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Record Information
Version1.0
Created at2021-01-06 04:47:42 UTC
Updated at2021-07-15 17:30:23 UTC
NP-MRD IDNP0019222
Secondary Accession NumbersNone
Natural Product Identification
Common NameAtratumycin
Provided ByNPAtlasNPAtlas Logo
Description Atratumycin is found in Streptomyces and Streptomyces atratus. It was first documented in 2019 (PMID: 30746943). Based on a literature review very few articles have been published on Atratumycin.
Structure
Thumb
Synonyms
ValueSource
(2E)-N-[(3R,9R,12R,15R,16S,19S,22S,25R,28S,33AS)-1,4,7,10,17,20,23,26-octahydroxy-28-[(S)-hydroxy(phenyl)methyl]-25-[(C-hydroxycarbonimidoyl)methyl]-19-(hydroxymethyl)-12-[(4-hydroxyphenyl)methyl]-22-[(1H-indol-3-yl)methyl]-15-methyl-9-(2-methylpropyl)-13,29-dioxo-3-(propan-2-yl)-3H,6H,9H,12H,13H,15H,16H,19H,22H,25H,28H,29H,31H,32H,33H,33ah-pyrrolo[2,1-O]1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriacontan-16-yl]-3-(2-methylphenyl)prop-2-enimidateGenerator
Chemical FormulaC68H84N12O16
Average Mass1325.4880 Da
Monoisotopic Mass1324.61282 Da
IUPAC Name(2E)-N-[(3R,9R,12R,15R,16S,19S,22S,25R,28S,33aS)-25-(carbamoylmethyl)-28-[(S)-hydroxy(phenyl)methyl]-19-(hydroxymethyl)-12-[(4-hydroxyphenyl)methyl]-22-[(1H-indol-3-yl)methyl]-15-methyl-9-(2-methylpropyl)-1,4,7,10,13,17,20,23,26,29-decaoxo-3-(propan-2-yl)-dotriacontahydropyrrolo[2,1-o]1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriacontan-16-yl]-3-(2-methylphenyl)prop-2-enamide
Traditional Name(2E)-N-[(3R,9R,12R,15R,16S,19S,22S,25R,28S,33aS)-25-(carbamoylmethyl)-28-[(S)-hydroxy(phenyl)methyl]-19-(hydroxymethyl)-12-[(4-hydroxyphenyl)methyl]-22-(1H-indol-3-ylmethyl)-3-isopropyl-15-methyl-9-(2-methylpropyl)-1,4,7,10,13,17,20,23,26,29-decaoxo-docosahydropyrrolo[2,1-o]1-oxa-4,7,10,13,16,19,22,25,28-nonaazacyclohentriacontan-16-yl]-3-(2-methylphenyl)prop-2-enamide
CAS Registry NumberNot Available
SMILES
CC(C)C[C@H]1NC(=O)CNC(=O)[C@H](NC(=O)[C@@H]2CCCN2C(=O)[C@@H](NC(=O)[C@@H](CC(N)=O)NC(=O)[C@H](CC2=CNC3=CC=CC=C23)NC(=O)[C@H](CO)NC(=O)[C@@H](NC(=O)\C=C\C2=CC=CC=C2C)[C@@H](C)OC(=O)[C@@H](CC2=CC=C(O)C=C2)NC1=O)[C@@H](O)C1=CC=CC=C1)C(C)C
InChI Identifier
InChI=1S/C68H84N12O16/c1-36(2)29-47-60(87)75-50(30-40-22-25-44(82)26-23-40)68(95)96-39(6)57(77-54(84)27-24-41-16-11-10-15-38(41)5)66(93)76-51(35-81)63(90)73-48(31-43-33-70-46-20-13-12-19-45(43)46)61(88)74-49(32-53(69)83)62(89)79-58(59(86)42-17-8-7-9-18-42)67(94)80-28-14-21-52(80)64(91)78-56(37(3)4)65(92)71-34-55(85)72-47/h7-13,15-20,22-27,33,36-37,39,47-52,56-59,70,81-82,86H,14,21,28-32,34-35H2,1-6H3,(H2,69,83)(H,71,92)(H,72,85)(H,73,90)(H,74,88)(H,75,87)(H,76,93)(H,77,84)(H,78,91)(H,79,89)/b27-24+/t39-,47-,48+,49-,50-,51+,52+,56-,57+,58+,59+/m1/s1
InChI KeyUFPVKIKINBECRQ-CNSCIBEJSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Streptomyces atratusLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.46ALOGPS
logP0.51ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)9.49ChemAxon
pKa (Strongest Basic)-6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area428.08 ŲChemAxon
Rotatable Bond Count15ChemAxon
Refractivity346.94 m³·mol⁻¹ChemAxon
Polarizability139.31 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA026739
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID71266955
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146683158
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Sun C, Yang Z, Zhang C, Liu Z, He J, Liu Q, Zhang T, Ju J, Ma J: Genome Mining of Streptomyces atratus SCSIO ZH16: Discovery of Atratumycin and Identification of Its Biosynthetic Gene Cluster. Org Lett. 2019 Mar 1;21(5):1453-1457. doi: 10.1021/acs.orglett.9b00208. Epub 2019 Feb 12. [PubMed:30746943 ]