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Record Information
Version2.0
Created at2021-01-06 05:31:53 UTC
Updated at2021-07-15 17:32:35 UTC
NP-MRD IDNP0020036
Secondary Accession NumbersNone
Natural Product Identification
Common NamePlantaribactin
Provided ByNPAtlasNPAtlas Logo
Description Plantaribactin is found in Burkholderia plantarii. Plantaribactin was first documented in 2019 (PMID: 31276269). Based on a literature review very few articles have been published on (2R,3S)-2-hydroxy-3-{[(1S)-2-hydroxy-1-{[(1R)-2-hydroxy-1-{[(3R,9S,12R,15S)-2,5,8,11,14-pentahydroxy-3,12-bis({3-[hydroxy(nitroso)amino]propyl})-9-[2-(C-hydroxycarbonimidoyl)ethyl]-1,4,7,10,13-pentaazacyclooctadeca-1,4,7,10,13-pentaen-15-yl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}-3-[(1-hydroxydodecylidene)amino]propanoic acid.
Structure
Thumb
Synonyms
ValueSource
(2R,3S)-2-Hydroxy-3-{[(1S)-2-hydroxy-1-{[(1R)-2-hydroxy-1-{[(3R,9S,12R,15S)-2,5,8,11,14-pentahydroxy-3,12-bis({3-[hydroxy(nitroso)amino]propyl})-9-[2-(C-hydroxycarbonimidoyl)ethyl]-1,4,7,10,13-pentaazacyclooctadeca-1,4,7,10,13-pentaen-15-yl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}ethyl]-C-hydroxycarbonimidoyl}-3-[(1-hydroxydodecylidene)amino]propanoateGenerator
Chemical FormulaC44H76N14O19
Average Mass1105.1710 Da
Monoisotopic Mass1104.54112 Da
IUPAC Name(2R,3S)-3-{[(1S)-1-{[(1R)-1-{[(3R,9S,12R,15S)-9-(2-carbamoylethyl)-3,12-bis({3-[hydroxy(nitroso)amino]propyl})-2,5,8,11,14-pentaoxo-1,4,7,10,13-pentaazacyclooctadecan-15-yl]carbamoyl}-2-hydroxyethyl]carbamoyl}-2-hydroxyethyl]carbamoyl}-3-dodecanamido-2-hydroxypropanoic acid
Traditional Name(2R,3S)-3-{[(1S)-1-{[(1R)-1-{[(3R,9S,12R,15S)-9-(2-carbamoylethyl)-3,12-bis({3-[hydroxy(nitroso)amino]propyl})-2,5,8,11,14-pentaoxo-1,4,7,10,13-pentaazacyclooctadecan-15-yl]carbamoyl}-2-hydroxyethyl]carbamoyl}-2-hydroxyethyl]carbamoyl}-3-dodecanamido-2-hydroxypropanoic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCC(=O)N[C@@H]([C@@H](O)C(O)=O)C(=O)N[C@@H](CO)C(=O)N[C@H](CO)C(=O)N[C@H]1CCCNC(=O)[C@@H](CCCN(O)N=O)NC(=O)CNC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](CCCN(O)N=O)NC1=O
InChI Identifier
InChI=1S/C44H76N14O19/c1-2-3-4-5-6-7-8-9-10-17-33(62)54-35(36(64)44(72)73)43(71)53-31(25-60)42(70)52-30(24-59)41(69)50-27-14-11-20-46-37(65)26(15-12-21-57(76)55-74)48-34(63)23-47-38(66)29(18-19-32(45)61)51-40(68)28(49-39(27)67)16-13-22-58(77)56-75/h26-31,35-36,59-60,64,76-77H,2-25H2,1H3,(H2,45,61)(H,46,65)(H,47,66)(H,48,63)(H,49,67)(H,50,69)(H,51,68)(H,52,70)(H,53,71)(H,54,62)(H,72,73)/t26-,27+,28-,29+,30-,31+,35+,36-/m1/s1
InChI KeyLZKYOIUQAOXDOE-KXPMJRMKSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Burkholderia plantariiNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.18ALOGPS
logP-5.8ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)3.54ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count21ChemAxon
Hydrogen Donor Count16ChemAxon
Polar Surface Area508.78 ŲChemAxon
Rotatable Bond Count34ChemAxon
Refractivity264.57 m³·mol⁻¹ChemAxon
Polarizability111.16 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA025689
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Hermenau R, Mehl JL, Ishida K, Dose B, Pidot SJ, Stinear TP, Hertweck C: Genomics-Driven Discovery of NO-Donating Diazeniumdiolate Siderophores in Diverse Plant-Associated Bacteria. Angew Chem Int Ed Engl. 2019 Sep 9;58(37):13024-13029. doi: 10.1002/anie.201906326. Epub 2019 Aug 5. [PubMed:31276269 ]