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Record Information
Version2.0
Created at2021-01-06 03:22:26 UTC
Updated at2021-07-15 17:29:01 UTC
NP-MRD IDNP0018736
Secondary Accession NumbersNone
Natural Product Identification
Common NameViriplanin A
Provided ByNPAtlasNPAtlas Logo
Description Viriplanin A is found in Actinoplanes and Actinoplanes regularis. Viriplanin A was first documented in 1986 (PMID: 3023268). Based on a literature review very few articles have been published on (2E)-4-[(6-{[6-({6-[(6-{[(1R,10S,12R,13R,21S,23S,24S)-24-{[5-({5-[(4,5-dihydroxy-6-methyloxan-2-yl)oxy]-4,6-dimethyl-4-nitrosooxan-2-yl}oxy)-4-hydroxy-6-methyloxan-2-yl]oxy}-23-(dimethylamino)-4,8,12-trihydroxy-13-(methoxycarbonyl)-1,12-dimethyl-6,17-dioxo-25-oxahexacyclo[19.3.1.0²,¹⁹.0⁵,¹⁸.0⁷,¹⁶.0⁹,¹⁴]Pentacosa-2,4,7(16),8,14,18-hexaen-10-yl]oxy}-4-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2-methyloxan-3-yl}oxy)-2,4-dimethyl-4-nitrosooxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl)oxy]-3-methyl-4-oxobut-2-enoic acid.
Structure
Thumb
Synonyms
ValueSource
(2E)-4-[(6-{[6-({6-[(6-{[(1R,10S,12R,13R,21S,23S,24S)-24-{[5-({5-[(4,5-dihydroxy-6-methyloxan-2-yl)oxy]-4,6-dimethyl-4-nitrosooxan-2-yl}oxy)-4-hydroxy-6-methyloxan-2-yl]oxy}-23-(dimethylamino)-4,8,12-trihydroxy-13-(methoxycarbonyl)-1,12-dimethyl-6,17-dioxo-25-oxahexacyclo[19.3.1.0,.0,.0,.0,]pentacosa-2,4,7(16),8,14,18-hexaen-10-yl]oxy}-4-hydroxy-2-methyloxan-3-yl)oxy]-4-hydroxy-2-methyloxan-3-yl}oxy)-2,4-dimethyl-4-nitrosooxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl)oxy]-3-methyl-4-oxobut-2-enoateGenerator
Chemical FormulaC80H111N3O34
Average Mass1658.7550 Da
Monoisotopic Mass1657.70490 Da
IUPAC Name(2E)-4-{[(2R,3R,4R,6R)-6-{[(2S,3R,4S,6S)-6-{[(2S,3R,4R,6S)-6-{[(2R,3R,4R,6R)-6-{[(1R,10S,12R,13R,21S,23S,24S)-24-{[(2R,4R,5R,6S)-5-{[(2S,4R,5R,6R)-5-{[(2S,4R,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-4,6-dimethyl-4-nitrosooxan-2-yl]oxy}-4-hydroxy-6-methyloxan-2-yl]oxy}-23-(dimethylamino)-4,8,12-trihydroxy-13-(methoxycarbonyl)-1,12-dimethyl-6,17-dioxo-25-oxahexacyclo[19.3.1.0^{2,19}.0^{5,18}.0^{7,16}.0^{9,14}]pentacosa-2,4,7(16),8,14,18-hexaen-10-yl]oxy}-4-hydroxy-2-methyloxan-3-yl]oxy}-4-hydroxy-2-methyloxan-3-yl]oxy}-2,4-dimethyl-4-nitrosooxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-3-methyl-4-oxobut-2-enoic acid
Traditional Name(2E)-4-{[(2R,3R,4R,6R)-6-{[(2S,3R,4S,6S)-6-{[(2S,3R,4R,6S)-6-{[(2R,3R,4R,6R)-6-{[(1R,10S,12R,13R,21S,23S,24S)-24-{[(2R,4R,5R,6S)-5-{[(2S,4R,5R,6R)-5-{[(2S,4R,5R,6S)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-4,6-dimethyl-4-nitrosooxan-2-yl]oxy}-4-hydroxy-6-methyloxan-2-yl]oxy}-23-(dimethylamino)-4,8,12-trihydroxy-13-(methoxycarbonyl)-1,12-dimethyl-6,17-dioxo-25-oxahexacyclo[19.3.1.0^{2,19}.0^{5,18}.0^{7,16}.0^{9,14}]pentacosa-2,4,7(16),8,14,18-hexaen-10-yl]oxy}-4-hydroxy-2-methyloxan-3-yl]oxy}-4-hydroxy-2-methyloxan-3-yl]oxy}-2,4-dimethyl-4-nitrosooxan-3-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-3-methyl-4-oxobut-2-enoic acid
CAS Registry NumberNot Available
SMILES
COC1CC(OC2C(C)OC(CC2(C)N=O)OC2C(C)OC(CC2O)OC2C(C)OC(CC2O)O[C@H]2C[C@@](C)(O)[C@H](C(=O)OC)C3=C2C(O)=C2C(=O)C4=C(O)C=C5C(C[C@H]6C[C@@H]([C@H](OC7CC(O)C(OC8CC(C)(N=O)C(OC9CC(O)C(O)C(C)O9)C(C)O8)C(C)O7)[C@]5(C)O6)N(C)C)=C4C(=O)C2=C3)OC(C)C1OC(=O)C(\C)=C\C(O)=O
InChI Identifier
InChI=1S/C80H111N3O34/c1-30(17-51(89)90)75(95)116-71-35(6)106-56(26-49(71)100-15)114-73-37(8)108-58(29-78(73,10)82-99)111-69-33(4)104-53(24-47(69)87)110-68-32(3)103-52(23-46(68)86)109-50-27-79(11,97)63(76(96)101-16)40-20-41-61(66(93)59(40)50)67(94)62-44(84)21-42-39(60(62)65(41)92)18-38-19-43(83(13)14)74(80(42,12)117-38)115-55-25-48(88)70(34(5)105-55)112-57-28-77(9,81-98)72(36(7)107-57)113-54-22-45(85)64(91)31(2)102-54/h17,20-21,31-38,43,45-50,52-58,63-64,68-74,84-88,91,93,97H,18-19,22-29H2,1-16H3,(H,89,90)/b30-17+/t31?,32?,33?,34?,35?,36?,37?,38-,43-,45?,46?,47?,48?,49?,50-,52?,53?,54?,55?,56?,57?,58?,63-,64?,68?,69?,70?,71?,72?,73?,74-,77?,78?,79+,80+/m0/s1
InChI KeyBYKZIESBUJUBPO-DQCTYACXSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
ActinoplanesNPAtlas
Actinoplanes regularisLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.94ALOGPS
logP3.75ChemAxon
logS-4.3ALOGPS
pKa (Strongest Acidic)3.12ChemAxon
pKa (Strongest Basic)8.52ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count33ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area495.66 ŲChemAxon
Rotatable Bond Count24ChemAxon
Refractivity394.8 m³·mol⁻¹ChemAxon
Polarizability167.56 ųChemAxon
Number of Rings13ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA020843
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID4572740
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5458854
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Hutter K, Baader E, Frobel K, Zeeck A, Bauer K, Gau W, Kurz J, Schroder T, Wunsche C, Karl W, et al.: Viriplanin A, a new anthracycline antibiotic of the nogalamycin group. I. Isolation, characterization, degradation reactions and biological properties. J Antibiot (Tokyo). 1986 Sep;39(9):1193-204. doi: 10.7164/antibiotics.39.1193. [PubMed:3023268 ]