NP-MRD: Showing NP-Card for 3-hydroxy-K252d (NP0018112)

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Record Information

Version

2.0

Created at

2021-01-06 02:42:29 UTC

Updated at

2021-07-15 17:27:20 UTC

NP-MRD ID

NP0018112

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-hydroxy-K252d

Provided By

NPAtlas

Description

3-hydroxy-K252d is found in Streptomyces. 3-hydroxy-K252d was first documented in 2018 (PMID: 29772796). Based on a literature review very few articles have been published on (2R,3R,4R,5R,6S)-2-{7,12-dihydroxy-3,13,23-triazahexacyclo[14.7.0.0²,¹⁰.0⁴,⁹.0¹¹,¹⁵.0¹⁷,²²]Tricosa-1,4(9),5,7,10,12,15,17,19,21-decaen-3-yl}-6-methyloxane-3,4,5-triol.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242104303D          

 58 64  0  0  0  0            999 V2000
   -3.5963   -2.4741   -1.3979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4856   -1.2441   -0.4812 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -1.7743   -0.0024    0.4485 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7705    0.9343    0.0492 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8760    2.2621   -0.1926 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9934    3.0782   -0.1891 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5411    6.3051   -1.0612 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3830    2.8057   -0.4952 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2737    1.7431   -0.4336 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
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  4 30  1  0  0  0  0
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M  END

     RDKit          3D

 58 64  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306242104303D          

 58 64  0  0  0  0            999 V2000
   -3.5963   -2.4741   -1.3979 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5519    3.9051   -1.2188 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9307    0.4704    1.2517 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6311    1.3559    2.2729 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4351   -0.8266    1.9871 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3662   -1.4740    2.5614 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9586   -1.6975    0.8648 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3660   -1.6096    0.8607 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1364   -2.1768   -2.3686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9936   -3.2775   -0.9722 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6477   -2.7316   -1.5971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1379   -0.4756   -0.9564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2091   -0.6563    1.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9447    2.6242    0.0209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8152    5.0016   -0.4530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6191    6.6362   -1.9972 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4079    4.5934   -1.0118 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2105   -1.9828   -0.4248 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3807   -4.3460   -0.0647 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.0636   -2.1907    0.4566 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3804    0.3258    0.0910 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1268    0.0593   -1.6704 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8072    2.5186   -1.3629 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.7281    1.1538    2.5841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2253   -0.5452    2.6946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1735   -1.1904    3.4855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6587   -2.7661    1.0056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7188   -2.5335    0.6834 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
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 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 15 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
  4 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34  2  1  0  0  0  0
 25  5  1  0  0  0  0
 12  6  1  0  0  0  0
 25 13  1  0  0  0  0
 28 14  1  0  0  0  0
 24 16  1  0  0  0  0
 22 17  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
  1 38  1  0  0  0  0
  2 39  1  6  0  0  0
  4 40  1  1  0  0  0
  7 41  1  0  0  0  0
  8 42  1  0  0  0  0
 10 43  1  0  0  0  0
 11 44  1  0  0  0  0
 18 45  1  0  0  0  0
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 26 51  1  0  0  0  0
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 30 53  1  6  0  0  0
 31 54  1  0  0  0  0
 32 55  1  1  0  0  0
 33 56  1  0  0  0  0
 34 57  1  1  0  0  0
 35 58  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0018112

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C([H])C([H])=C2N(C3=C4N([H])C5=C([H])C([H])=C([H])C([H])=C5C4=C4C(C(=O)N([H])C4([H])[H])=C3C2=C1[H])[C@]1([H])O[C@@]([H])(C([H])([H])[H])[C@]([H])(O[H])[C@@]([H])(O[H])[C@@]1([H])O[H]

> <INCHI_IDENTIFIER>
InChI=1S/C26H23N3O6/c1-10-22(31)23(32)24(33)26(35-10)29-16-7-6-11(30)8-13(16)18-19-14(9-27-25(19)34)17-12-4-2-3-5-15(12)28-20(17)21(18)29/h2-8,10,22-24,26,28,30-33H,9H2,1H3,(H,27,34)/t10-,22-,23+,24+,26+/m0/s1

> <INCHI_KEY>
JBELEMSZEPUNJB-SCZMJFPFSA-N

> <FORMULA>
C26H23N3O6

> <MOLECULAR_WEIGHT>
473.485

> <EXACT_MASS>
473.158685473

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
50.21946663807074

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
7-hydroxy-3-[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]-3,13,23-triazahexacyclo[14.7.0.0^{2,10}.0^{4,9}.0^{11,15}.0^{17,22}]tricosa-1,4,6,8,10,15,17,19,21-nonaen-12-one

> <ALOGPS_LOGP>
1.79

> <JCHEM_LOGP>
1.5871277853333334

> <ALOGPS_LOGS>
-3.73

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.355496599296654

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.309466272910623

> <JCHEM_PKA_STRONGEST_BASIC>
-1.4770175501316918

> <JCHEM_POLAR_SURFACE_AREA>
139.97

> <JCHEM_REFRACTIVITY>
126.41210000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.80e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7-hydroxy-3-[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]-3,13,23-triazahexacyclo[14.7.0.0^{2,10}.0^{4,9}.0^{11,15}.0^{17,22}]tricosa-1,4,6,8,10,15,17,19,21-nonaen-12-one

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 58 64  0  0  0  0  0  0  0  0999 V2000
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    0.8773   -1.8426    0.2642 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2472   -0.5858   -0.0012 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5587    0.6255   -0.1068 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7825    0.6423   -0.7925 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9241    2.0224   -1.1015 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.6490    2.6875   -1.0079 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5519    3.9051   -1.2188 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9307    0.4704    1.2517 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6311    1.3559    2.2729 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.3662   -1.4740    2.5614 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.3660   -1.6096    0.8607 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.2091   -0.6563    1.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9447    2.6242    0.0209 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.6191    6.6362   -1.9972 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.2105   -1.9828   -0.4248 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3807   -4.3460   -0.0647 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.8072    2.5186   -1.3629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8292    0.7056    0.6628 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.1735   -1.1904    3.4855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6587   -2.7661    1.0056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7188   -2.5335    0.6834 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
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 17 18  2  0
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 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 15 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  2  0
  4 30  1  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 32 34  1  0
 34 35  1  0
 34  2  1  0
 25  5  1  0
 12  6  1  0
 25 13  1  0
 28 14  1  0
 24 16  1  0
 22 17  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
  2 39  1  6
  4 40  1  1
  7 41  1  0
  8 42  1  0
 10 43  1  0
 11 44  1  0
 18 45  1  0
 19 46  1  0
 20 47  1  0
 21 48  1  0
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 26 50  1  0
 26 51  1  0
 27 52  1  0
 30 53  1  6
 31 54  1  0
 32 55  1  1
 33 56  1  0
 34 57  1  1
 35 58  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -3.596  -2.474  -1.398  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.486  -1.244  -0.481  0.00  0.00           C+0
HETATM    3  O   UNK     0      -2.188  -0.835  -0.547  0.00  0.00           O+0
HETATM    4  C   UNK     0      -1.774  -0.002   0.449  0.00  0.00           C+0
HETATM    5  N   UNK     0      -0.771   0.934   0.049  0.00  0.00           N+0
HETATM    6  C   UNK     0      -0.876   2.262  -0.193  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.993   3.078  -0.189  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.894   4.418  -0.475  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.673   4.938  -0.765  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.541   6.305  -1.061  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.471   4.144  -0.779  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.383   2.806  -0.495  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.274   1.743  -0.434  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.656   1.704  -0.654  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.324   0.511  -0.544  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.636  -0.629  -0.223  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.072  -1.941  -0.079  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.314  -2.521  -0.188  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.416  -3.885   0.018  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.302  -4.670   0.330  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.063  -4.026   0.428  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.953  -2.677   0.225  0.00  0.00           C+0
HETATM   23  N   UNK     0       0.877  -1.843   0.264  0.00  0.00           N+0
HETATM   24  C   UNK     0       1.247  -0.586  -0.001  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.559   0.626  -0.107  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.782   0.642  -0.793  0.00  0.00           C+0
HETATM   27  N   UNK     0       4.924   2.022  -1.101  0.00  0.00           N+0
HETATM   28  C   UNK     0       3.649   2.688  -1.008  0.00  0.00           C+0
HETATM   29  O   UNK     0       3.552   3.905  -1.219  0.00  0.00           O+0
HETATM   30  C   UNK     0      -2.931   0.470   1.252  0.00  0.00           C+0
HETATM   31  O   UNK     0      -2.631   1.356   2.273  0.00  0.00           O+0
HETATM   32  C   UNK     0      -3.435  -0.827   1.987  0.00  0.00           C+0
HETATM   33  O   UNK     0      -2.366  -1.474   2.561  0.00  0.00           O+0
HETATM   34  C   UNK     0      -3.959  -1.698   0.865  0.00  0.00           C+0
HETATM   35  O   UNK     0      -5.366  -1.610   0.861  0.00  0.00           O+0
HETATM   36  H   UNK     0      -3.136  -2.177  -2.369  0.00  0.00           H+0
HETATM   37  H   UNK     0      -2.994  -3.277  -0.972  0.00  0.00           H+0
HETATM   38  H   UNK     0      -4.648  -2.732  -1.597  0.00  0.00           H+0
HETATM   39  H   UNK     0      -4.138  -0.476  -0.956  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.209  -0.656   1.215  0.00  0.00           H+0
HETATM   41  H   UNK     0      -2.945   2.624   0.021  0.00  0.00           H+0
HETATM   42  H   UNK     0      -2.815   5.002  -0.453  0.00  0.00           H+0
HETATM   43  H   UNK     0      -0.619   6.636  -1.997  0.00  0.00           H+0
HETATM   44  H   UNK     0       1.408   4.593  -1.012  0.00  0.00           H+0
HETATM   45  H   UNK     0       5.210  -1.983  -0.425  0.00  0.00           H+0
HETATM   46  H   UNK     0       5.381  -4.346  -0.065  0.00  0.00           H+0
HETATM   47  H   UNK     0       3.415  -5.731   0.485  0.00  0.00           H+0
HETATM   48  H   UNK     0       1.197  -4.628   0.668  0.00  0.00           H+0
HETATM   49  H   UNK     0      -0.064  -2.191   0.457  0.00  0.00           H+0
HETATM   50  H   UNK     0       5.380   0.326   0.091  0.00  0.00           H+0
HETATM   51  H   UNK     0       5.127   0.059  -1.670  0.00  0.00           H+0
HETATM   52  H   UNK     0       5.807   2.519  -1.363  0.00  0.00           H+0
HETATM   53  H   UNK     0      -3.829   0.706   0.663  0.00  0.00           H+0
HETATM   54  H   UNK     0      -1.728   1.154   2.584  0.00  0.00           H+0
HETATM   55  H   UNK     0      -4.225  -0.545   2.695  0.00  0.00           H+0
HETATM   56  H   UNK     0      -2.174  -1.190   3.486  0.00  0.00           H+0
HETATM   57  H   UNK     0      -3.659  -2.766   1.006  0.00  0.00           H+0
HETATM   58  H   UNK     0      -5.719  -2.534   0.683  0.00  0.00           H+0
CONECT    1    2   36   37   38                                             
CONECT    2    1    3   34   39                                             
CONECT    3    2    4                                                       
CONECT    4    3    5   30   40                                             
CONECT    5    4    6   25                                                  
CONECT    6    5    7   12                                                  
CONECT    7    6    8   41                                                  
CONECT    8    7    9   42                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9   43                                                       
CONECT   11    9   12   44                                                  
CONECT   12   11   13    6                                                  
CONECT   13   12   14   25                                                  
CONECT   14   13   15   28                                                  
CONECT   15   14   16   26                                                  
CONECT   16   15   17   24                                                  
CONECT   17   16   18   22                                                  
CONECT   18   17   19   45                                                  
CONECT   19   18   20   46                                                  
CONECT   20   19   21   47                                                  
CONECT   21   20   22   48                                                  
CONECT   22   21   23   17                                                  
CONECT   23   22   24   49                                                  
CONECT   24   23   25   16                                                  
CONECT   25   24    5   13                                                  
CONECT   26   15   27   50   51                                             
CONECT   27   26   28   52                                                  
CONECT   28   27   29   14                                                  
CONECT   29   28                                                            
CONECT   30    4   31   32   53                                             
CONECT   31   30   54                                                       
CONECT   32   30   33   34   55                                             
CONECT   33   32   56                                                       
CONECT   34   32   35    2   57                                             
CONECT   35   34   58                                                       
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    2                                                            
CONECT   40    4                                                            
CONECT   41    7                                                            
CONECT   42    8                                                            
CONECT   43   10                                                            
CONECT   44   11                                                            
CONECT   45   18                                                            
CONECT   46   19                                                            
CONECT   47   20                                                            
CONECT   48   21                                                            
CONECT   49   23                                                            
CONECT   50   26                                                            
CONECT   51   26                                                            
CONECT   52   27                                                            
CONECT   53   30                                                            
CONECT   54   31                                                            
CONECT   55   32                                                            
CONECT   56   33                                                            
CONECT   57   34                                                            
CONECT   58   35                                                            
MASTER        0    0    0    0    0    0    0    0   58    0  128    0
END

RDKit          3D

58 64  0  0  0  0  0  0  0  0999 V2000
   -3.5963   -2.4741   -1.3979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4856   -1.2441   -0.4812 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1885   -0.8348   -0.5471 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7743   -0.0024    0.4485 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7705    0.9343    0.0492 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8760    2.2621   -0.1926 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9934    3.0782   -0.1891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8936    4.4176   -0.4749 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6727    4.9376   -0.7654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5411    6.3051   -1.0612 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4709    4.1445   -0.7792 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3830    2.8057   -0.4952 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2737    1.7431   -0.4336 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6563    1.7038   -0.6544 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3237    0.5109   -0.5442 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6362   -0.6287   -0.2227 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0721   -1.9406   -0.0788 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3145   -2.5206   -0.1880 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4157   -3.8852    0.0184 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3018   -4.6700    0.3296 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0629   -4.0256    0.4277 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9532   -2.6768    0.2252 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8773   -1.8426    0.2642 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2472   -0.5858   -0.0012 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5587    0.6255   -0.1068 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7825    0.6423   -0.7925 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9241    2.0224   -1.1015 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.6490    2.6875   -1.0079 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5519    3.9051   -1.2188 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9307    0.4704    1.2517 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6311    1.3559    2.2729 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4351   -0.8266    1.9871 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3662   -1.4740    2.5614 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9586   -1.6975    0.8648 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3660   -1.6096    0.8607 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1364   -2.1768   -2.3686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9936   -3.2775   -0.9722 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6477   -2.7316   -1.5971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1379   -0.4756   -0.9564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2091   -0.6563    1.2149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9447    2.6242    0.0209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8152    5.0016   -0.4530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6191    6.6362   -1.9972 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4079    4.5934   -1.0118 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2105   -1.9828   -0.4248 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3807   -4.3460   -0.0647 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4152   -5.7313    0.4845 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1972   -4.6279    0.6682 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0636   -2.1907    0.4566 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3804    0.3258    0.0910 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1268    0.0593   -1.6704 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8072    2.5186   -1.3629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8292    0.7056    0.6628 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7281    1.1538    2.5841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2253   -0.5452    2.6946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1735   -1.1904    3.4855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6587   -2.7661    1.0056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7188   -2.5335    0.6834 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 15 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  2  0
  4 30  1  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 32 34  1  0
 34 35  1  0
 34  2  1  0
 25  5  1  0
 12  6  1  0
 25 13  1  0
 28 14  1  0
 24 16  1  0
 22 17  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
  2 39  1  6
  4 40  1  1
  7 41  1  0
  8 42  1  0
 10 43  1  0
 11 44  1  0
 18 45  1  0
 19 46  1  0
 20 47  1  0
 21 48  1  0
 23 49  1  0
 26 50  1  0
 26 51  1  0
 27 52  1  0
 30 53  1  6
 31 54  1  0
 32 55  1  1
 33 56  1  0
 34 57  1  1
 35 58  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₆H₂₃N₃O₆

Average Mass

473.4850 Da

Monoisotopic Mass

473.15869 Da

IUPAC Name

7-hydroxy-3-[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]-3,13,23-triazahexacyclo[14.7.0.0^{2,10}.0^{4,9}.0^{11,15}.0^{17,22}]tricosa-1,4,6,8,10,15,17,19,21-nonaen-12-one

Traditional Name

7-hydroxy-3-[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]-3,13,23-triazahexacyclo[14.7.0.0^{2,10}.0^{4,9}.0^{11,15}.0^{17,22}]tricosa-1,4,6,8,10,15,17,19,21-nonaen-12-one

CAS Registry Number

Not Available

SMILES

C[C@@H]1O[C@H]([C@H](O)[C@H](O)[C@H]1O)N1C2=CC=C(O)C=C2C2=C3C(=O)NCC3=C3C(NC4=CC=CC=C34)=C12

InChI Identifier

InChI=1S/C26H23N3O6/c1-10-22(31)23(32)24(33)26(35-10)29-16-7-6-11(30)8-13(16)18-19-14(9-27-25(19)34)17-12-4-2-3-5-15(12)28-20(17)21(18)29/h2-8,10,22-24,26,28,30-33H,9H2,1H3,(H,27,34)/t10-,22-,23+,24+,26+/m0/s1

InChI Key

JBELEMSZEPUNJB-SCZMJFPFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	29772796

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.79	ALOGPS
logP	1.59	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	9.31	ChemAxon
pKa (Strongest Basic)	-1.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	139.97 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	126.41 m³·mol⁻¹	ChemAxon
Polarizability	50.22 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA023325

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78439261

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139590608

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wang C, Monger A, Wang L, Fu P, Piyachaturawat P, Chairoungdua A, Zhu W: Precursor-Directed Generation of Indolocarbazoles with Topoisomerase IIalpha Inhibitory Activity. Mar Drugs. 2018 May 17;16(5). pii: md16050168. doi: 10.3390/md16050168. [PubMed:29772796 ]

Showing NP-Card for 3-hydroxy-K252d (NP0018112)

MOL for NP0018112 (3-hydroxy-K252d)

3D MOL for NP0018112 (3-hydroxy-K252d)

3D SDF for NP0018112 (3-hydroxy-K252d)

3D-SDF for NP0018112 (3-hydroxy-K252d)

PDB for NP0018112 (3-hydroxy-K252d)

3D PDB for NP0018112 (3-hydroxy-K252d)

SMILES for NP0018112 (3-hydroxy-K252d)

INCHI for NP0018112 (3-hydroxy-K252d)

Structure for NP0018112 (3-hydroxy-K252d)

3D Structure for NP0018112 (3-hydroxy-K252d)