NP-MRD: Showing NP-Card for Aphidicolin A13 (NP0020278)

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Record Information

Version

2.0

Created at

2021-01-06 05:44:10 UTC

Updated at

2021-07-15 17:33:14 UTC

NP-MRD ID

NP0020278

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Aphidicolin A13

Provided By

NPAtlas

Description

Aphidicolin A13 is found in Botryotinia. Based on a literature review very few articles have been published on Aphidicolin A13.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242120283D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242120283D          

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   -4.2659    0.2120    1.0826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3595   -1.9866    1.1839 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6209   -2.5565    0.9974 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6931   -0.9820   -1.0018 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1961   -2.3069   -1.1158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7554   -0.7714   -2.1254 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3388   -0.4922   -1.7460 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2087    0.4857   -0.6079 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9541    1.7103   -0.9828 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4921    2.4209   -2.0640 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3599   -2.4479    0.0344 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9118   -2.7316   -1.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8402   -3.2658   -0.3914 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7049    0.0984    1.5076 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8663    1.2272    0.6747 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4302    0.0205   -2.4239 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8170   -1.5456   -0.0454 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1647   -1.0660   -1.6155 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4532   -1.5019   -0.0443 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2012   -0.5110    1.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7344    2.4437   -1.4842 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3564    0.8748   -2.1001 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8113    2.6120   -0.6572 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1201    1.1967    1.8508 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9743    2.8970    1.4125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0966    2.6946    0.4610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5755    2.1558    2.7836 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1083    0.5290    2.6388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6232    1.6188    1.7284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1952    0.1744    2.6608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2135   -0.9502    0.9399 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3254    1.2172    0.6856 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1727    0.1280    2.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2554   -0.2789    0.8381 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5362   -2.6746    0.9511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3189   -1.6801    2.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2565   -2.2979    1.7162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6192   -0.3676   -1.2293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4492   -2.5009   -2.0426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7143   -1.6631   -2.8246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0833    0.0569   -2.8240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8401    0.0046   -2.6310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8255   -1.4407   -1.6141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9939    1.3849   -1.2894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1621    2.3873   -0.0999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6767    3.3877   -1.8825 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 18 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  6  0  0  0
 27 28  1  0  0  0  0
 12  6  1  0  0  0  0
 26 17  1  0  0  0  0
 14 10  1  0  0  0  0
 26 10  1  0  0  0  0
  1 29  1  0  0  0  0
  1 30  1  0  0  0  0
  1 31  1  0  0  0  0
  5 32  1  0  0  0  0
  5 33  1  0  0  0  0
  7 34  1  0  0  0  0
  8 35  1  0  0  0  0
  8 36  1  0  0  0  0
  9 37  1  0  0  0  0
  9 38  1  0  0  0  0
 11 39  1  0  0  0  0
 11 40  1  0  0  0  0
 12 41  1  6  0  0  0
 13 42  1  0  0  0  0
 13 43  1  0  0  0  0
 14 44  1  6  0  0  0
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 15 46  1  0  0  0  0
 16 47  1  0  0  0  0
 16 48  1  0  0  0  0
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 19 50  1  0  0  0  0
 19 51  1  0  0  0  0
 19 52  1  0  0  0  0
 20 53  1  0  0  0  0
 20 54  1  0  0  0  0
 21 55  1  0  0  0  0
 22 56  1  6  0  0  0
 23 57  1  0  0  0  0
 24 58  1  0  0  0  0
 24 59  1  0  0  0  0
 25 60  1  0  0  0  0
 25 61  1  0  0  0  0
 27 62  1  0  0  0  0
 27 63  1  0  0  0  0
 28 64  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0020278

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC([H])([H])[C@]1(C([H])([H])[H])[C@]([H])(O[H])C([H])([H])C([H])([H])[C@@]2(C([H])([H])O[H])[C@@]1([H])C([H])([H])C([H])([H])[C@@]1([H])C([H])([H])[C@]3([H])C([H])([H])[C@]21C([H])([H])C([H])([H])[C@]3(O[H])C([H])([H])OC(=O)C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C22H36O6/c1-14(25)28-13-22(27)8-7-20-10-16(22)9-15(20)3-4-17-19(2,11-23)18(26)5-6-21(17,20)12-24/h15-18,23-24,26-27H,3-13H2,1-2H3/t15-,16+,17-,18+,19-,20-,21+,22-/m0/s1

> <INCHI_KEY>
JVAKWTVGVJCPDU-CDKGFNLYSA-N

> <FORMULA>
C22H36O6

> <MOLECULAR_WEIGHT>
396.524

> <EXACT_MASS>
396.251188879

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
43.289724917159745

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(1S,2R,5R,6R,7R,10S,12R,13R)-5,13-dihydroxy-2,6-bis(hydroxymethyl)-6-methyltetracyclo[10.3.1.0^{1,10}.0^{2,7}]hexadecan-13-yl]methyl acetate

> <ALOGPS_LOGP>
0.68

> <JCHEM_LOGP>
0.2504388146666682

> <ALOGPS_LOGS>
-3.19

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.548541276149926

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.69297404391574

> <JCHEM_PKA_STRONGEST_BASIC>
-0.7056920596875614

> <JCHEM_POLAR_SURFACE_AREA>
107.22000000000001

> <JCHEM_REFRACTIVITY>
103.31109999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.53e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(1S,2R,5R,6R,7R,10S,12R,13R)-5,13-dihydroxy-2,6-bis(hydroxymethyl)-6-methyltetracyclo[10.3.1.0^{1,10}.0^{2,7}]hexadecan-13-yl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 64 67  0  0  0  0  0  0  0  0999 V2000
    6.5599   -2.5023   -0.7309 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8487   -1.1646   -0.6997 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0518   -0.3441   -1.6178 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9961   -0.8295    0.2969 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2381    0.3110    0.5246 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1884    0.5082   -0.4986 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7995    0.6435   -1.7662 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3020   -0.7093   -0.5608 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9689   -0.5354    0.1319 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2118    0.6861   -0.2445 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0653    1.4472   -1.2199 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2904    1.6979   -0.3012 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7307    1.8422    1.0801 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2326    1.7297    0.8919 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4897    1.2836    2.1029 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8840    0.8280    1.7916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9087   -0.1295    0.5888 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2380   -0.6814    0.3593 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2659    0.2120    1.0826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3595   -1.9866    1.1839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6209   -2.5565    0.9974 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6931   -0.9820   -1.0018 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1961   -2.3069   -1.1158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7554   -0.7714   -2.1254 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3388   -0.4922   -1.7460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2087    0.4857   -0.6079 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9541    1.7103   -0.9828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4921    2.4209   -2.0640 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3599   -2.4479    0.0344 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9118   -2.7316   -1.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8402   -3.2658   -0.3914 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7049    0.0984    1.5076 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8663    1.2272    0.6747 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4302    0.0205   -2.4239 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8170   -1.5456   -0.0454 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1647   -1.0660   -1.6155 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4532   -1.5019   -0.0443 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2012   -0.5110    1.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7344    2.4437   -1.4842 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3564    0.8748   -2.1001 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8113    2.6120   -0.6572 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1201    1.1967    1.8508 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9743    2.8970    1.4125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0966    2.6946    0.4610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5755    2.1558    2.7836 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1083    0.5290    2.6388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6232    1.6188    1.7284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1952    0.1744    2.6608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2135   -0.9502    0.9399 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3254    1.2172    0.6856 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1727    0.1280    2.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2554   -0.2789    0.8381 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5362   -2.6746    0.9511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3189   -1.6801    2.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2565   -2.2979    1.7162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6192   -0.3676   -1.2293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4492   -2.5009   -2.0426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7143   -1.6631   -2.8246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0833    0.0569   -2.8240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8401    0.0046   -2.6310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8255   -1.4407   -1.6141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9939    1.3849   -1.2894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1621    2.3873   -0.0999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6767    3.3877   -1.8825 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  6
  6  8  1  0
  8  9  1  0
 10  9  1  1
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
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 17 18  1  0
 18 19  1  1
 18 20  1  0
 20 21  1  0
 18 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  6
 27 28  1  0
 12  6  1  0
 26 17  1  0
 14 10  1  0
 26 10  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  5 32  1  0
  5 33  1  0
  7 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
  9 38  1  0
 11 39  1  0
 11 40  1  0
 12 41  1  6
 13 42  1  0
 13 43  1  0
 14 44  1  6
 15 45  1  0
 15 46  1  0
 16 47  1  0
 16 48  1  0
 17 49  1  1
 19 50  1  0
 19 51  1  0
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 20 54  1  0
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 22 56  1  6
 23 57  1  0
 24 58  1  0
 24 59  1  0
 25 60  1  0
 25 61  1  0
 27 62  1  0
 27 63  1  0
 28 64  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       6.560  -2.502  -0.731  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.849  -1.165  -0.700  0.00  0.00           C+0
HETATM    3  O   UNK     0       6.052  -0.344  -1.618  0.00  0.00           O+0
HETATM    4  O   UNK     0       4.996  -0.830   0.297  0.00  0.00           O+0
HETATM    5  C   UNK     0       4.238   0.311   0.525  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.188   0.508  -0.499  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.800   0.644  -1.766  0.00  0.00           O+0
HETATM    8  C   UNK     0       2.302  -0.709  -0.561  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.969  -0.535   0.132  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.212   0.686  -0.245  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.065   1.447  -1.220  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.290   1.698  -0.301  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.731   1.842   1.080  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.233   1.730   0.892  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.490   1.284   2.103  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.884   0.828   1.792  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.909  -0.130   0.589  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.238  -0.681   0.359  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.266   0.212   1.083  0.00  0.00           C+0
HETATM   20  C   UNK     0      -3.360  -1.987   1.184  0.00  0.00           C+0
HETATM   21  O   UNK     0      -4.621  -2.557   0.997  0.00  0.00           O+0
HETATM   22  C   UNK     0      -3.693  -0.982  -1.002  0.00  0.00           C+0
HETATM   23  O   UNK     0      -4.196  -2.307  -1.116  0.00  0.00           O+0
HETATM   24  C   UNK     0      -2.755  -0.771  -2.125  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.339  -0.492  -1.746  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.209   0.486  -0.608  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.954   1.710  -0.983  0.00  0.00           C+0
HETATM   28  O   UNK     0      -1.492   2.421  -2.064  0.00  0.00           O+0
HETATM   29  H   UNK     0       7.360  -2.448   0.034  0.00  0.00           H+0
HETATM   30  H   UNK     0       6.912  -2.732  -1.739  0.00  0.00           H+0
HETATM   31  H   UNK     0       5.840  -3.266  -0.391  0.00  0.00           H+0
HETATM   32  H   UNK     0       3.705   0.098   1.508  0.00  0.00           H+0
HETATM   33  H   UNK     0       4.866   1.227   0.675  0.00  0.00           H+0
HETATM   34  H   UNK     0       3.430   0.021  -2.424  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.817  -1.546  -0.045  0.00  0.00           H+0
HETATM   36  H   UNK     0       2.165  -1.066  -1.615  0.00  0.00           H+0
HETATM   37  H   UNK     0       0.453  -1.502  -0.044  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.201  -0.511   1.229  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.734   2.444  -1.484  0.00  0.00           H+0
HETATM   40  H   UNK     0       1.356   0.875  -2.100  0.00  0.00           H+0
HETATM   41  H   UNK     0       2.811   2.612  -0.657  0.00  0.00           H+0
HETATM   42  H   UNK     0       2.120   1.197   1.851  0.00  0.00           H+0
HETATM   43  H   UNK     0       1.974   2.897   1.413  0.00  0.00           H+0
HETATM   44  H   UNK     0      -0.097   2.695   0.461  0.00  0.00           H+0
HETATM   45  H   UNK     0      -0.576   2.156   2.784  0.00  0.00           H+0
HETATM   46  H   UNK     0       0.108   0.529   2.639  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.623   1.619   1.728  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.195   0.174   2.661  0.00  0.00           H+0
HETATM   49  H   UNK     0      -1.214  -0.950   0.940  0.00  0.00           H+0
HETATM   50  H   UNK     0      -4.325   1.217   0.686  0.00  0.00           H+0
HETATM   51  H   UNK     0      -4.173   0.128   2.176  0.00  0.00           H+0
HETATM   52  H   UNK     0      -5.255  -0.279   0.838  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.536  -2.675   0.951  0.00  0.00           H+0
HETATM   54  H   UNK     0      -3.319  -1.680   2.261  0.00  0.00           H+0
HETATM   55  H   UNK     0      -5.256  -2.298   1.716  0.00  0.00           H+0
HETATM   56  H   UNK     0      -4.619  -0.368  -1.229  0.00  0.00           H+0
HETATM   57  H   UNK     0      -4.449  -2.501  -2.043  0.00  0.00           H+0
HETATM   58  H   UNK     0      -2.714  -1.663  -2.825  0.00  0.00           H+0
HETATM   59  H   UNK     0      -3.083   0.057  -2.824  0.00  0.00           H+0
HETATM   60  H   UNK     0      -0.840   0.005  -2.631  0.00  0.00           H+0
HETATM   61  H   UNK     0      -0.826  -1.441  -1.614  0.00  0.00           H+0
HETATM   62  H   UNK     0      -2.994   1.385  -1.289  0.00  0.00           H+0
HETATM   63  H   UNK     0      -2.162   2.387  -0.100  0.00  0.00           H+0
HETATM   64  H   UNK     0      -1.677   3.388  -1.883  0.00  0.00           H+0
CONECT    1    2   29   30   31                                             
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   32   33                                             
CONECT    6    5    7    8   12                                             
CONECT    7    6   34                                                       
CONECT    8    6    9   35   36                                             
CONECT    9    8   10   37   38                                             
CONECT   10    9   11   14   26                                             
CONECT   11   10   12   39   40                                             
CONECT   12   11   13    6   41                                             
CONECT   13   12   14   42   43                                             
CONECT   14   13   15   10   44                                             
CONECT   15   14   16   45   46                                             
CONECT   16   15   17   47   48                                             
CONECT   17   16   18   26   49                                             
CONECT   18   17   19   20   22                                             
CONECT   19   18   50   51   52                                             
CONECT   20   18   21   53   54                                             
CONECT   21   20   55                                                       
CONECT   22   18   23   24   56                                             
CONECT   23   22   57                                                       
CONECT   24   22   25   58   59                                             
CONECT   25   24   26   60   61                                             
CONECT   26   25   27   17   10                                             
CONECT   27   26   28   62   63                                             
CONECT   28   27   64                                                       
CONECT   29    1                                                            
CONECT   30    1                                                            
CONECT   31    1                                                            
CONECT   32    5                                                            
CONECT   33    5                                                            
CONECT   34    7                                                            
CONECT   35    8                                                            
CONECT   36    8                                                            
CONECT   37    9                                                            
CONECT   38    9                                                            
CONECT   39   11                                                            
CONECT   40   11                                                            
CONECT   41   12                                                            
CONECT   42   13                                                            
CONECT   43   13                                                            
CONECT   44   14                                                            
CONECT   45   15                                                            
CONECT   46   15                                                            
CONECT   47   16                                                            
CONECT   48   16                                                            
CONECT   49   17                                                            
CONECT   50   19                                                            
CONECT   51   19                                                            
CONECT   52   19                                                            
CONECT   53   20                                                            
CONECT   54   20                                                            
CONECT   55   21                                                            
CONECT   56   22                                                            
CONECT   57   23                                                            
CONECT   58   24                                                            
CONECT   59   24                                                            
CONECT   60   25                                                            
CONECT   61   25                                                            
CONECT   62   27                                                            
CONECT   63   27                                                            
CONECT   64   28                                                            
MASTER        0    0    0    0    0    0    0    0   64    0  134    0
END

RDKit          3D

64 67  0  0  0  0  0  0  0  0999 V2000
    6.5599   -2.5023   -0.7309 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8487   -1.1646   -0.6997 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0518   -0.3441   -1.6178 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9961   -0.8295    0.2969 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2381    0.3110    0.5246 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1884    0.5082   -0.4986 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7995    0.6435   -1.7662 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3020   -0.7093   -0.5608 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9689   -0.5354    0.1319 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2118    0.6861   -0.2445 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0653    1.4472   -1.2199 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2904    1.6979   -0.3012 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7307    1.8422    1.0801 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2326    1.7297    0.8919 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4897    1.2836    2.1029 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8840    0.8280    1.7916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9087   -0.1295    0.5888 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2380   -0.6814    0.3593 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2659    0.2120    1.0826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3595   -1.9866    1.1839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6209   -2.5565    0.9974 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6931   -0.9820   -1.0018 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1961   -2.3069   -1.1158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7554   -0.7714   -2.1254 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3388   -0.4922   -1.7460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2087    0.4857   -0.6079 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9541    1.7103   -0.9828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4921    2.4209   -2.0640 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3599   -2.4479    0.0344 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9118   -2.7316   -1.7393 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8402   -3.2658   -0.3914 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7049    0.0984    1.5076 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8663    1.2272    0.6747 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4302    0.0205   -2.4239 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8170   -1.5456   -0.0454 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1647   -1.0660   -1.6155 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4532   -1.5019   -0.0443 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2012   -0.5110    1.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7344    2.4437   -1.4842 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3564    0.8748   -2.1001 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8113    2.6120   -0.6572 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1201    1.1967    1.8508 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9743    2.8970    1.4125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0966    2.6946    0.4610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5755    2.1558    2.7836 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1083    0.5290    2.6388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6232    1.6188    1.7284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1952    0.1744    2.6608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2135   -0.9502    0.9399 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3254    1.2172    0.6856 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1727    0.1280    2.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2554   -0.2789    0.8381 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5362   -2.6746    0.9511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3189   -1.6801    2.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2565   -2.2979    1.7162 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6192   -0.3676   -1.2293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4492   -2.5009   -2.0426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7143   -1.6631   -2.8246 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0833    0.0569   -2.8240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8401    0.0046   -2.6310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8255   -1.4407   -1.6141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9939    1.3849   -1.2894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1621    2.3873   -0.0999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6767    3.3877   -1.8825 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  6
  6  8  1  0
  8  9  1  0
 10  9  1  1
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  1
 18 20  1  0
 20 21  1  0
 18 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  6
 27 28  1  0
 12  6  1  0
 26 17  1  0
 14 10  1  0
 26 10  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  5 32  1  0
  5 33  1  0
  7 34  1  0
  8 35  1  0
  8 36  1  0
  9 37  1  0
  9 38  1  0
 11 39  1  0
 11 40  1  0
 12 41  1  6
 13 42  1  0
 13 43  1  0
 14 44  1  6
 15 45  1  0
 15 46  1  0
 16 47  1  0
 16 48  1  0
 17 49  1  1
 19 50  1  0
 19 51  1  0
 19 52  1  0
 20 53  1  0
 20 54  1  0
 21 55  1  0
 22 56  1  6
 23 57  1  0
 24 58  1  0
 24 59  1  0
 25 60  1  0
 25 61  1  0
 27 62  1  0
 27 63  1  0
 28 64  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
[(1S,2R,5R,6R,7R,10S,12R,13R)-5,13-Dihydroxy-2,6-bis(hydroxymethyl)-6-methyltetracyclo[10.3.1.0,.0,]hexadecan-13-yl]methyl acetic acid	Generator

Chemical Formula

C₂₂H₃₆O₆

Average Mass

396.5240 Da

Monoisotopic Mass

396.25119 Da

IUPAC Name

[(1S,2R,5R,6R,7R,10S,12R,13R)-5,13-dihydroxy-2,6-bis(hydroxymethyl)-6-methyltetracyclo[10.3.1.0^{1,10}.0^{2,7}]hexadecan-13-yl]methyl acetate

Traditional Name

[(1S,2R,5R,6R,7R,10S,12R,13R)-5,13-dihydroxy-2,6-bis(hydroxymethyl)-6-methyltetracyclo[10.3.1.0^{1,10}.0^{2,7}]hexadecan-13-yl]methyl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)OC[C@@]1(O)CC[C@]23C[C@H]1C[C@@H]2CC[C@H]1[C@](C)(CO)[C@H](O)CC[C@]31CO

InChI Identifier

InChI=1S/C22H36O6/c1-14(25)28-13-22(27)8-7-20-10-16(22)9-15(20)3-4-17-19(2,11-23)18(26)5-6-21(17,20)12-24/h15-18,23-24,26-27H,3-13H2,1-2H3/t15-,16+,17-,18+,19-,20-,21+,22-/m0/s1

InChI Key

JVAKWTVGVJCPDU-CDKGFNLYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Botryotinia	NPAtlas	31403790

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.68	ALOGPS
logP	0.25	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	13.69	ChemAxon
pKa (Strongest Basic)	-0.71	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	107.22 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	103.31 m³·mol⁻¹	ChemAxon
Polarizability	43.29 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA025336

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78966180

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

145721102

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Aphidicolin A13 (NP0020278)

MOL for NP0020278 (Aphidicolin A13)

3D MOL for NP0020278 (Aphidicolin A13)

3D SDF for NP0020278 (Aphidicolin A13)

3D-SDF for NP0020278 (Aphidicolin A13)

PDB for NP0020278 (Aphidicolin A13)

3D PDB for NP0020278 (Aphidicolin A13)

SMILES for NP0020278 (Aphidicolin A13)

INCHI for NP0020278 (Aphidicolin A13)

Structure for NP0020278 (Aphidicolin A13)

3D Structure for NP0020278 (Aphidicolin A13)