NP-MRD: Showing NP-Card for Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside) (NP0019755)

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Record Information

Version

2.0

Created at

2021-01-06 05:16:57 UTC

Updated at

2021-07-15 17:31:49 UTC

NP-MRD ID

NP0019755

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside)

Provided By

NPAtlas

Description

Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside) is found in Micromonospora and Micromonospora aurantiaca. Based on a literature review very few articles have been published on 7-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3-(4-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4H-chromen-4-one.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242120193D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242120193D          

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M  END
> <DATABASE_ID>
NP0019755

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O[C@@]1([H])C([H])([H])[C@]([H])(OC2=C([H])C([H])=C(C([H])=C2[H])C2=C([H])OC3=C([H])C(O[C@]4([H])O[C@@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@@]([H])(O[H])C4([H])[H])=C([H])C([H])=C3C2=O)O[C@@]([H])(C([H])([H])[H])[C@@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C27H30O10/c1-13-25(30)20(28)10-23(34-13)36-16-5-3-15(4-6-16)19-12-33-22-9-17(7-8-18(22)27(19)32)37-24-11-21(29)26(31)14(2)35-24/h3-9,12-14,20-21,23-26,28-31H,10-11H2,1-2H3/t13-,14-,20-,21-,23-,24-,25+,26+/m0/s1

> <INCHI_KEY>
KXPDEBNQSATJND-JGWMPSIWSA-N

> <FORMULA>
C27H30O10

> <MOLECULAR_WEIGHT>
514.527

> <EXACT_MASS>
514.183897166

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
67

> <JCHEM_AVERAGE_POLARIZABILITY>
54.468194647889966

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
7-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3-(4-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4H-chromen-4-one

> <ALOGPS_LOGP>
1.53

> <JCHEM_LOGP>
2.089397584

> <ALOGPS_LOGS>
-3.44

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.43587424904506

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.85002503315506

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2528864045244017

> <JCHEM_POLAR_SURFACE_AREA>
144.14000000000001

> <JCHEM_REFRACTIVITY>
127.88200000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.86e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3-(4-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}phenyl)chromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

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  1 38  1  0
  1 39  1  0
  1 40  1  0
  2 41  1  6
  4 42  1  1
  7 43  1  0
  8 44  1  0
 11 45  1  0
 14 46  1  0
 17 47  1  1
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 31 60  1  0
 32 61  1  0
 33 62  1  0
 33 63  1  0
 34 64  1  6
 35 65  1  0
 36 66  1  6
 37 67  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       9.811   0.922   0.504  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.454   0.893  -0.195  0.00  0.00           C+0
HETATM    3  O   UNK     0       7.483   0.830   0.772  0.00  0.00           O+0
HETATM    4  C   UNK     0       6.766  -0.369   0.786  0.00  0.00           C+0
HETATM    5  O   UNK     0       5.797  -0.330  -0.198  0.00  0.00           O+0
HETATM    6  C   UNK     0       4.450  -0.343  -0.083  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.684  -0.296  -1.252  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.282  -0.309  -1.147  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.679  -0.367   0.083  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.226  -0.378   0.175  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.436  -1.258   1.017  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.737  -1.224   1.060  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.472  -0.403   0.352  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.847  -0.464   0.486  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.644   0.372  -0.233  0.00  0.00           C+0
HETATM   16  O   UNK     0      -6.011   0.406  -0.185  0.00  0.00           O+0
HETATM   17  C   UNK     0      -6.841  -0.400   0.593  0.00  0.00           C+0
HETATM   18  C   UNK     0      -7.731   0.527   1.433  0.00  0.00           C+0
HETATM   19  C   UNK     0      -8.275   1.552   0.498  0.00  0.00           C+0
HETATM   20  O   UNK     0      -9.544   1.928   0.997  0.00  0.00           O+0
HETATM   21  C   UNK     0      -8.319   1.177  -0.933  0.00  0.00           C+0
HETATM   22  O   UNK     0      -9.540   1.666  -1.459  0.00  0.00           O+0
HETATM   23  C   UNK     0      -8.250  -0.268  -1.242  0.00  0.00           C+0
HETATM   24  C   UNK     0      -9.616  -0.819  -1.591  0.00  0.00           C+0
HETATM   25  O   UNK     0      -7.712  -1.067  -0.262  0.00  0.00           O+0
HETATM   26  C   UNK     0      -4.025   1.280  -1.098  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.662   1.353  -1.243  0.00  0.00           C+0
HETATM   28  C   UNK     0      -1.871   0.496  -0.505  0.00  0.00           C+0
HETATM   29  C   UNK     0      -0.507   0.501  -0.587  0.00  0.00           C+0
HETATM   30  O   UNK     0       0.036   1.322  -1.370  0.00  0.00           O+0
HETATM   31  C   UNK     0       2.428  -0.414   1.229  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.819  -0.402   1.132  0.00  0.00           C+0
HETATM   33  C   UNK     0       7.693  -1.562   0.666  0.00  0.00           C+0
HETATM   34  C   UNK     0       8.449  -1.570  -0.638  0.00  0.00           C+0
HETATM   35  O   UNK     0       9.750  -2.041  -0.494  0.00  0.00           O+0
HETATM   36  C   UNK     0       8.409  -0.194  -1.220  0.00  0.00           C+0
HETATM   37  O   UNK     0       9.449   0.029  -2.126  0.00  0.00           O+0
HETATM   38  H   UNK     0      10.196  -0.088   0.709  0.00  0.00           H+0
HETATM   39  H   UNK     0       9.746   1.444   1.491  0.00  0.00           H+0
HETATM   40  H   UNK     0      10.555   1.474  -0.112  0.00  0.00           H+0
HETATM   41  H   UNK     0       8.324   1.865  -0.755  0.00  0.00           H+0
HETATM   42  H   UNK     0       6.308  -0.429   1.788  0.00  0.00           H+0
HETATM   43  H   UNK     0       4.138  -0.249  -2.228  0.00  0.00           H+0
HETATM   44  H   UNK     0       1.649  -0.273  -2.023  0.00  0.00           H+0
HETATM   45  H   UNK     0       0.155  -1.946   1.612  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.312  -1.175   1.163  0.00  0.00           H+0
HETATM   47  H   UNK     0      -6.341  -1.143   1.219  0.00  0.00           H+0
HETATM   48  H   UNK     0      -8.498  -0.036   1.989  0.00  0.00           H+0
HETATM   49  H   UNK     0      -7.033   0.976   2.187  0.00  0.00           H+0
HETATM   50  H   UNK     0      -7.648   2.483   0.630  0.00  0.00           H+0
HETATM   51  H   UNK     0      -9.414   1.965   1.998  0.00  0.00           H+0
HETATM   52  H   UNK     0      -7.532   1.757  -1.499  0.00  0.00           H+0
HETATM   53  H   UNK     0      -9.839   2.425  -0.924  0.00  0.00           H+0
HETATM   54  H   UNK     0      -7.613  -0.398  -2.153  0.00  0.00           H+0
HETATM   55  H   UNK     0     -10.138  -1.231  -0.703  0.00  0.00           H+0
HETATM   56  H   UNK     0     -10.220  -0.067  -2.138  0.00  0.00           H+0
HETATM   57  H   UNK     0      -9.458  -1.676  -2.277  0.00  0.00           H+0
HETATM   58  H   UNK     0      -4.636   1.957  -1.681  0.00  0.00           H+0
HETATM   59  H   UNK     0      -2.167   2.048  -1.907  0.00  0.00           H+0
HETATM   60  H   UNK     0       1.981  -0.461   2.210  0.00  0.00           H+0
HETATM   61  H   UNK     0       4.341  -0.441   2.076  0.00  0.00           H+0
HETATM   62  H   UNK     0       7.080  -2.473   0.803  0.00  0.00           H+0
HETATM   63  H   UNK     0       8.432  -1.539   1.489  0.00  0.00           H+0
HETATM   64  H   UNK     0       7.914  -2.251  -1.336  0.00  0.00           H+0
HETATM   65  H   UNK     0       9.815  -2.494   0.387  0.00  0.00           H+0
HETATM   66  H   UNK     0       7.471  -0.090  -1.808  0.00  0.00           H+0
HETATM   67  H   UNK     0      10.121  -0.710  -2.081  0.00  0.00           H+0
CONECT    1    2   38   39   40                                             
CONECT    2    1    3   36   41                                             
CONECT    3    2    4                                                       
CONECT    4    3    5   33   42                                             
CONECT    5    4    6                                                       
CONECT    6    5    7   32                                                  
CONECT    7    6    8   43                                                  
CONECT    8    7    9   44                                                  
CONECT    9    8   10   31                                                  
CONECT   10    9   11   29                                                  
CONECT   11   10   12   45                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   28                                                  
CONECT   14   13   15   46                                                  
CONECT   15   14   16   26                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   25   47                                             
CONECT   18   17   19   48   49                                             
CONECT   19   18   20   21   50                                             
CONECT   20   19   51                                                       
CONECT   21   19   22   23   52                                             
CONECT   22   21   53                                                       
CONECT   23   21   24   25   54                                             
CONECT   24   23   55   56   57                                             
CONECT   25   23   17                                                       
CONECT   26   15   27   58                                                  
CONECT   27   26   28   59                                                  
CONECT   28   27   29   13                                                  
CONECT   29   28   30   10                                                  
CONECT   30   29                                                            
CONECT   31    9   32   60                                                  
CONECT   32   31    6   61                                                  
CONECT   33    4   34   62   63                                             
CONECT   34   33   35   36   64                                             
CONECT   35   34   65                                                       
CONECT   36   34   37    2   66                                             
CONECT   37   36   67                                                       
CONECT   38    1                                                            
CONECT   39    1                                                            
CONECT   40    1                                                            
CONECT   41    2                                                            
CONECT   42    4                                                            
CONECT   43    7                                                            
CONECT   44    8                                                            
CONECT   45   11                                                            
CONECT   46   14                                                            
CONECT   47   17                                                            
CONECT   48   18                                                            
CONECT   49   18                                                            
CONECT   50   19                                                            
CONECT   51   20                                                            
CONECT   52   21                                                            
CONECT   53   22                                                            
CONECT   54   23                                                            
CONECT   55   24                                                            
CONECT   56   24                                                            
CONECT   57   24                                                            
CONECT   58   26                                                            
CONECT   59   27                                                            
CONECT   60   31                                                            
CONECT   61   32                                                            
CONECT   62   33                                                            
CONECT   63   33                                                            
CONECT   64   34                                                            
CONECT   65   35                                                            
CONECT   66   36                                                            
CONECT   67   37                                                            
MASTER        0    0    0    0    0    0    0    0   67    0  142    0
END

RDKit          3D

67 71  0  0  0  0  0  0  0  0999 V2000
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  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
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 29 30  2  0
  9 31  1  0
 31 32  2  0
  4 33  1  0
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 34 36  1  0
 36 37  1  0
 36  2  1  0
 32  6  1  0
 29 10  1  0
 28 13  1  0
 25 17  1  0
  1 38  1  0
  1 39  1  0
  1 40  1  0
  2 41  1  6
  4 42  1  1
  7 43  1  0
  8 44  1  0
 11 45  1  0
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 17 47  1  1
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 27 59  1  0
 31 60  1  0
 32 61  1  0
 33 62  1  0
 33 63  1  0
 34 64  1  6
 35 65  1  0
 36 66  1  6
 37 67  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Daidzein-4',7-di-(2-deoxy-a-L-fucopyranoside)	Generator
Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside)	Generator

Chemical Formula

C₂₇H₃₀O₁₀

Average Mass

514.5270 Da

Monoisotopic Mass

514.18390 Da

IUPAC Name

7-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3-(4-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}phenyl)-4H-chromen-4-one

Traditional Name

7-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3-(4-{[(2S,4S,5S,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}phenyl)chromen-4-one

CAS Registry Number

Not Available

SMILES

C[C@@H]1O[C@H](C[C@H](O)[C@@H]1O)OC1=CC=C(C=C1)C1=COC2=C(C=CC(O[C@H]3C[C@H](O)[C@H](O)[C@H](C)O3)=C2)C1=O

InChI Identifier

InChI=1S/C27H30O10/c1-13-25(30)20(28)10-23(34-13)36-16-5-3-15(4-6-16)19-12-33-22-9-17(7-8-18(22)27(19)32)37-24-11-21(29)26(31)14(2)35-24/h3-9,12-14,20-21,23-26,28-31H,10-11H2,1-2H3/t13-,14-,20-,21-,23-,24-,25+,26+/m0/s1

InChI Key

KXPDEBNQSATJND-JGWMPSIWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Micromonospora	NPAtlas	31108876
Micromonospora aurantiaca	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.53	ALOGPS
logP	2.09	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	12.85	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	144.14 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	127.88 m³·mol⁻¹	ChemAxon
Polarizability	54.47 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA026497

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146682927

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside) (NP0019755)

MOL for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))

3D MOL for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))

3D SDF for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))

3D-SDF for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))

PDB for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))

3D PDB for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))

SMILES for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))

INCHI for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))

Structure for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))

3D Structure for NP0019755 (Daidzein-4',7-di-(2-deoxy-α-L-fucopyranoside))