Np mrd loader

Record Information
Version1.0
Created at2021-01-06 04:53:23 UTC
Updated at2021-07-15 17:30:44 UTC
NP-MRD IDNP0019350
Secondary Accession NumbersNone
Natural Product Identification
Common NameVirginiamycin M1
Provided ByNPAtlasNPAtlas Logo
DescriptionVirginiamycin m1 is also known as staphylomycin m or ostreogrycin g. Virginiamycin M1 is found in Streptomyces virginiae and Unknown-fungus sp.. It was first documented in 1986 (PMID: 3084440). Based on a literature review a significant number of articles have been published on virginiamycin m1 (PMID: 34157539) (PMID: 34043498) (PMID: 33774675) (PMID: 32924591) (PMID: 32522108) (PMID: 31307989).
Structure
Data?1624571476
Synonyms
ValueSource
Ostreogrycin gMeSH
Pristinamycin iiaMeSH
Pristinamycin iibMeSH
Staphylomycin mMeSH
Staphylomycin m1MeSH
Streptogramin aMeSH
Virginiamycin factor m1MeSH
Virginiamycin iibMeSH
Chemical FormulaC28H35N3O7
Average Mass525.6020 Da
Monoisotopic Mass525.24750 Da
IUPAC Name(10R,11R,12Z,17Z,19Z,21S)-21-hydroxy-11,19-dimethyl-10-(propan-2-yl)-9,26-dioxa-3,15,28-triazatricyclo[23.2.1.0^{3,7}]octacosa-1(27),6,12,17,19,25(28)-hexaene-2,8,14,23-tetrone
Traditional Name(10R,11R,12Z,17Z,19Z,21S)-21-hydroxy-10-isopropyl-11,19-dimethyl-9,26-dioxa-3,15,28-triazatricyclo[23.2.1.0^{3,7}]octacosa-1(27),6,12,17,19,25(28)-hexaene-2,8,14,23-tetrone
CAS Registry NumberNot Available
SMILES
CC(C)[C@H]1OC(=O)C2=CCCN2C(=O)C2=COC(CC(=O)C[C@H](O)\C=C(\C)/C=C\CNC(=O)\C=C/[C@H]1C)=N2
InChI Identifier
InChI=1S/C28H35N3O7/c1-17(2)26-19(4)9-10-24(34)29-11-5-7-18(3)13-20(32)14-21(33)15-25-30-22(16-37-25)27(35)31-12-6-8-23(31)28(36)38-26/h5,7-10,13,16-17,19-20,26,32H,6,11-12,14-15H2,1-4H3,(H,29,34)/b7-5-,10-9-,18-13-/t19-,20-,26-/m1/s1
InChI KeyDAIKHDNSXMZDCU-QHKJSJJMSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces virginiaeLOTUS Database
Unknown-fungus sp.NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.6ALOGPS
logP2.38ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)11.38ChemAxon
pKa (Strongest Basic)-0.16ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area139.04 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity144.17 m³·mol⁻¹ChemAxon
Polarizability54.9 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA003740
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID4573124
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound16220095
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Burridge R, Warren C, Phillips I: Macrolide, lincosamide and streptogramin resistance in Campylobacter jejuni/coli. J Antimicrob Chemother. 1986 Mar;17(3):315-21. doi: 10.1093/jac/17.3.315. [PubMed:3084440 ]
  2. Ehrhart AL, Granek EF: Pharmaceuticals and alkylphenols in transplanted Pacific oysters (Crassostrea gigas): Spatial variation and growth effects. Mar Pollut Bull. 2021 Sep;170:112584. doi: 10.1016/j.marpolbul.2021.112584. Epub 2021 Jun 20. [PubMed:34157539 ]
  3. Gaugain M, Raynaud A, Bourcier S, Verdon E, Hurtaud-Pessel D: Development of a liquid chromatography-tandem mass spectrometry method to determine colistin, bacitracin and virginiamycin M1 at cross-contamination levels in animal feed. Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2021 May 27:1-14. doi: 10.1080/19440049.2021.1922760. [PubMed:34043498 ]
  4. De Alwis HG, Nochetto C, Kijak PJ: An LC-MS/MS Method for the Determination of Antibiotic Residues in Distillers Grains: Collaborative Study. J AOAC Int. 2021 Mar 28. pii: 6198108. doi: 10.1093/jaoacint/qsab026. [PubMed:33774675 ]
  5. Jiang ZK, Hu XX, Xiao LL, Ren YR, Shakhtina AN, Lukianov DA, Osterman IA, Sergiev PV, Dontsova OA, Wang H, Wu G, You XF, Sun CH: Beilunmycin, a new virginiamycins antibiotic from mangrove-derived Streptomyces sp. 2BBP-J2 and the antibacterial activity by inhibiting protein translation. J Asian Nat Prod Res. 2020 Sep 14:1-9. doi: 10.1080/10286020.2020.1810669. [PubMed:32924591 ]
  6. Wu IL, Turnipseed SB, Andersen WC, Madson MR: Analysis of peptide antibiotic residues in milk using liquid chromatography-high resolution mass spectrometry (LC-HRMS). Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2020 Aug;37(8):1264-1278. doi: 10.1080/19440049.2020.1766703. Epub 2020 Jun 10. [PubMed:32522108 ]
  7. Garcia-Martin AB, Schwendener S, Perreten V: The tva(A) Gene from Brachyspira hyodysenteriae Confers Decreased Susceptibility to Pleuromutilins and Streptogramin A in Escherichia coli. Antimicrob Agents Chemother. 2019 Aug 23;63(9). pii: AAC.00930-19. doi: 10.1128/AAC.00930-19. Print 2019 Sep. [PubMed:31307989 ]
  8. Song X, Huang Q, Zhang Y, Zhang M, Xie J, He L: Rapid multiresidue analysis of authorized/banned cyclopolypeptide antibiotics in feed by liquid chromatography-tandem mass spectrometry based on dispersive solid-phase extraction. J Pharm Biomed Anal. 2019 Jun 5;170:234-242. doi: 10.1016/j.jpba.2019.03.050. Epub 2019 Mar 26. [PubMed:30939416 ]
  9. Authors unspecified: Quniupristin-Dalfopristin. 2006. [PubMed:30000858 ]