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Record Information
Version1.0
Created at2021-01-06 04:59:26 UTC
Updated at2021-07-15 17:31:07 UTC
NP-MRD IDNP0019491
Secondary Accession NumbersNone
Natural Product Identification
Common NameAtrovimycin
Provided ByNPAtlasNPAtlas Logo
Description Atrovimycin is found in Streptomyces and Streptomyces atrovirens. It was first documented in 2019 (PMID: 30958008). Based on a literature review very few articles have been published on 3-{2-[(1R,2S,3E)-1,2-dihydroxypent-3-en-1-yl]phenyl}-N-[(3R,6S,9R,12R,15R,18S,21S,24R,27S,30S,31S)-5,8,11,14,17,20,23,26,29-nonahydroxy-21-[(R)-hydroxy(phenyl)methyl]-15-[(1R)-1-hydroxyethyl]-12,18,27-tris(hydroxymethyl)-9-(4-hydroxyphenyl)-31-methyl-3,24-bis(2-methylpropyl)-2-oxo-6-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriaconta-4,7,10,13,16,19,22,25,28-nonaen-30-yl]prop-2-enimidic acid.
Structure
Thumb
Synonyms
ValueSource
3-{2-[(1R,2S,3E)-1,2-dihydroxypent-3-en-1-yl]phenyl}-N-[(3R,6S,9R,12R,15R,18S,21S,24R,27S,30S,31S)-5,8,11,14,17,20,23,26,29-nonahydroxy-21-[(R)-hydroxy(phenyl)methyl]-15-[(1R)-1-hydroxyethyl]-12,18,27-tris(hydroxymethyl)-9-(4-hydroxyphenyl)-31-methyl-3,24-bis(2-methylpropyl)-2-oxo-6-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriaconta-4,7,10,13,16,19,22,25,28-nonaen-30-yl]prop-2-enimidateGenerator
Chemical FormulaC65H90N10O20
Average Mass1331.4850 Da
Monoisotopic Mass1330.63329 Da
IUPAC Name(2E)-3-{2-[(1R,2S,3E)-1,2-dihydroxypent-3-en-1-yl]phenyl}-N-[(3R,6S,9R,12R,15R,18S,21S,24R,27S,30S,31S)-21-[(R)-hydroxy(phenyl)methyl]-15-[(1R)-1-hydroxyethyl]-12,18,27-tris(hydroxymethyl)-9-(4-hydroxyphenyl)-31-methyl-3,24-bis(2-methylpropyl)-2,5,8,11,14,17,20,23,26,29-decaoxo-6-(propan-2-yl)-1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriacontan-30-yl]prop-2-enamide
Traditional Name(2E)-3-{2-[(1R,2S,3E)-1,2-dihydroxypent-3-en-1-yl]phenyl}-N-[(3R,6S,9R,12R,15R,18S,21S,24R,27S,30S,31S)-21-[(R)-hydroxy(phenyl)methyl]-15-[(1R)-1-hydroxyethyl]-12,18,27-tris(hydroxymethyl)-9-(4-hydroxyphenyl)-6-isopropyl-31-methyl-3,24-bis(2-methylpropyl)-2,5,8,11,14,17,20,23,26,29-decaoxo-1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriacontan-30-yl]prop-2-enamide
CAS Registry NumberNot Available
SMILES
C\C=C\[C@H](O)[C@H](O)C1=CC=CC=C1\C=C\C(=O)N[C@H]1[C@H](C)OC(=O)[C@@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](NC(=O)[C@@H](CO)NC(=O)[C@H](NC(=O)[C@H](CO)NC(=O)[C@@H](NC(=O)[C@@H](CC(C)C)NC(=O)[C@H](CO)NC1=O)[C@H](O)C1=CC=CC=C1)[C@@H](C)O)C1=CC=C(O)C=C1)C(C)C
InChI Identifier
InChI=1S/C65H90N10O20/c1-10-16-47(81)55(84)41-20-15-14-17-37(41)23-26-48(82)71-51-36(9)95-65(94)43(28-33(4)5)67-60(89)49(34(6)7)72-63(92)52(38-21-24-40(80)25-22-38)74-59(88)46(31-78)68-61(90)50(35(8)79)73-58(87)45(30-77)70-64(93)53(54(83)39-18-12-11-13-19-39)75-56(85)42(27-32(2)3)66-57(86)44(29-76)69-62(51)91/h10-26,32-36,42-47,49-55,76-81,83-84H,27-31H2,1-9H3,(H,66,86)(H,67,89)(H,68,90)(H,69,91)(H,70,93)(H,71,82)(H,72,92)(H,73,87)(H,74,88)(H,75,85)/b16-10+,26-23+/t35-,36+,42-,43-,44+,45+,46-,47+,49+,50-,51+,52-,53+,54-,55-/m1/s1
InChI KeyTZSMAOIVOPIADO-ZNXQRINOSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces atrovirensLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.06ALOGPS
logP-2ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)9.46ChemAxon
pKa (Strongest Basic)-6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count18ChemAxon
Polar Surface Area479.14 ŲChemAxon
Rotatable Bond Count18ChemAxon
Refractivity340.4 m³·mol⁻¹ChemAxon
Polarizability138.38 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA026766
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146683185
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Liu Q, Liu Z, Sun C, Shao M, Ma J, Wei X, Zhang T, Li W, Ju J: Discovery and Biosynthesis of Atrovimycin, an Antitubercular and Antifungal Cyclodepsipeptide Featuring Vicinal-dihydroxylated Cinnamic Acyl Chain. Org Lett. 2019 Apr 19;21(8):2634-2638. doi: 10.1021/acs.orglett.9b00618. Epub 2019 Apr 8. [PubMed:30958008 ]