10-11-12-13-14-15-26(37)33-27(22(3)34)29(39)32-24-20-23(35)18-19-30-25(36)17-16-21(2)31-28(24)38/h8-9,12-17,21-24,27,34-35H,4-7,10-11,18-20H2,1-3H3,(H,30,36)(H,31,38)(H,32,39)(H,33,37)/b9-8+,13-12+,15-14+,17-16-/t21-,22+,23-,24-,27-/m0/s1
> <INCHI_KEY>
AZHZGGIJCMPFMJ-AECIEKQISA-N
> <FORMULA>
C29H46N4O6
> <MOLECULAR_WEIGHT>
546.709
> <EXACT_MASS>
546.341735217
> <JCHEM_ACCEPTOR_COUNT>
6
> <JCHEM_ATOM_COUNT>
85
> <JCHEM_AVERAGE_POLARIZABILITY>
62.1839828130489
> <JCHEM_BIOAVAILABILITY>
0
> <JCHEM_DONOR_COUNT>
6
> <JCHEM_FORMAL_CHARGE>
0
> <JCHEM_GHOSE_FILTER>
0
> <JCHEM_IUPAC>
(2E,4E,8E)-N-[(1S,2R)-2-hydroxy-1-{[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]carbamoyl}propyl]tetradeca-2,4,8-trienamide
> <ALOGPS_LOGP>
2.75
> <JCHEM_LOGP>
1.3067344533333327
> <ALOGPS_LOGS>
-4.80
> <JCHEM_MDDR_LIKE_RULE>
0
> <JCHEM_NUMBER_OF_RINGS>
1
> <JCHEM_PHYSIOLOGICAL_CHARGE>
0
> <JCHEM_PKA>
13.239468485628294
> <JCHEM_PKA_STRONGEST_ACIDIC>
12.21489103795142
> <JCHEM_PKA_STRONGEST_BASIC>
-0.18125884950927096
> <JCHEM_POLAR_SURFACE_AREA>
156.85999999999999
> <JCHEM_REFRACTIVITY>
155.076
> <JCHEM_ROTATABLE_BOND_COUNT>
13
> <JCHEM_RULE_OF_FIVE>
0
> <ALOGPS_SOLUBILITY>
8.76e-03 g/l
> <JCHEM_TRADITIONAL_IUPAC>
(2E,4E,8E)-N-[(1S,2R)-2-hydroxy-1-{[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]carbamoyl}propyl]tetradeca-2,4,8-trienamide
> <JCHEM_VEBER_RULE>
0
$$$$
3D-SDF for NP0020408 (Glidobactin B)
RDKit 3D
85 85 0 0 0 0 0 0 0 0999 V2000
12.2564 -2.0542 -1.2892 C 0 0 0 0 0 0 0 0 0 0 0 0
12.1556 -0.9315 -2.2848 C 0 0 0 0 0 0 0 0 0 0 0 0
11.5784 0.3389 -1.7341 C 0 0 0 0 0 0 0 0 0 0 0 0
10.1874 0.1201 -1.2226 C 0 0 0 0 0 0 0 0 0 0 0 0
9.6830 1.4766 -0.7089 C 0 0 0 0 0 0 0 0 0 0 0 0
8.2946 1.3230 -0.1810 C 0 0 0 0 0 0 0 0 0 0 0 0
7.6939 0.1445 -0.1847 C 0 0 0 0 0 0 0 0 0 0 0 0
6.3083 0.0756 0.3581 C 0 0 0 0 0 0 0 0 0 0 0 0
5.3534 -0.4409 -0.7258 C 0 0 0 0 0 0 0 0 0 0 0 0
4.0107 -0.4502 -0.0758 C 0 0 0 0 0 0 0 0 0 0 0 0
3.2712 -1.5235 0.0974 C 0 0 0 0 0 0 0 0 0 0 0 0
1.9652 -1.4820 0.7367 C 0 0 0 0 0 0 0 0 0 0 0 0
1.1939 -2.5096 0.9543 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.1307 -2.4428 1.6030 C 0 0 0 0 0 0 0 0 0 0 0 0
-0.7333 -3.5353 1.7629 O 0 0 0 0 0 0 0 0 0 0 0 0
-0.6552 -1.2026 2.0019 N 0 0 0 0 0 0 0 0 0 0 0 0
-1.9475 -1.0084 2.6523 C 0 0 2 0 0 0 0 0 0 0 0 0
-2.9619 -0.8823 1.5746 C 0 0 0 0 0 0 0 0 0 0 0 0
-2.5397 -1.0258 0.3728 O 0 0 0 0 0 0 0 0 0 0 0 0
-4.3282 -0.6210 1.8249 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.3119 -0.5309 0.6973 C 0 0 1 0 0 0 0 0 0 0 0 0
-6.4818 -1.2492 1.1350 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.8543 -0.9684 0.6941 C 0 0 1 0 0 0 0 0 0 0 0 0
-8.6848 -2.0891 1.0404 O 0 0 0 0 0 0 0 0 0 0 0 0
-8.5648 0.2203 1.1857 C 0 0 0 0 0 0 0 0 0 0 0 0
-8.9079 1.1797 0.0311 C 0 0 0 0 0 0 0 0 0 0 0 0
-8.1220 2.3747 0.0990 N 0 0 0 0 0 0 0 0 0 0 0 0
-7.6238 3.2191 -0.8887 C 0 0 0 0 0 0 0 0 0 0 0 0
-7.1595 4.3625 -0.4745 O 0 0 0 0 0 0 0 0 0 0 0 0
-7.5463 3.0182 -2.3194 C 0 0 0 0 0 0 0 0 0 0 0 0
-6.8071 2.1488 -2.9406 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.8770 1.1701 -2.3173 C 0 0 2 0 0 0 0 0 0 0 0 0
-6.3827 -0.2082 -2.6273 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.4498 1.4632 -1.0032 N 0 0 0 0 0 0 0 0 0 0 0 0
-5.3755 0.8351 0.2143 C 0 0 0 0 0 0 0 0 0 0 0 0
-5.3531 1.6423 1.2583 O 0 0 0 0 0 0 0 0 0 0 0 0
-1.9181 0.0959 3.6395 C 0 0 1 0 0 0 0 0 0 0 0 0
-1.4280 1.4062 3.0515 C 0 0 0 0 0 0 0 0 0 0 0 0
-3.1163 0.3453 4.2894 O 0 0 0 0 0 0 0 0 0 0 0 0
13.3347 -2.1182 -0.9652 H 0 0 0 0 0 0 0 0 0 0 0 0
11.6129 -1.9390 -0.4197 H 0 0 0 0 0 0 0 0 0 0 0 0
12.0640 -3.0313 -1.8178 H 0 0 0 0 0 0 0 0 0 0 0 0
11.5171 -1.2834 -3.1416 H 0 0 0 0 0 0 0 0 0 0 0 0
13.1778 -0.6618 -2.6622 H 0 0 0 0 0 0 0 0 0 0 0 0
11.5215 1.1044 -2.5346 H 0 0 0 0 0 0 0 0 0 0 0 0
12.1801 0.7230 -0.8695 H 0 0 0 0 0 0 0 0 0 0 0 0
10.1871 -0.5705 -0.3387 H 0 0 0 0 0 0 0 0 0 0 0 0
9.5397 -0.2781 -2.0174 H 0 0 0 0 0 0 0 0 0 0 0 0
10.3188 1.7231 0.1809 H 0 0 0 0 0 0 0 0 0 0 0 0
9.7356 2.2270 -1.5045 H 0 0 0 0 0 0 0 0 0 0 0 0
7.7478 2.1843 0.2204 H 0 0 0 0 0 0 0 0 0 0 0 0
8.1878 -0.7419 -0.5650 H 0 0 0 0 0 0 0 0 0 0 0 0
6.2990 -0.7256 1.1523 H 0 0 0 0 0 0 0 0 0 0 0 0
5.9688 1.0256 0.7747 H 0 0 0 0 0 0 0 0 0 0 0 0
5.6464 -1.4324 -1.0654 H 0 0 0 0 0 0 0 0 0 0 0 0
5.3651 0.3385 -1.5304 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6212 0.4882 0.2702 H 0 0 0 0 0 0 0 0 0 0 0 0
3.6412 -2.4645 -0.2742 H 0 0 0 0 0 0 0 0 0 0 0 0
1.6355 -0.4988 1.0487 H 0 0 0 0 0 0 0 0 0 0 0 0
1.5938 -3.4775 0.6166 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.1148 -0.3349 1.8440 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.1711 -1.9727 3.1723 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.6423 -0.4995 2.8013 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.7752 -1.1082 -0.0837 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.2681 -2.3613 1.0625 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.5219 -1.1297 2.2763 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.9079 -1.0146 -0.4077 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0890 -2.8612 1.0885 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.5573 -0.0267 1.6487 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.0360 0.8080 1.9625 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.8475 0.5989 -0.8847 H 0 0 0 0 0 0 0 0 0 0 0 0
-9.9803 1.5372 0.1187 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.8868 2.6529 1.1142 H 0 0 0 0 0 0 0 0 0 0 0 0
-8.1834 3.6903 -2.9794 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.8730 2.1128 -4.0586 H 0 0 0 0 0 0 0 0 0 0 0 0
-4.9598 1.2305 -3.0409 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.9610 -0.9507 -1.9584 H 0 0 0 0 0 0 0 0 0 0 0 0
-7.4976 -0.2628 -2.6067 H 0 0 0 0 0 0 0 0 0 0 0 0
-6.1299 -0.5027 -3.6803 H 0 0 0 0 0 0 0 0 0 0 0 0
-5.0626 2.4986 -0.9614 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.1874 -0.1169 4.4823 H 0 0 0 0 0 0 0 0 0 0 0 0
-0.3451 1.5849 3.2823 H 0 0 0 0 0 0 0 0 0 0 0 0
-2.0149 2.2792 3.3927 H 0 0 0 0 0 0 0 0 0 0 0 0
-1.5259 1.3524 1.9423 H 0 0 0 0 0 0 0 0 0 0 0 0
-3.0481 0.4009 5.2703 H 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0
2 3 1 0
3 4 1 0
4 5 1 0
5 6 1 0
6 7 2 0
7 8 1 0
8 9 1 0
9 10 1 0
10 11 2 0
11 12 1 0
12 13 2 0
13 14 1 0
14 15 2 0
14 16 1 0
16 17 1 0
17 18 1 0
18 19 2 0
18 20 1 0
20 21 1 0
21 22 1 0
22 23 1 0
23 24 1 0
23 25 1 0
25 26 1 0
26 27 1 0
27 28 1 0
28 29 2 0
28 30 1 0
30 31 2 0
31 32 1 0
32 33 1 0
32 34 1 0
34 35 1 0
35 36 2 0
17 37 1 0
37 38 1 0
37 39 1 0
35 21 1 0
1 40 1 0
1 41 1 0
1 42 1 0
2 43 1 0
2 44 1 0
3 45 1 0
3 46 1 0
4 47 1 0
4 48 1 0
5 49 1 0
5 50 1 0
6 51 1 0
7 52 1 0
8 53 1 0
8 54 1 0
9 55 1 0
9 56 1 0
10 57 1 0
11 58 1 0
12 59 1 0
13 60 1 0
16 61 1 0
17 62 1 1
20 63 1 0
21 64 1 6
22 65 1 0
22 66 1 0
23 67 1 6
24 68 1 0
25 69 1 0
25 70 1 0
26 71 1 0
26 72 1 0
27 73 1 0
30 74 1 0
31 75 1 0
32 76 1 6
33 77 1 0
33 78 1 0
33 79 1 0
34 80 1 0
37 81 1 1
38 82 1 0
38 83 1 0
38 84 1 0
39 85 1 0
M END
PDB for NP0020408 (Glidobactin B)HEADER PROTEIN 04-JUL-21 NONE TITLE NULL COMPND NULL SOURCE NULL KEYWDS NULL EXPDTA NULL AUTHOR Marvin REVDAT 1 04-JUL-21 0 HETATM 1 C UNK 0 12.256 -2.054 -1.289 0.00 0.00 C+0 HETATM 2 C UNK 0 12.156 -0.932 -2.285 0.00 0.00 C+0 HETATM 3 C UNK 0 11.578 0.339 -1.734 0.00 0.00 C+0 HETATM 4 C UNK 0 10.187 0.120 -1.223 0.00 0.00 C+0 HETATM 5 C UNK 0 9.683 1.477 -0.709 0.00 0.00 C+0 HETATM 6 C UNK 0 8.295 1.323 -0.181 0.00 0.00 C+0 HETATM 7 C UNK 0 7.694 0.145 -0.185 0.00 0.00 C+0 HETATM 8 C UNK 0 6.308 0.076 0.358 0.00 0.00 C+0 HETATM 9 C UNK 0 5.353 -0.441 -0.726 0.00 0.00 C+0 HETATM 10 C UNK 0 4.011 -0.450 -0.076 0.00 0.00 C+0 HETATM 11 C UNK 0 3.271 -1.524 0.097 0.00 0.00 C+0 HETATM 12 C UNK 0 1.965 -1.482 0.737 0.00 0.00 C+0 HETATM 13 C UNK 0 1.194 -2.510 0.954 0.00 0.00 C+0 HETATM 14 C UNK 0 -0.131 -2.443 1.603 0.00 0.00 C+0 HETATM 15 O UNK 0 -0.733 -3.535 1.763 0.00 0.00 O+0 HETATM 16 N UNK 0 -0.655 -1.203 2.002 0.00 0.00 N+0 HETATM 17 C UNK 0 -1.948 -1.008 2.652 0.00 0.00 C+0 HETATM 18 C UNK 0 -2.962 -0.882 1.575 0.00 0.00 C+0 HETATM 19 O UNK 0 -2.540 -1.026 0.373 0.00 0.00 O+0 HETATM 20 N UNK 0 -4.328 -0.621 1.825 0.00 0.00 N+0 HETATM 21 C UNK 0 -5.312 -0.531 0.697 0.00 0.00 C+0 HETATM 22 C UNK 0 -6.482 -1.249 1.135 0.00 0.00 C+0 HETATM 23 C UNK 0 -7.854 -0.968 0.694 0.00 0.00 C+0 HETATM 24 O UNK 0 -8.685 -2.089 1.040 0.00 0.00 O+0 HETATM 25 C UNK 0 -8.565 0.220 1.186 0.00 0.00 C+0 HETATM 26 C UNK 0 -8.908 1.180 0.031 0.00 0.00 C+0 HETATM 27 N UNK 0 -8.122 2.375 0.099 0.00 0.00 N+0 HETATM 28 C UNK 0 -7.624 3.219 -0.889 0.00 0.00 C+0 HETATM 29 O UNK 0 -7.160 4.362 -0.475 0.00 0.00 O+0 HETATM 30 C UNK 0 -7.546 3.018 -2.319 0.00 0.00 C+0 HETATM 31 C UNK 0 -6.807 2.149 -2.941 0.00 0.00 C+0 HETATM 32 C UNK 0 -5.877 1.170 -2.317 0.00 0.00 C+0 HETATM 33 C UNK 0 -6.383 -0.208 -2.627 0.00 0.00 C+0 HETATM 34 N UNK 0 -5.450 1.463 -1.003 0.00 0.00 N+0 HETATM 35 C UNK 0 -5.375 0.835 0.214 0.00 0.00 C+0 HETATM 36 O UNK 0 -5.353 1.642 1.258 0.00 0.00 O+0 HETATM 37 C UNK 0 -1.918 0.096 3.640 0.00 0.00 C+0 HETATM 38 C UNK 0 -1.428 1.406 3.051 0.00 0.00 C+0 HETATM 39 O UNK 0 -3.116 0.345 4.289 0.00 0.00 O+0 HETATM 40 H UNK 0 13.335 -2.118 -0.965 0.00 0.00 H+0 HETATM 41 H UNK 0 11.613 -1.939 -0.420 0.00 0.00 H+0 HETATM 42 H UNK 0 12.064 -3.031 -1.818 0.00 0.00 H+0 HETATM 43 H UNK 0 11.517 -1.283 -3.142 0.00 0.00 H+0 HETATM 44 H UNK 0 13.178 -0.662 -2.662 0.00 0.00 H+0 HETATM 45 H UNK 0 11.521 1.104 -2.535 0.00 0.00 H+0 HETATM 46 H UNK 0 12.180 0.723 -0.870 0.00 0.00 H+0 HETATM 47 H UNK 0 10.187 -0.571 -0.339 0.00 0.00 H+0 HETATM 48 H UNK 0 9.540 -0.278 -2.017 0.00 0.00 H+0 HETATM 49 H UNK 0 10.319 1.723 0.181 0.00 0.00 H+0 HETATM 50 H UNK 0 9.736 2.227 -1.504 0.00 0.00 H+0 HETATM 51 H UNK 0 7.748 2.184 0.220 0.00 0.00 H+0 HETATM 52 H UNK 0 8.188 -0.742 -0.565 0.00 0.00 H+0 HETATM 53 H UNK 0 6.299 -0.726 1.152 0.00 0.00 H+0 HETATM 54 H UNK 0 5.969 1.026 0.775 0.00 0.00 H+0 HETATM 55 H UNK 0 5.646 -1.432 -1.065 0.00 0.00 H+0 HETATM 56 H UNK 0 5.365 0.339 -1.530 0.00 0.00 H+0 HETATM 57 H UNK 0 3.621 0.488 0.270 0.00 0.00 H+0 HETATM 58 H UNK 0 3.641 -2.465 -0.274 0.00 0.00 H+0 HETATM 59 H UNK 0 1.636 -0.499 1.049 0.00 0.00 H+0 HETATM 60 H UNK 0 1.594 -3.478 0.617 0.00 0.00 H+0 HETATM 61 H UNK 0 -0.115 -0.335 1.844 0.00 0.00 H+0 HETATM 62 H UNK 0 -2.171 -1.973 3.172 0.00 0.00 H+0 HETATM 63 H UNK 0 -4.642 -0.500 2.801 0.00 0.00 H+0 HETATM 64 H UNK 0 -4.775 -1.108 -0.084 0.00 0.00 H+0 HETATM 65 H UNK 0 -6.268 -2.361 1.063 0.00 0.00 H+0 HETATM 66 H UNK 0 -6.522 -1.130 2.276 0.00 0.00 H+0 HETATM 67 H UNK 0 -7.908 -1.015 -0.408 0.00 0.00 H+0 HETATM 68 H UNK 0 -8.089 -2.861 1.089 0.00 0.00 H+0 HETATM 69 H UNK 0 -9.557 -0.027 1.649 0.00 0.00 H+0 HETATM 70 H UNK 0 -8.036 0.808 1.962 0.00 0.00 H+0 HETATM 71 H UNK 0 -8.848 0.599 -0.885 0.00 0.00 H+0 HETATM 72 H UNK 0 -9.980 1.537 0.119 0.00 0.00 H+0 HETATM 73 H UNK 0 -7.887 2.653 1.114 0.00 0.00 H+0 HETATM 74 H UNK 0 -8.183 3.690 -2.979 0.00 0.00 H+0 HETATM 75 H UNK 0 -6.873 2.113 -4.059 0.00 0.00 H+0 HETATM 76 H UNK 0 -4.960 1.230 -3.041 0.00 0.00 H+0 HETATM 77 H UNK 0 -5.961 -0.951 -1.958 0.00 0.00 H+0 HETATM 78 H UNK 0 -7.498 -0.263 -2.607 0.00 0.00 H+0 HETATM 79 H UNK 0 -6.130 -0.503 -3.680 0.00 0.00 H+0 HETATM 80 H UNK 0 -5.063 2.499 -0.961 0.00 0.00 H+0 HETATM 81 H UNK 0 -1.187 -0.117 4.482 0.00 0.00 H+0 HETATM 82 H UNK 0 -0.345 1.585 3.282 0.00 0.00 H+0 HETATM 83 H UNK 0 -2.015 2.279 3.393 0.00 0.00 H+0 HETATM 84 H UNK 0 -1.526 1.352 1.942 0.00 0.00 H+0 HETATM 85 H UNK 0 -3.048 0.401 5.270 0.00 0.00 H+0 CONECT 1 2 40 41 42 CONECT 2 1 3 43 44 CONECT 3 2 4 45 46 CONECT 4 3 5 47 48 CONECT 5 4 6 49 50 CONECT 6 5 7 51 CONECT 7 6 8 52 CONECT 8 7 9 53 54 CONECT 9 8 10 55 56 CONECT 10 9 11 57 CONECT 11 10 12 58 CONECT 12 11 13 59 CONECT 13 12 14 60 CONECT 14 13 15 16 CONECT 15 14 CONECT 16 14 17 61 CONECT 17 16 18 37 62 CONECT 18 17 19 20 CONECT 19 18 CONECT 20 18 21 63 CONECT 21 20 22 35 64 CONECT 22 21 23 65 66 CONECT 23 22 24 25 67 CONECT 24 23 68 CONECT 25 23 26 69 70 CONECT 26 25 27 71 72 CONECT 27 26 28 73 CONECT 28 27 29 30 CONECT 29 28 CONECT 30 28 31 74 CONECT 31 30 32 75 CONECT 32 31 33 34 76 CONECT 33 32 77 78 79 CONECT 34 32 35 80 CONECT 35 34 36 21 CONECT 36 35 CONECT 37 17 38 39 81 CONECT 38 37 82 83 84 CONECT 39 37 85 CONECT 40 1 CONECT 41 1 CONECT 42 1 CONECT 43 2 CONECT 44 2 CONECT 45 3 CONECT 46 3 CONECT 47 4 CONECT 48 4 CONECT 49 5 CONECT 50 5 CONECT 51 6 CONECT 52 7 CONECT 53 8 CONECT 54 8 CONECT 55 9 CONECT 56 9 CONECT 57 10 CONECT 58 11 CONECT 59 12 CONECT 60 13 CONECT 61 16 CONECT 62 17 CONECT 63 20 CONECT 64 21 CONECT 65 22 CONECT 66 22 CONECT 67 23 CONECT 68 24 CONECT 69 25 CONECT 70 25 CONECT 71 26 CONECT 72 26 CONECT 73 27 CONECT 74 30 CONECT 75 31 CONECT 76 32 CONECT 77 33 CONECT 78 33 CONECT 79 33 CONECT 80 34 CONECT 81 37 CONECT 82 38 CONECT 83 38 CONECT 84 38 CONECT 85 39 MASTER 0 0 0 0 0 0 0 0 85 0 170 0 END SMILES for NP0020408 (Glidobactin B)[H]O[C@]([H])(C([H])([H])[H])[C@]([H])(N([H])C(=O)C(\[H])=C(/[H])\C(\[H])=C(/[H])C([H])([H])C([H])([H])C(\[H])=C(/[H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[H])C(=O)N([H])[C@]1([H])C(=O)N([H])[C@]([H])(\C([H])=C([H])/C(=O)N([H])C([H])([H])C([H])([H])[C@]([H])(O[H])C1([H])[H])C([H])([H])[H] INCHI for NP0020408 (Glidobactin B)InChI=1S/C29H46N4O6/c1-4-5-6-7-8-9-10-11-12-13-14-15-26(37)33-27(22(3)34)29(39)32-24-20-23(35)18-19-30-25(36)17-16-21(2)31-28(24)38/h8-9,12-17,21-24,27,34-35H,4-7,10-11,18-20H2,1-3H3,(H,30,36)(H,31,38)(H,32,39)(H,33,37)/b9-8+,13-12+,15-14+,17-16-/t21-,22+,23-,24-,27-/m0/s1 3D Structure for NP0020408 (Glidobactin B) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Synonyms |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemical Formula | C29H46N4O6 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Average Mass | 546.7090 Da | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Monoisotopic Mass | 546.34174 Da | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IUPAC Name | (2E,4E,8E)-N-[(1S,2R)-2-hydroxy-1-{[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]carbamoyl}propyl]tetradeca-2,4,8-trienamide | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Traditional Name | (2E,4E,8E)-N-[(1S,2R)-2-hydroxy-1-{[(3Z,5S,8S,10S)-10-hydroxy-5-methyl-2,7-dioxo-1,6-diazacyclododec-3-en-8-yl]carbamoyl}propyl]tetradeca-2,4,8-trienamide | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| CAS Registry Number | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SMILES | CCCCC\C=C\CC\C=C\C=C\C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@H]1C[C@@H](O)CCNC(=O)\C=C/[C@H](C)NC1=O | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| InChI Identifier | InChI=1S/C29H46N4O6/c1-4-5-6-7-8-9-10-11-12-13-14-15-26(37)33-27(22(3)34)29(39)32-24-20-23(35)18-19-30-25(36)17-16-21(2)31-28(24)38/h8-9,12-17,21-24,27,34-35H,4-7,10-11,18-20H2,1-3H3,(H,30,36)(H,31,38)(H,32,39)(H,33,37)/b9-8+,13-12+,15-14+,17-16-/t21-,22+,23-,24-,27-/m0/s1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| InChI Key | AZHZGGIJCMPFMJ-AECIEKQISA-N | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Spectra | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Predicted Spectra | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemical Shift Submissions | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Species | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Species of Origin |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Species Where Detected |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemical Taxonomy | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Classification | Not classified | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Physical Properties | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| State | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Properties |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Predicted Properties |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| External Links | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NPAtlas ID | NPA020766 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HMDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| DrugBank ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Phenol Explorer Compound ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| FoodDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KNApSAcK ID | C00017618 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Chemspider ID | 4946205 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KEGG Compound ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BioCyc ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BiGG ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Wikipedia Link | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| METLIN ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PubChem Compound | 6442107 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ChEBI ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Good Scents ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| References | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| General References | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
