NP-MRD: Showing NP-Card for Jomthonic acid D (NP0018510)

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Record Information

Version

2.0

Created at

2021-01-06 03:07:16 UTC

Updated at

2021-07-15 17:28:25 UTC

NP-MRD ID

NP0018510

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Jomthonic acid D

Provided By

NPAtlas

Description

Jomthonic acid D is also known as jomthonate D. Jomthonic acid D is found in Streptomyces and Streptomyces caniferus. Based on a literature review very few articles have been published on Jomthonic acid D.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242104353D          

 74 74  0  0  0  0            999 V2000
   -8.4364   -4.1253   -1.1921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5785   -3.3154   -0.2585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5962   -2.5753   -0.6947 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3438   -2.5523   -2.1509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8243   -1.7611    0.2320 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8258   -1.0257   -0.1303 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9826   -0.1649    0.7174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3246   -0.1322    1.9260 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9078    0.5301    0.1753 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9958    1.3876    0.8312 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7393    0.6765    1.2269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5229    0.3805    2.4771 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2427    0.2821    0.3726 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4356   -0.3705    0.7919 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9965   -1.9242    0.8572 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5502   -0.3337   -0.1519 C   0  0  1  0  0  0  0  0  0  0  0  0
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    6.1988   -1.5146    0.5205 C   0  0  2  0  0  0  0  0  0  0  0  0
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    6.5389   -2.8756   -0.0040 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7496   -3.4358   -0.7776 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7105   -3.4682    0.3779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7605    2.7318    0.2835 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7252    3.4259    1.1867 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9838    3.5761    0.2126 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7865    3.7082    1.3162 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4854    5.0404   -0.9886 C   0  0  0  0  0  0  0  0  0  0  0  0
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   10.3400   -1.6836   -2.3232 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6122   -0.6025   -0.8687 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8464   -3.8193    1.3135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2474    2.6654   -0.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5388    4.4502    0.8765 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0320    3.3586    2.2707 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1908    2.8236    1.0813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5226    3.2125    2.2287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5652    4.6018    2.1848 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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 10 48  1  1  0  0  0
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 34 71  1  0  0  0  0
 35 72  1  0  0  0  0
 36 73  1  0  0  0  0
 37 74  1  0  0  0  0
M  END

     RDKit          3D

 74 74  0  0  0  0  0  0  0  0999 V2000
   -8.4364   -4.1253   -1.1921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5785   -3.3154   -0.2585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5962   -2.5753   -0.6947 C   0  0  0  0  0  0  0  0  0  0  0  0
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  5 45  1  0
  6 46  1  0
  9 47  1  0
 10 48  1  1
 14 49  1  1
 15 50  1  0
 15 51  1  0
 15 52  1  0
 16 53  1  6
 17 54  1  0
 17 55  1  0
 17 56  1  0
 20 57  1  0
 21 58  1  1
 22 59  1  0
 22 60  1  0
 23 61  1  0
 23 62  1  0
 25 63  1  0
 25 64  1  0
 29 65  1  0
 30 66  1  6
 31 67  1  0
 31 68  1  0
 31 69  1  0
 33 70  1  0
 34 71  1  0
 35 72  1  0
 36 73  1  0
 37 74  1  0
M  END


  Mrv1652306242104353D          

 74 74  0  0  0  0            999 V2000
   -8.4364   -4.1253   -1.1921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5785   -3.3154   -0.2585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5962   -2.5753   -0.6947 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3438   -2.5523   -2.1509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8243   -1.7611    0.2320 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8258   -1.0257   -0.1303 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9826   -0.1649    0.7174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3246   -0.1322    1.9260 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9078    0.5301    0.1753 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9958    1.3876    0.8312 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7393    0.6765    1.2269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5229    0.3805    2.4771 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2427    0.2821    0.3726 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4356   -0.3705    0.7919 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9965   -1.9242    0.8572 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5502   -0.3337   -0.1519 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9508    1.0604   -0.5687 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7787   -0.8976    0.5357 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7035   -1.2879    1.6931 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0389   -0.9798   -0.1515 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1988   -1.5146    0.5205 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3165   -0.5706    0.6993 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.9632    0.0367   -0.4928 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.5484   -0.9578   -1.4237 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9417   -1.0810   -1.5394 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.7633   -1.6577   -2.0937 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5389   -2.8756   -0.0040 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7496   -3.4358   -0.7776 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7105   -3.4682    0.3779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7605    2.7318    0.2835 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7252    3.4259    1.1867 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9838    3.5761    0.2126 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7865    3.7082    1.3162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9465    4.5080    1.2985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2953    5.1770    0.1397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4854    5.0404   -0.9886 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3396    4.2410   -0.9317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6665   -5.0687   -0.6328 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3032   -3.5845   -1.5412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8373   -4.4521   -2.0902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7726   -3.3325    0.8092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7633   -3.4316   -2.4253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3335   -2.5509   -2.7106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8654   -1.6119   -2.5119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0729   -1.7470    1.2877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5494   -1.0370   -1.1857 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7399    0.4133   -0.8836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4642    1.6116    1.8723 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6415   -0.2210    1.8330 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9438   -2.4589    0.9030 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4381   -2.0300    1.7893 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4385   -2.1258   -0.0555 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3072   -0.9952   -1.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3875    1.7985    0.0275 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7065    1.1271   -1.6746 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0229    1.2237   -0.4376 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0528   -0.6254   -1.1284 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8282   -1.6984    1.6191 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0229    0.2752    1.4091 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1610   -1.0537    1.2938 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7824    0.7479   -0.2409 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1884    0.5867   -1.0991 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3400   -1.6836   -2.3232 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6122   -0.6025   -0.8687 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8464   -3.8193    1.3135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2474    2.6654   -0.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5388    4.4502    0.8765 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0320    3.3586    2.2707 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1908    2.8236    1.0813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5226    3.2125    2.2287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5652    4.6018    2.1848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1741    5.7772    0.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7842    5.5732   -1.8779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7058    4.1284   -1.8067 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
 21 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 10 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 32  1  0  0  0  0
  1 38  1  0  0  0  0
  1 39  1  0  0  0  0
  1 40  1  0  0  0  0
  2 41  1  0  0  0  0
  4 42  1  0  0  0  0
  4 43  1  0  0  0  0
  4 44  1  0  0  0  0
  5 45  1  0  0  0  0
  6 46  1  0  0  0  0
  9 47  1  0  0  0  0
 10 48  1  1  0  0  0
 14 49  1  1  0  0  0
 15 50  1  0  0  0  0
 15 51  1  0  0  0  0
 15 52  1  0  0  0  0
 16 53  1  6  0  0  0
 17 54  1  0  0  0  0
 17 55  1  0  0  0  0
 17 56  1  0  0  0  0
 20 57  1  0  0  0  0
 21 58  1  1  0  0  0
 22 59  1  0  0  0  0
 22 60  1  0  0  0  0
 23 61  1  0  0  0  0
 23 62  1  0  0  0  0
 25 63  1  0  0  0  0
 25 64  1  0  0  0  0
 29 65  1  0  0  0  0
 30 66  1  6  0  0  0
 31 67  1  0  0  0  0
 31 68  1  0  0  0  0
 31 69  1  0  0  0  0
 33 70  1  0  0  0  0
 34 71  1  0  0  0  0
 35 72  1  0  0  0  0
 36 73  1  0  0  0  0
 37 74  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0018510

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@]([H])(N([H])C(=O)[C@]([H])(C([H])([H])[H])[C@@]([H])(OC(=O)[C@]([H])(N([H])C(=O)C(\[H])=C(/[H])\C(=C(/[H])C([H])([H])[H])\C([H])([H])[H])[C@@]([H])(C1=C([H])C([H])=C([H])C([H])=C1[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])C([H])([H])C(=O)N([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C27H37N3O7/c1-6-16(2)12-15-23(32)30-24(18(4)20-10-8-7-9-11-20)27(36)37-19(5)17(3)25(33)29-21(26(34)35)13-14-22(28)31/h6-12,15,17-19,21,24H,13-14H2,1-5H3,(H2,28,31)(H,29,33)(H,30,32)(H,34,35)/b15-12+,16-6+/t17-,18-,19+,21-,24-/m1/s1

> <INCHI_KEY>
JWYOWJRAJBVKBT-NEKUXHKKSA-N

> <FORMULA>
C27H37N3O7

> <MOLECULAR_WEIGHT>
515.607

> <EXACT_MASS>
515.263150543

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
56.4348825508071

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-4-carbamoyl-2-[(2R,3S)-2-methyl-3-{[(2R,3R)-2-[(2E,4E)-4-methylhexa-2,4-dienamido]-3-phenylbutanoyl]oxy}butanamido]butanoic acid

> <ALOGPS_LOGP>
2.45

> <JCHEM_LOGP>
2.2987785166666663

> <ALOGPS_LOGS>
-5.05

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.822394121600116

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.59213471607759

> <JCHEM_PKA_STRONGEST_BASIC>
-0.3110478593938798

> <JCHEM_POLAR_SURFACE_AREA>
164.89

> <JCHEM_REFRACTIVITY>
138.40989999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.56e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-4-carbamoyl-2-[(2R,3S)-2-methyl-3-{[(2R,3R)-2-[(2E,4E)-4-methylhexa-2,4-dienamido]-3-phenylbutanoyl]oxy}butanamido]butanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 74 74  0  0  0  0  0  0  0  0999 V2000
   -8.4364   -4.1253   -1.1921 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5785   -3.3154   -0.2585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5962   -2.5753   -0.6947 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3438   -2.5523   -2.1509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8243   -1.7611    0.2320 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8258   -1.0257   -0.1303 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9826   -0.1649    0.7174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3246   -0.1322    1.9260 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9078    0.5301    0.1753 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9958    1.3876    0.8312 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7393    0.6765    1.2269 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5229    0.3805    2.4771 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2427    0.2821    0.3726 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4356   -0.3705    0.7919 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9965   -1.9242    0.8572 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5502   -0.3337   -0.1519 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9508    1.0604   -0.5687 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7787   -0.8976    0.5357 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7035   -1.2879    1.6931 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0389   -0.9798   -0.1515 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1988   -1.5146    0.5205 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3165   -0.5706    0.6993 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9632    0.0367   -0.4928 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5484   -0.9578   -1.4237 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9417   -1.0810   -1.5394 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.7633   -1.6577   -2.0937 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5389   -2.8756   -0.0040 C   0  0  0  0  0  0  0  0  0  0  0  0
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    7.7105   -3.4682    0.3779 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7605    2.7318    0.2835 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7252    3.4259    1.1867 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.7865    3.7082    1.3162 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.4854    5.0404   -0.9886 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3396    4.2410   -0.9317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6665   -5.0687   -0.6328 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3032   -3.5845   -1.5412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8373   -4.4521   -2.0902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7726   -3.3325    0.8092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7633   -3.4316   -2.4253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3335   -2.5509   -2.7106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8654   -1.6119   -2.5119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0729   -1.7470    1.2877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5494   -1.0370   -1.1857 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7399    0.4133   -0.8836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4642    1.6116    1.8723 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6415   -0.2210    1.8330 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9438   -2.4589    0.9030 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4381   -2.0300    1.7893 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4385   -2.1258   -0.0555 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3072   -0.9952   -1.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3875    1.7985    0.0275 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7065    1.1271   -1.6746 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0229    1.2237   -0.4376 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.8282   -1.6984    1.6191 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0229    0.2752    1.4091 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1610   -1.0537    1.2938 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7824    0.7479   -0.2409 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1884    0.5867   -1.0991 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3400   -1.6836   -2.3232 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6122   -0.6025   -0.8687 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8464   -3.8193    1.3135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2474    2.6654   -0.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5388    4.4502    0.8765 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.7842    5.5732   -1.8779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7058    4.1284   -1.8067 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  3  5  1  0
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  6  7  1  0
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 32 33  2  0
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 37 32  1  0
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 35 72  1  0
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 37 74  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -8.436  -4.125  -1.192  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.579  -3.315  -0.259  0.00  0.00           C+0
HETATM    3  C   UNK     0      -6.596  -2.575  -0.695  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.344  -2.552  -2.151  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.824  -1.761   0.232  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.826  -1.026  -0.130  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.983  -0.165   0.717  0.00  0.00           C+0
HETATM    8  O   UNK     0      -4.325  -0.132   1.926  0.00  0.00           O+0
HETATM    9  N   UNK     0      -2.908   0.530   0.175  0.00  0.00           N+0
HETATM   10  C   UNK     0      -1.996   1.388   0.831  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.739   0.677   1.227  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.523   0.381   2.477  0.00  0.00           O+0
HETATM   13  O   UNK     0       0.243   0.282   0.373  0.00  0.00           O+0
HETATM   14  C   UNK     0       1.436  -0.371   0.792  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.997  -1.924   0.857  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.550  -0.334  -0.152  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.951   1.060  -0.569  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.779  -0.898   0.536  0.00  0.00           C+0
HETATM   19  O   UNK     0       3.704  -1.288   1.693  0.00  0.00           O+0
HETATM   20  N   UNK     0       5.039  -0.980  -0.152  0.00  0.00           N+0
HETATM   21  C   UNK     0       6.199  -1.515   0.521  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.316  -0.571   0.699  0.00  0.00           C+0
HETATM   23  C   UNK     0       7.963   0.037  -0.493  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.548  -0.958  -1.424  0.00  0.00           C+0
HETATM   25  N   UNK     0       9.942  -1.081  -1.539  0.00  0.00           N+0
HETATM   26  O   UNK     0       7.763  -1.658  -2.094  0.00  0.00           O+0
HETATM   27  C   UNK     0       6.539  -2.876  -0.004  0.00  0.00           C+0
HETATM   28  O   UNK     0       5.750  -3.436  -0.778  0.00  0.00           O+0
HETATM   29  O   UNK     0       7.710  -3.468   0.378  0.00  0.00           O+0
HETATM   30  C   UNK     0      -1.761   2.732   0.284  0.00  0.00           C+0
HETATM   31  C   UNK     0      -0.725   3.426   1.187  0.00  0.00           C+0
HETATM   32  C   UNK     0      -2.984   3.576   0.213  0.00  0.00           C+0
HETATM   33  C   UNK     0      -3.787   3.708   1.316  0.00  0.00           C+0
HETATM   34  C   UNK     0      -4.947   4.508   1.299  0.00  0.00           C+0
HETATM   35  C   UNK     0      -5.295   5.177   0.140  0.00  0.00           C+0
HETATM   36  C   UNK     0      -4.485   5.040  -0.989  0.00  0.00           C+0
HETATM   37  C   UNK     0      -3.340   4.241  -0.932  0.00  0.00           C+0
HETATM   38  H   UNK     0      -8.666  -5.069  -0.633  0.00  0.00           H+0
HETATM   39  H   UNK     0      -9.303  -3.584  -1.541  0.00  0.00           H+0
HETATM   40  H   UNK     0      -7.837  -4.452  -2.090  0.00  0.00           H+0
HETATM   41  H   UNK     0      -7.773  -3.333   0.809  0.00  0.00           H+0
HETATM   42  H   UNK     0      -5.763  -3.432  -2.425  0.00  0.00           H+0
HETATM   43  H   UNK     0      -7.333  -2.551  -2.711  0.00  0.00           H+0
HETATM   44  H   UNK     0      -5.865  -1.612  -2.512  0.00  0.00           H+0
HETATM   45  H   UNK     0      -6.073  -1.747   1.288  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.549  -1.037  -1.186  0.00  0.00           H+0
HETATM   47  H   UNK     0      -2.740   0.413  -0.884  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.464   1.612   1.872  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.642  -0.221   1.833  0.00  0.00           H+0
HETATM   50  H   UNK     0       1.944  -2.459   0.903  0.00  0.00           H+0
HETATM   51  H   UNK     0       0.438  -2.030   1.789  0.00  0.00           H+0
HETATM   52  H   UNK     0       0.439  -2.126  -0.056  0.00  0.00           H+0
HETATM   53  H   UNK     0       2.307  -0.995  -1.032  0.00  0.00           H+0
HETATM   54  H   UNK     0       2.388   1.799   0.028  0.00  0.00           H+0
HETATM   55  H   UNK     0       2.707   1.127  -1.675  0.00  0.00           H+0
HETATM   56  H   UNK     0       4.023   1.224  -0.438  0.00  0.00           H+0
HETATM   57  H   UNK     0       5.053  -0.625  -1.128  0.00  0.00           H+0
HETATM   58  H   UNK     0       5.828  -1.698   1.619  0.00  0.00           H+0
HETATM   59  H   UNK     0       7.023   0.275   1.409  0.00  0.00           H+0
HETATM   60  H   UNK     0       8.161  -1.054   1.294  0.00  0.00           H+0
HETATM   61  H   UNK     0       8.782   0.748  -0.241  0.00  0.00           H+0
HETATM   62  H   UNK     0       7.188   0.587  -1.099  0.00  0.00           H+0
HETATM   63  H   UNK     0      10.340  -1.684  -2.323  0.00  0.00           H+0
HETATM   64  H   UNK     0      10.612  -0.603  -0.869  0.00  0.00           H+0
HETATM   65  H   UNK     0       7.846  -3.819   1.313  0.00  0.00           H+0
HETATM   66  H   UNK     0      -1.247   2.665  -0.711  0.00  0.00           H+0
HETATM   67  H   UNK     0      -0.539   4.450   0.877  0.00  0.00           H+0
HETATM   68  H   UNK     0      -1.032   3.359   2.271  0.00  0.00           H+0
HETATM   69  H   UNK     0       0.191   2.824   1.081  0.00  0.00           H+0
HETATM   70  H   UNK     0      -3.523   3.212   2.229  0.00  0.00           H+0
HETATM   71  H   UNK     0      -5.565   4.602   2.185  0.00  0.00           H+0
HETATM   72  H   UNK     0      -6.174   5.777   0.116  0.00  0.00           H+0
HETATM   73  H   UNK     0      -4.784   5.573  -1.878  0.00  0.00           H+0
HETATM   74  H   UNK     0      -2.706   4.128  -1.807  0.00  0.00           H+0
CONECT    1    2   38   39   40                                             
CONECT    2    1    3   41                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3   42   43   44                                             
CONECT    5    3    6   45                                                  
CONECT    6    5    7   46                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   47                                                  
CONECT   10    9   11   30   48                                             
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16   49                                             
CONECT   15   14   50   51   52                                             
CONECT   16   14   17   18   53                                             
CONECT   17   16   54   55   56                                             
CONECT   18   16   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   57                                                  
CONECT   21   20   22   27   58                                             
CONECT   22   21   23   59   60                                             
CONECT   23   22   24   61   62                                             
CONECT   24   23   25   26                                                  
CONECT   25   24   63   64                                                  
CONECT   26   24                                                            
CONECT   27   21   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   65                                                       
CONECT   30   10   31   32   66                                             
CONECT   31   30   67   68   69                                             
CONECT   32   30   33   37                                                  
CONECT   33   32   34   70                                                  
CONECT   34   33   35   71                                                  
CONECT   35   34   36   72                                                  
CONECT   36   35   37   73                                                  
CONECT   37   36   32   74                                                  
CONECT   38    1                                                            
CONECT   39    1                                                            
CONECT   40    1                                                            
CONECT   41    2                                                            
CONECT   42    4                                                            
CONECT   43    4                                                            
CONECT   44    4                                                            
CONECT   45    5                                                            
CONECT   46    6                                                            
CONECT   47    9                                                            
CONECT   48   10                                                            
CONECT   49   14                                                            
CONECT   50   15                                                            
CONECT   51   15                                                            
CONECT   52   15                                                            
CONECT   53   16                                                            
CONECT   54   17                                                            
CONECT   55   17                                                            
CONECT   56   17                                                            
CONECT   57   20                                                            
CONECT   58   21                                                            
CONECT   59   22                                                            
CONECT   60   22                                                            
CONECT   61   23                                                            
CONECT   62   23                                                            
CONECT   63   25                                                            
CONECT   64   25                                                            
CONECT   65   29                                                            
CONECT   66   30                                                            
CONECT   67   31                                                            
CONECT   68   31                                                            
CONECT   69   31                                                            
CONECT   70   33                                                            
CONECT   71   34                                                            
CONECT   72   35                                                            
CONECT   73   36                                                            
CONECT   74   37                                                            
MASTER        0    0    0    0    0    0    0    0   74    0  148    0
END

RDKit          3D

74 74  0  0  0  0  0  0  0  0999 V2000
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    4.0229    1.2237   -0.4376 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0528   -0.6254   -1.1284 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8282   -1.6984    1.6191 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0229    0.2752    1.4091 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1610   -1.0537    1.2938 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7824    0.7479   -0.2409 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1884    0.5867   -1.0991 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3400   -1.6836   -2.3232 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6122   -0.6025   -0.8687 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8464   -3.8193    1.3135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2474    2.6654   -0.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5388    4.4502    0.8765 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0320    3.3586    2.2707 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1908    2.8236    1.0813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5226    3.2125    2.2287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5652    4.6018    2.1848 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1741    5.7772    0.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7842    5.5732   -1.8779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7058    4.1284   -1.8067 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  2  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  2  0
 21 27  1  0
 27 28  2  0
 27 29  1  0
 10 30  1  0
 30 31  1  0
 30 32  1  0
 32 33  2  0
 33 34  1  0
 34 35  2  0
 35 36  1  0
 36 37  2  0
 37 32  1  0
  1 38  1  0
  1 39  1  0
  1 40  1  0
  2 41  1  0
  4 42  1  0
  4 43  1  0
  4 44  1  0
  5 45  1  0
  6 46  1  0
  9 47  1  0
 10 48  1  1
 14 49  1  1
 15 50  1  0
 15 51  1  0
 15 52  1  0
 16 53  1  6
 17 54  1  0
 17 55  1  0
 17 56  1  0
 20 57  1  0
 21 58  1  1
 22 59  1  0
 22 60  1  0
 23 61  1  0
 23 62  1  0
 25 63  1  0
 25 64  1  0
 29 65  1  0
 30 66  1  6
 31 67  1  0
 31 68  1  0
 31 69  1  0
 33 70  1  0
 34 71  1  0
 35 72  1  0
 36 73  1  0
 37 74  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Jomthonate D	Generator
2-({1-hydroxy-3-[(2-{[(2E,4E)-1-hydroxy-4-methylhexa-2,4-dien-1-ylidene]amino}-3-phenylbutanoyl)oxy]-2-methylbutylidene}amino)-4-(C-hydroxycarbonimidoyl)butanoate	Generator

Chemical Formula

C₂₇H₃₇N₃O₇

Average Mass

515.6070 Da

Monoisotopic Mass

515.26315 Da

IUPAC Name

(2R)-4-carbamoyl-2-[(2R,3S)-2-methyl-3-{[(2R,3R)-2-[(2E,4E)-4-methylhexa-2,4-dienamido]-3-phenylbutanoyl]oxy}butanamido]butanoic acid

Traditional Name

(2R)-4-carbamoyl-2-[(2R,3S)-2-methyl-3-{[(2R,3R)-2-[(2E,4E)-4-methylhexa-2,4-dienamido]-3-phenylbutanoyl]oxy}butanamido]butanoic acid

CAS Registry Number

Not Available

SMILES

C\C=C(/C)\C=C\C(=O)NC(C(C)C1=CC=CC=C1)C(=O)OC(C)C(C)C(=O)NC(CCC(N)=O)C(O)=O

InChI Identifier

InChI=1S/C27H37N3O7/c1-6-16(2)12-15-23(32)30-24(18(4)20-10-8-7-9-11-20)27(36)37-19(5)17(3)25(33)29-21(26(34)35)13-14-22(28)31/h6-12,15,17-19,21,24H,13-14H2,1-5H3,(H2,28,31)(H,29,33)(H,30,32)(H,34,35)/b15-12+,16-6+

InChI Key

JWYOWJRAJBVKBT-NEKUXHKKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	30065171
Streptomyces caniferus	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.45	ALOGPS
logP	2.3	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	3.59	ChemAxon
pKa (Strongest Basic)	-0.31	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	164.89 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	138.41 m³·mol⁻¹	ChemAxon
Polarizability	56.43 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA023424

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

71048485

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139590703

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Jomthonic acid D (NP0018510)

MOL for NP0018510 (Jomthonic acid D)

3D MOL for NP0018510 (Jomthonic acid D)

3D SDF for NP0018510 (Jomthonic acid D)

3D-SDF for NP0018510 (Jomthonic acid D)

PDB for NP0018510 (Jomthonic acid D)

3D PDB for NP0018510 (Jomthonic acid D)

SMILES for NP0018510 (Jomthonic acid D)

INCHI for NP0018510 (Jomthonic acid D)

Structure for NP0018510 (Jomthonic acid D)

3D Structure for NP0018510 (Jomthonic acid D)