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Record Information
Version1.0
Created at2021-01-06 04:57:55 UTC
Updated at2021-07-15 17:31:01 UTC
NP-MRD IDNP0019456
Secondary Accession NumbersNone
Natural Product Identification
Common NameAcyclolaxaphycin A
Provided ByNPAtlasNPAtlas Logo
Description2-{[(2S)-2-{[(2R,3S)-2-{[(2S,3S)-2-{[(2R)-2-{[(2R)-2-{[(2S)-2-({[(2S,4R)-1-[(2E)-2-{[(2S)-2-{[(3R)-3-amino-1-hydroxyoctylidene]amino}-1,4-dihydroxybutylidene]amino}but-2-enoyl]-4-hydroxypyrrolidin-2-yl](hydroxy)methylidene}amino)-1,4-dihydroxybutylidene]amino}-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-3-methylpentylidene]amino}-1-hydroxy-3-methylpentylidene]amino}-1-hydroxy-4-methylpentylidene]amino}acetic acid belongs to the class of organic compounds known as peptides. Peptides are compounds containing an amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another. Acyclolaxaphycin A is found in Anabaena torulosa. It was first documented in 2019 (PMID: 30929947). Based on a literature review very few articles have been published on 2-{[(2S)-2-{[(2R,3S)-2-{[(2S,3S)-2-{[(2R)-2-{[(2R)-2-{[(2S)-2-({[(2S,4R)-1-[(2E)-2-{[(2S)-2-{[(3R)-3-amino-1-hydroxyoctylidene]amino}-1,4-dihydroxybutylidene]amino}but-2-enoyl]-4-hydroxypyrrolidin-2-yl](hydroxy)methylidene}amino)-1,4-dihydroxybutylidene]amino}-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-3-methylpentylidene]amino}-1-hydroxy-3-methylpentylidene]amino}-1-hydroxy-4-methylpentylidene]amino}acetic acid.
Structure
Thumb
Synonyms
ValueSource
2-{[(2S)-2-{[(2R,3S)-2-{[(2S,3S)-2-{[(2R)-2-{[(2R)-2-{[(2S)-2-({[(2S,4R)-1-[(2E)-2-{[(2S)-2-{[(3R)-3-amino-1-hydroxyoctylidene]amino}-1,4-dihydroxybutylidene]amino}but-2-enoyl]-4-hydroxypyrrolidin-2-yl](hydroxy)methylidene}amino)-1,4-dihydroxybutylidene]amino}-1-hydroxy-3-phenylpropylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-3-methylpentylidene]amino}-1-hydroxy-3-methylpentylidene]amino}-1-hydroxy-4-methylpentylidene]amino}acetateGenerator
Chemical FormulaC60H99N11O15
Average Mass1214.5140 Da
Monoisotopic Mass1213.73221 Da
IUPAC Name2-[(2S)-2-[(2R,3S)-2-[(2S,3S)-2-[(2R)-2-[(2R)-2-[(2S)-2-{[(2S,4R)-1-[(2E)-2-[(2S)-2-[(3R)-3-aminooctanamido]-4-hydroxybutanamido]but-2-enoyl]-4-hydroxypyrrolidin-2-yl]formamido}-4-hydroxybutanamido]-3-phenylpropanamido]-4-methylpentanamido]-3-methylpentanamido]-3-methylpentanamido]-4-methylpentanamido]acetic acid
Traditional Name[(2S)-2-[(2R,3S)-2-[(2S,3S)-2-[(2R)-2-[(2R)-2-[(2S)-2-{[(2S,4R)-1-[(2E)-2-[(2S)-2-[(3R)-3-aminooctanamido]-4-hydroxybutanamido]but-2-enoyl]-4-hydroxypyrrolidin-2-yl]formamido}-4-hydroxybutanamido]-3-phenylpropanamido]-4-methylpentanamido]-3-methylpentanamido]-3-methylpentanamido]-4-methylpentanamido]acetic acid
CAS Registry NumberNot Available
SMILES
CCCCC[C@@H](N)CC(=O)N[C@@H](CCO)C(=O)N\C(=C\C)C(=O)N1C[C@H](O)C[C@H]1C(=O)N[C@@H](CCO)C(=O)N[C@H](CC1=CC=CC=C1)C(=O)N[C@H](CC(C)C)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@H]([C@@H](C)CC)C(=O)N[C@@H](CC(C)C)C(=O)NCC(O)=O
InChI Identifier
InChI=1S/C60H99N11O15/c1-11-15-17-22-39(61)30-48(75)63-42(23-25-72)53(79)64-41(14-4)60(86)71-33-40(74)31-47(71)57(83)65-43(24-26-73)54(80)67-46(29-38-20-18-16-19-21-38)55(81)66-45(28-35(7)8)56(82)69-51(37(10)13-3)59(85)70-50(36(9)12-2)58(84)68-44(27-34(5)6)52(78)62-32-49(76)77/h14,16,18-21,34-37,39-40,42-47,50-51,72-74H,11-13,15,17,22-33,61H2,1-10H3,(H,62,78)(H,63,75)(H,64,79)(H,65,83)(H,66,81)(H,67,80)(H,68,84)(H,69,82)(H,70,85)(H,76,77)/b41-14+/t36-,37-,39+,40+,42-,43-,44-,45+,46+,47-,50+,51-/m0/s1
InChI KeyWSDZDIHEDAEEBI-NZVCJXAPSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Anabaena torulosaNPAtlas
Chemical Taxonomy
Description Belongs to the class of organic compounds known as peptides. Peptides are compounds containing an amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentPeptides
Alternative Parents
Substituents
  • Alpha peptide
  • N-acyl-alpha amino acid or derivatives
  • N-acyl-alpha-amino acid
  • Alpha-amino acid amide
  • Amphetamine or derivatives
  • Alpha-amino acid or derivatives
  • N-acylpyrrolidine
  • Benzenoid
  • Monocyclic benzene moiety
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Amino acid
  • Secondary alcohol
  • Carboxamide group
  • Amino acid or derivatives
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboximidic acid derivative
  • Carboximidic acid
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary amine
  • Primary alcohol
  • Organooxygen compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Carbonyl group
  • Amine
  • Alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.57ALOGPS
logP-2.5ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)3.52ChemAxon
pKa (Strongest Basic)9.36ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count16ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area406.22 ŲChemAxon
Rotatable Bond Count39ChemAxon
Refractivity319.01 m³·mol⁻¹ChemAxon
Polarizability134.34 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA025832
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID79300777
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146682308
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Bornancin L, Alonso E, Alvarino R, Inguimbert N, Bonnard I, Botana LM, Banaigs B: Structure and biological evaluation of new cyclic and acyclic laxaphycin-A type peptides. Bioorg Med Chem. 2019 May 15;27(10):1966-1980. doi: 10.1016/j.bmc.2019.03.046. Epub 2019 Mar 26. [PubMed:30929947 ]