NP-MRD: Showing NP-Card for Pamamycin-607 (NP0020374)

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Record Information

Version

2.0

Created at

2021-01-06 05:48:29 UTC

Updated at

2021-07-15 17:33:29 UTC

NP-MRD ID

NP0020374

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pamamycin-607

Provided By

NPAtlas

Description

Pamamycin-607 is found in Streptomyces, Streptomyces alboniger and Streptomyces alboniger IFO 12738. Pamamycin-607 was first documented in 1988 (PMID: 3141335). Based on a literature review very few articles have been published on 5-(1-{5-[2-(dimethylamino)pentyl]oxolan-2-yl}ethyl)-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]Icosane-3,12-dione.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042107513D          

104107  0  0  0  0            999 V2000
   -8.2992    0.5785   -2.0161 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7289    0.2839   -0.5954 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.7822   -0.6551    0.1005 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.3738   -0.1227    0.1951 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.3389    1.1982    0.9787 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0258    1.8263    0.9870 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9107    3.2877    0.7309 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3964    3.4212    1.0105 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1049    2.3311    2.0175 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3653    1.7245    2.2246 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1057    1.3098    1.5313 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7962    0.3947    2.6958 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8213    1.8894    1.0765 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4562    2.9228    1.6872 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0857    1.3593    0.0812 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4241    0.0023   -0.0298 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9134    0.1909    0.1882 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5415    1.0887   -0.8561 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7173   -0.9981    0.5158 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8225   -2.1332   -0.3882 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2206   -1.9642   -0.9738 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9311   -1.3575    0.2381 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1281   -0.6045   -0.2715 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9416    0.0231    0.8018 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2057    1.0175    1.6240 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.0587    1.6182    2.7143 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.2521    2.3693    2.2131 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1336    0.6235    0.1889 N   0  0  1  0  0  0  0  0  0  0  0  0
    8.9436   -0.4713   -0.3768 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7243    1.4592   -0.9481 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9996   -0.5545    0.8441 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0224   -0.4922   -1.3547 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8368    0.5781   -2.0726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7110   -1.7439   -1.5273 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6591   -2.8058   -0.4774 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0569   -3.4504   -0.6990 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7544   -2.1534   -0.9029 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0388   -1.5822   -1.9386 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2047   -2.1052   -1.0106 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6160   -3.2210   -1.9728 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0273   -2.2190    0.1724 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2175   -3.3947    0.6486 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5922   -1.1081    0.7763 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5463   -0.1557   -2.3454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9236    1.6218   -2.0549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1550    0.5200   -2.7253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7042   -0.2424   -0.6691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9204    1.2115   -0.0158 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.7451   -1.5909   -0.4922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0764    0.1540   -0.8447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1093    1.8882    0.6319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6390    0.9148    2.0291 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.4999    3.8592    1.4516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1894    4.4367    1.3956 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8521    3.2679    0.0443 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7750    2.7985    2.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5656    0.6848    0.7176 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8136    0.6739    3.1237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5323    0.5224    3.5280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7768   -0.6724    2.3761 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1154   -0.5920    0.8420 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0167    0.8418    1.1379 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9729    2.0099   -0.9721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7748    0.5696   -1.7973 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5427    1.3959   -0.4354 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3221   -1.3994    1.5124 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9132   -3.1017    0.2023 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0774   -2.3374   -1.1328 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6876   -2.9418   -1.2072 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2598   -1.3424   -1.8628 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3045   -2.1853    0.8654 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7889   -1.3266   -0.8408 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8041    0.1596   -1.0175 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3548   -0.7818    1.4736 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8022    1.8339    0.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3384    0.5670    2.1762 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4142    0.8002    3.4115 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4533    2.3091    3.3568 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1045    1.6789    1.9907 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6039    3.0935    3.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9992    3.0337    1.3690 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.9880   -0.1187   -0.3536 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7775   -1.3514    0.2715 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6831   -0.6466   -1.4345 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9476    2.1719   -0.6640 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6393    2.0812   -1.1749 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5211    0.8557   -1.8475 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9504   -0.5054   -2.0017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5214    1.0879   -1.3974 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2032    1.3364   -2.5635 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4445    0.1187   -2.8786 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2749   -2.2730   -2.4431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5484   -2.4820    0.5500 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0701   -3.6168   -0.6697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3354   -3.9727    0.2289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9730   -4.0966   -1.5773 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4694   -1.5366   -0.0048 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4553   -1.0993   -1.4718 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.2245   -2.7722   -2.8137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7501   -3.6897   -2.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
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 16 32  1  0  0  0  0
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 43  4  1  0  0  0  0
 10  6  1  0  0  0  0
 31 19  1  0  0  0  0
 38 34  1  0  0  0  0
  1 44  1  0  0  0  0
  1 45  1  0  0  0  0
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  2 47  1  0  0  0  0
  2 48  1  0  0  0  0
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M  END

     RDKit          3D

104107  0  0  0  0  0  0  0  0999 V2000
   -8.2992    0.5785   -2.0161 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7289    0.2839   -0.5954 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7822   -0.6551    0.1005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3738   -0.1227    0.1951 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.3389    1.1982    0.9787 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0258    1.8263    0.9870 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9107    3.2877    0.7309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3964    3.4212    1.0105 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1049    2.3311    2.0175 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3653    1.7245    2.2246 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1057    1.3098    1.5313 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.6591   -2.8058   -0.4774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0569   -3.4504   -0.6990 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7544   -2.1534   -0.9029 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652307042107513D          

104107  0  0  0  0            999 V2000
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 40104  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0020374

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C([H])([H])N(C([H])([H])[H])[C@@]([H])(C([H])([H])C([H])([H])C([H])([H])[H])C([H])([H])[C@@]1([H])O[C@]([H])(C([H])([H])C1([H])[H])[C@@]([H])(C([H])([H])[H])[C@@]1([H])OC(=O)[C@@]([H])(C([H])([H])[H])[C@]2([H])O[C@]([H])(C([H])([H])C2([H])[H])C([H])([H])[C@@]([H])(OC(=O)[C@]([H])(C([H])([H])[H])[C@]2([H])O[C@]([H])(C([H])([H])C2([H])[H])[C@@]1([H])C([H])([H])[H])C([H])([H])C([H])([H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C35H61NO7/c1-9-11-25(36(7)8)19-27-13-15-29(39-27)21(3)33-22(4)30-17-18-32(42-30)24(6)34(37)41-26(12-10-2)20-28-14-16-31(40-28)23(5)35(38)43-33/h21-33H,9-20H2,1-8H3/t21-,22-,23+,24-,25+,26+,27+,28-,29-,30-,31-,32-,33-/m1/s1

> <INCHI_KEY>
AHOIPAFUOXGGQB-UHFFFAOYSA-N

> <FORMULA>
C35H61NO7

> <MOLECULAR_WEIGHT>
607.873

> <EXACT_MASS>
607.444803308

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
104

> <JCHEM_AVERAGE_POLARIZABILITY>
71.13308151475621

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,5R,6R,7R,10R,11R,14S,16R)-5-[(1R)-1-[(2R,5S)-5-[(2S)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

> <ALOGPS_LOGP>
5.75

> <JCHEM_LOGP>
6.287050889333333

> <ALOGPS_LOGS>
-5.99

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
10.00091040414133

> <JCHEM_POLAR_SURFACE_AREA>
83.53000000000002

> <JCHEM_REFRACTIVITY>
167.10119999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.23e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,5R,6R,7R,10R,11R,14S,16R)-5-[(1R)-1-[(2R,5S)-5-[(2S)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

104107  0  0  0  0  0  0  0  0999 V2000
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 20 71  1  0
 21 72  1  0
 21 73  1  0
 22 74  1  1
 23 75  1  0
 23 76  1  0
 24 77  1  1
 25 78  1  0
 25 79  1  0
 26 80  1  0
 26 81  1  0
 27 82  1  0
 27 83  1  0
 27 84  1  0
 29 85  1  0
 29 86  1  0
 29 87  1  0
 30 88  1  0
 30 89  1  0
 30 90  1  0
 32 91  1  6
 33 92  1  0
 33 93  1  0
 33 94  1  0
 34 95  1  6
 35 96  1  0
 35 97  1  0
 36 98  1  0
 36 99  1  0
 37100  1  1
 39101  1  6
 40102  1  0
 40103  1  0
 40104  1  0
M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0      -8.299   0.579  -2.016  0.00  0.00           C+0
HETATM    2  C   UNK     0      -8.729   0.284  -0.595  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.782  -0.655   0.101  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.374  -0.123   0.195  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.339   1.198   0.979  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.026   1.826   0.987  0.00  0.00           C+0
HETATM    7  C   UNK     0      -4.911   3.288   0.731  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.396   3.421   1.010  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.105   2.331   2.018  0.00  0.00           C+0
HETATM   10  O   UNK     0      -4.365   1.724   2.225  0.00  0.00           O+0
HETATM   11  C   UNK     0      -2.106   1.310   1.531  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.796   0.395   2.696  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.821   1.889   1.077  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.456   2.923   1.687  0.00  0.00           O+0
HETATM   15  O   UNK     0      -0.086   1.359   0.081  0.00  0.00           O+0
HETATM   16  C   UNK     0       0.424   0.002  -0.030  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.913   0.191   0.188  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.542   1.089  -0.856  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.717  -0.998   0.516  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.822  -2.133  -0.388  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.221  -1.964  -0.974  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.931  -1.357   0.238  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.128  -0.605  -0.272  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.942   0.023   0.802  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.206   1.018   1.624  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.059   1.618   2.714  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.252   2.369   2.213  0.00  0.00           C+0
HETATM   28  N   UNK     0       8.134   0.624   0.189  0.00  0.00           N+0
HETATM   29  C   UNK     0       8.944  -0.471  -0.377  0.00  0.00           C+0
HETATM   30  C   UNK     0       7.724   1.459  -0.948  0.00  0.00           C+0
HETATM   31  O   UNK     0       4.000  -0.555   0.844  0.00  0.00           O+0
HETATM   32  C   UNK     0       0.022  -0.492  -1.355  0.00  0.00           C+0
HETATM   33  C   UNK     0      -0.837   0.578  -2.073  0.00  0.00           C+0
HETATM   34  C   UNK     0      -0.711  -1.744  -1.527  0.00  0.00           C+0
HETATM   35  C   UNK     0      -0.659  -2.806  -0.477  0.00  0.00           C+0
HETATM   36  C   UNK     0      -2.057  -3.450  -0.699  0.00  0.00           C+0
HETATM   37  C   UNK     0      -2.754  -2.153  -0.903  0.00  0.00           C+0
HETATM   38  O   UNK     0      -2.039  -1.582  -1.939  0.00  0.00           O+0
HETATM   39  C   UNK     0      -4.205  -2.105  -1.011  0.00  0.00           C+0
HETATM   40  C   UNK     0      -4.616  -3.221  -1.973  0.00  0.00           C+0
HETATM   41  C   UNK     0      -5.027  -2.219   0.172  0.00  0.00           C+0
HETATM   42  O   UNK     0      -5.218  -3.395   0.649  0.00  0.00           O+0
HETATM   43  O   UNK     0      -5.592  -1.108   0.776  0.00  0.00           O+0
HETATM   44  H   UNK     0      -7.546  -0.156  -2.345  0.00  0.00           H+0
HETATM   45  H   UNK     0      -7.924   1.622  -2.055  0.00  0.00           H+0
HETATM   46  H   UNK     0      -9.155   0.520  -2.725  0.00  0.00           H+0
HETATM   47  H   UNK     0      -9.704  -0.242  -0.669  0.00  0.00           H+0
HETATM   48  H   UNK     0      -8.920   1.212  -0.016  0.00  0.00           H+0
HETATM   49  H   UNK     0      -8.185  -0.885   1.088  0.00  0.00           H+0
HETATM   50  H   UNK     0      -7.745  -1.591  -0.492  0.00  0.00           H+0
HETATM   51  H   UNK     0      -6.076   0.154  -0.845  0.00  0.00           H+0
HETATM   52  H   UNK     0      -7.109   1.888   0.632  0.00  0.00           H+0
HETATM   53  H   UNK     0      -6.639   0.915   2.029  0.00  0.00           H+0
HETATM   54  H   UNK     0      -4.400   1.323   0.209  0.00  0.00           H+0
HETATM   55  H   UNK     0      -5.119   3.561  -0.336  0.00  0.00           H+0
HETATM   56  H   UNK     0      -5.500   3.859   1.452  0.00  0.00           H+0
HETATM   57  H   UNK     0      -3.189   4.437   1.396  0.00  0.00           H+0
HETATM   58  H   UNK     0      -2.852   3.268   0.044  0.00  0.00           H+0
HETATM   59  H   UNK     0      -2.775   2.799   2.961  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.566   0.685   0.718  0.00  0.00           H+0
HETATM   61  H   UNK     0      -0.814   0.674   3.124  0.00  0.00           H+0
HETATM   62  H   UNK     0      -2.532   0.522   3.528  0.00  0.00           H+0
HETATM   63  H   UNK     0      -1.777  -0.672   2.376  0.00  0.00           H+0
HETATM   64  H   UNK     0       0.115  -0.592   0.842  0.00  0.00           H+0
HETATM   65  H   UNK     0       2.017   0.842   1.138  0.00  0.00           H+0
HETATM   66  H   UNK     0       1.973   2.010  -0.972  0.00  0.00           H+0
HETATM   67  H   UNK     0       2.775   0.570  -1.797  0.00  0.00           H+0
HETATM   68  H   UNK     0       3.543   1.396  -0.435  0.00  0.00           H+0
HETATM   69  H   UNK     0       2.322  -1.399   1.512  0.00  0.00           H+0
HETATM   70  H   UNK     0       2.913  -3.102   0.202  0.00  0.00           H+0
HETATM   71  H   UNK     0       2.077  -2.337  -1.133  0.00  0.00           H+0
HETATM   72  H   UNK     0       4.688  -2.942  -1.207  0.00  0.00           H+0
HETATM   73  H   UNK     0       4.260  -1.342  -1.863  0.00  0.00           H+0
HETATM   74  H   UNK     0       5.305  -2.185   0.865  0.00  0.00           H+0
HETATM   75  H   UNK     0       6.789  -1.327  -0.841  0.00  0.00           H+0
HETATM   76  H   UNK     0       5.804   0.160  -1.018  0.00  0.00           H+0
HETATM   77  H   UNK     0       7.355  -0.782   1.474  0.00  0.00           H+0
HETATM   78  H   UNK     0       5.802   1.834   0.958  0.00  0.00           H+0
HETATM   79  H   UNK     0       5.338   0.567   2.176  0.00  0.00           H+0
HETATM   80  H   UNK     0       7.414   0.800   3.412  0.00  0.00           H+0
HETATM   81  H   UNK     0       6.453   2.309   3.357  0.00  0.00           H+0
HETATM   82  H   UNK     0       9.104   1.679   1.991  0.00  0.00           H+0
HETATM   83  H   UNK     0       8.604   3.094   3.020  0.00  0.00           H+0
HETATM   84  H   UNK     0       7.999   3.034   1.369  0.00  0.00           H+0
HETATM   85  H   UNK     0       9.988  -0.119  -0.354  0.00  0.00           H+0
HETATM   86  H   UNK     0       8.777  -1.351   0.272  0.00  0.00           H+0
HETATM   87  H   UNK     0       8.683  -0.647  -1.435  0.00  0.00           H+0
HETATM   88  H   UNK     0       6.948   2.172  -0.664  0.00  0.00           H+0
HETATM   89  H   UNK     0       8.639   2.081  -1.175  0.00  0.00           H+0
HETATM   90  H   UNK     0       7.521   0.856  -1.847  0.00  0.00           H+0
HETATM   91  H   UNK     0       0.950  -0.505  -2.002  0.00  0.00           H+0
HETATM   92  H   UNK     0      -1.521   1.088  -1.397  0.00  0.00           H+0
HETATM   93  H   UNK     0      -0.203   1.336  -2.563  0.00  0.00           H+0
HETATM   94  H   UNK     0      -1.444   0.119  -2.879  0.00  0.00           H+0
HETATM   95  H   UNK     0      -0.275  -2.273  -2.443  0.00  0.00           H+0
HETATM   96  H   UNK     0      -0.548  -2.482   0.550  0.00  0.00           H+0
HETATM   97  H   UNK     0       0.070  -3.617  -0.670  0.00  0.00           H+0
HETATM   98  H   UNK     0      -2.335  -3.973   0.229  0.00  0.00           H+0
HETATM   99  H   UNK     0      -1.973  -4.097  -1.577  0.00  0.00           H+0
HETATM  100  H   UNK     0      -2.469  -1.537  -0.005  0.00  0.00           H+0
HETATM  101  H   UNK     0      -4.455  -1.099  -1.472  0.00  0.00           H+0
HETATM  102  H   UNK     0      -5.175  -4.028  -1.466  0.00  0.00           H+0
HETATM  103  H   UNK     0      -5.224  -2.772  -2.814  0.00  0.00           H+0
HETATM  104  H   UNK     0      -3.750  -3.690  -2.479  0.00  0.00           H+0
CONECT    1    2   44   45   46                                             
CONECT    2    1    3   47   48                                             
CONECT    3    2    4   49   50                                             
CONECT    4    3    5   43   51                                             
CONECT    5    4    6   52   53                                             
CONECT    6    5    7   10   54                                             
CONECT    7    6    8   55   56                                             
CONECT    8    7    9   57   58                                             
CONECT    9    8   10   11   59                                             
CONECT   10    9    6                                                       
CONECT   11    9   12   13   60                                             
CONECT   12   11   61   62   63                                             
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17   32   64                                             
CONECT   17   16   18   19   65                                             
CONECT   18   17   66   67   68                                             
CONECT   19   17   20   31   69                                             
CONECT   20   19   21   70   71                                             
CONECT   21   20   22   72   73                                             
CONECT   22   21   23   31   74                                             
CONECT   23   22   24   75   76                                             
CONECT   24   23   25   28   77                                             
CONECT   25   24   26   78   79                                             
CONECT   26   25   27   80   81                                             
CONECT   27   26   82   83   84                                             
CONECT   28   24   29   30                                                  
CONECT   29   28   85   86   87                                             
CONECT   30   28   88   89   90                                             
CONECT   31   22   19                                                       
CONECT   32   16   33   34   91                                             
CONECT   33   32   92   93   94                                             
CONECT   34   32   35   38   95                                             
CONECT   35   34   36   96   97                                             
CONECT   36   35   37   98   99                                             
CONECT   37   36   38   39  100                                             
CONECT   38   37   34                                                       
CONECT   39   37   40   41  101                                             
CONECT   40   39  102  103  104                                             
CONECT   41   39   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41    4                                                       
CONECT   44    1                                                            
CONECT   45    1                                                            
CONECT   46    1                                                            
CONECT   47    2                                                            
CONECT   48    2                                                            
CONECT   49    3                                                            
CONECT   50    3                                                            
CONECT   51    4                                                            
CONECT   52    5                                                            
CONECT   53    5                                                            
CONECT   54    6                                                            
CONECT   55    7                                                            
CONECT   56    7                                                            
CONECT   57    8                                                            
CONECT   58    8                                                            
CONECT   59    9                                                            
CONECT   60   11                                                            
CONECT   61   12                                                            
CONECT   62   12                                                            
CONECT   63   12                                                            
CONECT   64   16                                                            
CONECT   65   17                                                            
CONECT   66   18                                                            
CONECT   67   18                                                            
CONECT   68   18                                                            
CONECT   69   19                                                            
CONECT   70   20                                                            
CONECT   71   20                                                            
CONECT   72   21                                                            
CONECT   73   21                                                            
CONECT   74   22                                                            
CONECT   75   23                                                            
CONECT   76   23                                                            
CONECT   77   24                                                            
CONECT   78   25                                                            
CONECT   79   25                                                            
CONECT   80   26                                                            
CONECT   81   26                                                            
CONECT   82   27                                                            
CONECT   83   27                                                            
CONECT   84   27                                                            
CONECT   85   29                                                            
CONECT   86   29                                                            
CONECT   87   29                                                            
CONECT   88   30                                                            
CONECT   89   30                                                            
CONECT   90   30                                                            
CONECT   91   32                                                            
CONECT   92   33                                                            
CONECT   93   33                                                            
CONECT   94   33                                                            
CONECT   95   34                                                            
CONECT   96   35                                                            
CONECT   97   35                                                            
CONECT   98   36                                                            
CONECT   99   36                                                            
CONECT  100   37                                                            
CONECT  101   39                                                            
CONECT  102   40                                                            
CONECT  103   40                                                            
CONECT  104   40                                                            
MASTER        0    0    0    0    0    0    0    0  104    0  214    0
END

RDKit          3D

104107  0  0  0  0  0  0  0  0999 V2000
   -8.2992    0.5785   -2.0161 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7289    0.2839   -0.5954 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7822   -0.6551    0.1005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3738   -0.1227    0.1951 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.3389    1.1982    0.9787 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0258    1.8263    0.9870 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9107    3.2877    0.7309 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3964    3.4212    1.0105 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1049    2.3311    2.0175 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.3653    1.7245    2.2246 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1057    1.3098    1.5313 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7962    0.3947    2.6958 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8213    1.8894    1.0765 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4562    2.9228    1.6872 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0857    1.3593    0.0812 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4241    0.0023   -0.0298 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9134    0.1909    0.1882 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5415    1.0887   -0.8561 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7173   -0.9981    0.5158 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8225   -2.1332   -0.3882 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2206   -1.9642   -0.9738 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9311   -1.3575    0.2381 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1281   -0.6045   -0.2715 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9416    0.0231    0.8018 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2057    1.0175    1.6240 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0587    1.6182    2.7143 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2521    2.3693    2.2131 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1336    0.6235    0.1889 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.9436   -0.4713   -0.3768 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7243    1.4592   -0.9481 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9996   -0.5545    0.8441 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0224   -0.4922   -1.3547 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8368    0.5781   -2.0726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7110   -1.7439   -1.5273 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6591   -2.8058   -0.4774 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0569   -3.4504   -0.6990 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7544   -2.1534   -0.9029 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0388   -1.5822   -1.9386 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2047   -2.1052   -1.0106 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6160   -3.2210   -1.9728 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0273   -2.2190    0.1724 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2175   -3.3947    0.6486 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5922   -1.1081    0.7763 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5463   -0.1557   -2.3454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9236    1.6218   -2.0549 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1550    0.5200   -2.7253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7042   -0.2424   -0.6691 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Panamycin-607	MeSH

Chemical Formula

C₃₅H₆₁NO₇

Average Mass

607.8730 Da

Monoisotopic Mass

607.44480 Da

IUPAC Name

(1R,2S,5R,6R,7R,10R,11R,14S,16R)-5-[(1R)-1-[(2R,5S)-5-[(2S)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

Traditional Name

(1R,2S,5R,6R,7R,10R,11R,14S,16R)-5-[(1R)-1-[(2R,5S)-5-[(2S)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

CAS Registry Number

Not Available

SMILES

CCCC(CC1CCC(O1)C(C)C1OC(=O)C(C)C2CCC(CC(CCC)OC(=O)C(C)C3CCC(O3)C1C)O2)N(C)C

InChI Identifier

InChI=1S/C35H61NO7/c1-9-11-25(36(7)8)19-27-13-15-29(39-27)21(3)33-22(4)30-17-18-32(42-30)24(6)34(37)41-26(12-10-2)20-28-14-16-31(40-28)23(5)35(38)43-33/h21-33H,9-20H2,1-8H3

InChI Key

AHOIPAFUOXGGQB-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	3141335
Streptomyces alboniger	LOTUS Database	35616633
Streptomyces alboniger IFO 12738	Bacteria	KNApSAcK

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.75	ALOGPS
logP	6.29	ChemAxon
logS	-6	ALOGPS
pKa (Strongest Basic)	10	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	83.53 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	167.1 m³·mol⁻¹	ChemAxon
Polarizability	71.13 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA003559

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28283182

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13922364

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kondo S, Yasui K, Natsume M, Katayama M, Marumo S: Isolation, physico-chemical properties and biological activity of pamamycin-607, an aerial mycelium-inducing substance from Streptomyces alboniger. J Antibiot (Tokyo). 1988 Sep;41(9):1196-204. doi: 10.7164/antibiotics.41.1196. [PubMed:3141335 ]

Showing NP-Card for Pamamycin-607 (NP0020374)

MOL for NP0020374 (Pamamycin-607)

3D MOL for NP0020374 (Pamamycin-607)

3D SDF for NP0020374 (Pamamycin-607)

3D-SDF for NP0020374 (Pamamycin-607)

PDB for NP0020374 (Pamamycin-607)

3D PDB for NP0020374 (Pamamycin-607)

SMILES for NP0020374 (Pamamycin-607)

INCHI for NP0020374 (Pamamycin-607)

Structure for NP0020374 (Pamamycin-607)

3D Structure for NP0020374 (Pamamycin-607)