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Record Information
Version2.0
Created at2021-01-06 04:53:02 UTC
Updated at2021-07-15 17:30:43 UTC
NP-MRD IDNP0019343
Secondary Accession NumbersNone
Natural Product Identification
Common NameCebulantin
Provided ByNPAtlasNPAtlas Logo
Description Cebulantin is found in Saccharopolyspora cebuensis. Cebulantin was first documented in 2019 (PMID: 30843641). Based on a literature review very few articles have been published on Cebulantin.
Structure
Thumb
Synonyms
ValueSource
(3R,6S,9S,15S,18S,21S)-21-({[(2S)-1-[(1S,2S,5R,8S,10R,20S,23R,26S,27S,30S)-27-{[(2S,3S)-2-({[(1R)-2-(2-aminoacetyl)cyclopentyl](hydroxy)methylidene}amino)-1-hydroxy-3-methylpentylidene]amino}-30-benzyl-14,36-diethylidene-7,10,16,19,22,28,31,34,37,39-decahydroxy-20-[(1H-indol-3-yl)methyl]-2,26-dimethyl-13-oxo-3,25-dithia-6,12,15,18,21,29,32,35,38,40-decaazatricyclo[21.15.2.0,]tetraconta-6,15,18,21,28,31,34,37,39-nonaene-5-carbonyl]pyrrolidin-2-yl](hydroxy)methylidene}amino)-12-ethylidene-5,8,11,14,17,20-hexahydroxy-15-[(C-hydroxycarbonimidoyl)methyl]-6-(hydroxymethyl)-18-methyl-9-(propan-2-yl)-1-thia-4,7,10,13,16,19-hexaazacyclodocosa-4,7,10,13,16,19-hexaene-3-carboxylateGenerator
Chemical FormulaC95H131N23O26S3
Average Mass2107.4100 Da
Monoisotopic Mass2105.87977 Da
IUPAC Name(3R,6S,9S,12Z,15S,18S,21S)-21-[(2S)-1-[(1S,2S,5R,8S,10R,14Z,20S,23R,26S,27S,30S,36Z)-27-[(2S,3S)-2-{[(1R,2R)-2-(2-aminoacetyl)cyclopentyl]formamido}-3-methylpentanamido]-30-benzyl-14,36-diethylidene-10-hydroxy-20-[(1H-indol-3-yl)methyl]-2,26-dimethyl-7,13,16,19,22,28,31,34,37,39-decaoxo-3,25-dithia-6,12,15,18,21,29,32,35,38,40-decaazatricyclo[21.15.2.0^{8,12}]tetracontane-5-carbonyl]pyrrolidine-2-amido]-15-(carbamoylmethyl)-12-ethylidene-6-(hydroxymethyl)-18-methyl-5,8,11,14,17,20-hexaoxo-9-(propan-2-yl)-1-thia-4,7,10,13,16,19-hexaazacyclodocosane-3-carboxylic acid
Traditional Name(3R,6S,9S,12Z,15S,18S,21S)-21-[(2S)-1-[(1S,2S,5R,8S,10R,14Z,20S,23R,26S,27S,30S,36Z)-27-[(2S,3S)-2-{[(1R,2R)-2-(2-aminoacetyl)cyclopentyl]formamido}-3-methylpentanamido]-30-benzyl-14,36-diethylidene-10-hydroxy-20-(1H-indol-3-ylmethyl)-2,26-dimethyl-7,13,16,19,22,28,31,34,37,39-decaoxo-3,25-dithia-6,12,15,18,21,29,32,35,38,40-decaazatricyclo[21.15.2.0^{8,12}]tetracontane-5-carbonyl]pyrrolidine-2-amido]-15-(carbamoylmethyl)-12-ethylidene-6-(hydroxymethyl)-9-isopropyl-18-methyl-5,8,11,14,17,20-hexaoxo-1-thia-4,7,10,13,16,19-hexaazacyclodocosane-3-carboxylic acid
CAS Registry NumberNot Available
SMILES
CC[C@H](C)[C@H](NC(=O)[C@@H]1CCCC1C(=O)CN)C(=O)N[C@@H]1[C@H](C)SC[C@@H]2NC(=O)[C@H](NC(=O)C(NC(=O)CNC(=O)[C@H](CC3=CC=CC=C3)NC1=O)=CC)[C@H](C)SC[C@H](NC(=O)[C@@H]1C[C@@H](O)CN1C(=O)C(NC(=O)CNC(=O)[C@H](CC1=CNC3=CC=CC=C13)NC2=O)=CC)C(=O)N1CCC[C@H]1C(=O)N[C@@H]1CSC[C@H](NC(=O)[C@H](CO)NC(=O)[C@@H](NC(=O)C(NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](C)NC1=O)=CC)C(C)C)C(O)=O
InChI Identifier
InChI=1S/C95H131N23O26S3/c1-11-45(7)74(114-78(126)54-26-20-25-53(54)69(121)34-96)90(138)116-76-48(10)146-42-64-86(134)106-60(31-50-35-98-58-27-19-18-24-52(50)58)80(128)100-37-72(124)103-57(14-4)93(141)118-38-51(120)32-68(118)88(136)111-65(43-147-47(9)75(92(140)110-64)115-81(129)55(12-2)102-71(123)36-99-79(127)59(107-91(76)139)30-49-22-16-15-17-23-49)94(142)117-29-21-28-67(117)87(135)109-63-40-145-41-66(95(143)144)112-84(132)62(39-119)108-89(137)73(44(5)6)113-82(130)56(13-3)104-83(131)61(33-70(97)122)105-77(125)46(8)101-85(63)133/h12-19,22-24,27,35,44-48,51,53-54,59-68,73-76,98,119-120H,11,20-21,25-26,28-34,36-43,96H2,1-10H3,(H2,97,122)(H,99,127)(H,100,128)(H,101,133)(H,102,123)(H,103,124)(H,104,131)(H,105,125)(H,106,134)(H,107,139)(H,108,137)(H,109,135)(H,110,140)(H,111,136)(H,112,132)(H,113,130)(H,114,126)(H,115,129)(H,116,138)(H,143,144)/t45-,46-,47-,48-,51+,53?,54+,59-,60-,61-,62-,63+,64-,65-,66-,67-,68-,73-,74-,75+,76+/m0/s1
InChI KeyNFKAZFDQELSTCL-ZOSKEMBGSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Saccharopolyspora cebuensisNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-11ChemAxon
pKa (Strongest Acidic)3.1ChemAxon
pKa (Strongest Basic)7.52ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count27ChemAxon
Hydrogen Donor Count24ChemAxon
Polar Surface Area744.15 ŲChemAxon
Rotatable Bond Count20ChemAxon
Refractivity533.02 m³·mol⁻¹ChemAxon
Polarizability213.26 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA025668
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146682147
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Moon K, Xu F, Seyedsayamdost MR: Cebulantin, a Cryptic Lanthipeptide Antibiotic Uncovered Using Bioactivity-Coupled HiTES. Angew Chem Int Ed Engl. 2019 Apr 23;58(18):5973-5977. doi: 10.1002/anie.201901342. Epub 2019 Mar 28. [PubMed:30843641 ]