NP-MRD: Showing NP-Card for L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone (NP0018085)

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Record Information

Version

2.0

Created at

2021-01-06 02:41:09 UTC

Updated at

2021-07-15 17:27:16 UTC

NP-MRD ID

NP0018085

Secondary Accession Numbers

None

Natural Product Identification

Common Name

L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone

Provided By

NPAtlas

Description

L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone is found in Streptomyces. Based on a literature review very few articles have been published on (8S,10S)-8-ethyl-1,6,8,11-tetrahydroxy-10-{[(2R,4S,5S,6S)-4-hydroxy-5-{[(2S,4S,5S,6S)-4-hydroxy-5-{[(2S,5S,6S)-5-hydroxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-5,7,8,9,10,12-hexahydrotetracene-5,12-dione.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652307042107393D          

101107  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652307042107393D          

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 50 51  2  0  0  0  0
 51 52  1  0  0  0  0
 52 53  2  0  0  0  0
 42  3  1  0  0  0  0
 51 45  1  0  0  0  0
 13  6  1  0  0  0  0
 41 16  1  0  0  0  0
 52  9  1  0  0  0  0
 38 22  1  0  0  0  0
 35 28  1  0  0  0  0
  1 54  1  0  0  0  0
  1 55  1  0  0  0  0
  1 56  1  0  0  0  0
  2 57  1  0  0  0  0
  2 58  1  0  0  0  0
  4 59  1  0  0  0  0
  5 60  1  0  0  0  0
  5 61  1  0  0  0  0
  8 62  1  0  0  0  0
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 48 99  1  0  0  0  0
 49100  1  0  0  0  0
 50101  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0018085

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=O)C3=C(C(=O)C2=C([H])C([H])=C1[H])C(O[H])=C1C(=C3O[H])[C@@]([H])(O[C@]2([H])O[C@@]([H])(C([H])([H])[H])[C@@]([H])(O[C@]3([H])O[C@@]([H])(C([H])([H])[H])[C@@]([H])(O[C@]4([H])O[C@@]([H])(C([H])([H])[H])[C@@]([H])(O[H])C([H])([H])C4([H])[H])[C@@]([H])(O[H])C3([H])[H])[C@@]([H])(O[H])C2([H])[H])C([H])([H])[C@](O[H])(C([H])([H])C([H])([H])[H])C1([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C38H48O15/c1-5-38(47)13-19-29(35(46)31-30(33(19)44)32(43)18-7-6-8-21(40)28(18)34(31)45)24(14-38)51-26-11-22(41)37(17(4)49-26)53-27-12-23(42)36(16(3)50-27)52-25-10-9-20(39)15(2)48-25/h6-8,15-17,20,22-27,36-37,39-42,44,46-47H,5,9-14H2,1-4H3/t15-,16-,17-,20-,22-,23-,24-,25-,26-,27-,36+,37+,38-/m0/s1

> <INCHI_KEY>
XGPWWOMGKGUTPY-JSBASDIWSA-N

> <FORMULA>
C38H48O15

> <MOLECULAR_WEIGHT>
744.787

> <EXACT_MASS>
744.299320846

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_ATOM_COUNT>
101

> <JCHEM_AVERAGE_POLARIZABILITY>
78.91629706753369

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(8S,10S)-8-ethyl-1,6,8,11-tetrahydroxy-10-{[(2R,4S,5S,6S)-4-hydroxy-5-{[(2S,4S,5S,6S)-4-hydroxy-5-{[(2S,5S,6S)-5-hydroxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-5,7,8,9,10,12-hexahydrotetracene-5,12-dione

> <ALOGPS_LOGP>
2.17

> <JCHEM_LOGP>
4.761829695999998

> <ALOGPS_LOGS>
-3.28

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.542250718504272

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.905121604847786

> <JCHEM_PKA_STRONGEST_BASIC>
-3.034215705562233

> <JCHEM_POLAR_SURFACE_AREA>
231.12999999999994

> <JCHEM_REFRACTIVITY>
184.16230000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.88e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(8S,10S)-8-ethyl-1,6,8,11-tetrahydroxy-10-{[(2R,4S,5S,6S)-4-hydroxy-5-{[(2S,4S,5S,6S)-4-hydroxy-5-{[(2S,5S,6S)-5-hydroxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-9,10-dihydro-7H-tetracene-5,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

101107  0  0  0  0  0  0  0  0999 V2000
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 48 99  1  0
 49100  1  0
 50101  1  0
M  END

HEADER    PROTEIN                                 04-JUL-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JUL-21         0                                  
HETATM    1  C   UNK     0      -6.382  -5.047  -0.556  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.160  -4.903   0.294  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.727  -3.441   0.442  0.00  0.00           C+0
HETATM    4  O   UNK     0      -3.584  -3.474   1.254  0.00  0.00           O+0
HETATM    5  C   UNK     0      -5.758  -2.627   1.144  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.987  -1.285   0.551  0.00  0.00           C+0
HETATM    7  C   UNK     0      -7.095  -0.580   0.972  0.00  0.00           C+0
HETATM    8  O   UNK     0      -7.984  -1.093   1.923  0.00  0.00           O+0
HETATM    9  C   UNK     0      -7.389   0.678   0.474  0.00  0.00           C+0
HETATM   10  C   UNK     0      -6.564   1.256  -0.468  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.452   0.529  -0.878  0.00  0.00           C+0
HETATM   12  O   UNK     0      -4.652   1.144  -1.822  0.00  0.00           O+0
HETATM   13  C   UNK     0      -5.171  -0.716  -0.378  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.977  -1.459  -0.842  0.00  0.00           C+0
HETATM   15  O   UNK     0      -2.921  -1.365   0.056  0.00  0.00           O+0
HETATM   16  C   UNK     0      -1.740  -0.946  -0.561  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.331   0.328   0.108  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.071   0.765  -0.155  0.00  0.00           C+0
HETATM   19  O   UNK     0       0.121   1.509  -1.357  0.00  0.00           O+0
HETATM   20  C   UNK     0       1.056  -0.364  -0.203  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.153   0.016  -0.973  0.00  0.00           O+0
HETATM   22  C   UNK     0       3.340  -0.044  -0.248  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.274  -0.979  -0.943  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.715  -0.797  -0.602  0.00  0.00           C+0
HETATM   25  O   UNK     0       6.146  -1.702   0.394  0.00  0.00           O+0
HETATM   26  C   UNK     0       6.098   0.612  -0.232  0.00  0.00           C+0
HETATM   27  O   UNK     0       7.296   0.548   0.451  0.00  0.00           O+0
HETATM   28  C   UNK     0       8.332   1.214  -0.206  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.856   2.372   0.562  0.00  0.00           C+0
HETATM   30  C   UNK     0      10.348   2.490   0.377  0.00  0.00           C+0
HETATM   31  C   UNK     0      10.966   1.227   0.968  0.00  0.00           C+0
HETATM   32  O   UNK     0      12.165   1.001   0.318  0.00  0.00           O+0
HETATM   33  C   UNK     0      10.036   0.048   0.698  0.00  0.00           C+0
HETATM   34  C   UNK     0      10.770  -1.245   0.576  0.00  0.00           C+0
HETATM   35  O   UNK     0       9.307   0.291  -0.472  0.00  0.00           O+0
HETATM   36  C   UNK     0       5.024   1.295   0.580  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.879   0.689   1.953  0.00  0.00           C+0
HETATM   38  O   UNK     0       3.842   1.252  -0.156  0.00  0.00           O+0
HETATM   39  C   UNK     0       0.472  -1.610  -0.836  0.00  0.00           C+0
HETATM   40  C   UNK     0       0.524  -1.498  -2.329  0.00  0.00           C+0
HETATM   41  O   UNK     0      -0.786  -1.908  -0.338  0.00  0.00           O+0
HETATM   42  C   UNK     0      -4.438  -2.923  -0.926  0.00  0.00           C+0
HETATM   43  C   UNK     0      -6.869   2.586  -0.999  0.00  0.00           C+0
HETATM   44  O   UNK     0      -6.120   3.103  -1.849  0.00  0.00           O+0
HETATM   45  C   UNK     0      -8.042   3.338  -0.558  0.00  0.00           C+0
HETATM   46  C   UNK     0      -8.359   4.591  -1.038  0.00  0.00           C+0
HETATM   47  O   UNK     0      -7.505   5.135  -1.982  0.00  0.00           O+0
HETATM   48  C   UNK     0      -9.482   5.295  -0.607  0.00  0.00           C+0
HETATM   49  C   UNK     0     -10.311   4.713   0.339  0.00  0.00           C+0
HETATM   50  C   UNK     0      -9.993   3.462   0.817  0.00  0.00           C+0
HETATM   51  C   UNK     0      -8.884   2.766   0.392  0.00  0.00           C+0
HETATM   52  C   UNK     0      -8.559   1.432   0.912  0.00  0.00           C+0
HETATM   53  O   UNK     0      -9.319   0.911   1.772  0.00  0.00           O+0
HETATM   54  H   UNK     0      -7.022  -5.840  -0.118  0.00  0.00           H+0
HETATM   55  H   UNK     0      -7.029  -4.130  -0.572  0.00  0.00           H+0
HETATM   56  H   UNK     0      -6.156  -5.379  -1.591  0.00  0.00           H+0
HETATM   57  H   UNK     0      -5.439  -5.212   1.343  0.00  0.00           H+0
HETATM   58  H   UNK     0      -4.363  -5.519  -0.122  0.00  0.00           H+0
HETATM   59  H   UNK     0      -3.561  -2.689   1.879  0.00  0.00           H+0
HETATM   60  H   UNK     0      -5.469  -2.427   2.218  0.00  0.00           H+0
HETATM   61  H   UNK     0      -6.691  -3.228   1.223  0.00  0.00           H+0
HETATM   62  H   UNK     0      -7.864  -1.997   2.349  0.00  0.00           H+0
HETATM   63  H   UNK     0      -3.824   0.796  -2.237  0.00  0.00           H+0
HETATM   64  H   UNK     0      -3.613  -1.178  -1.833  0.00  0.00           H+0
HETATM   65  H   UNK     0      -1.847  -0.765  -1.637  0.00  0.00           H+0
HETATM   66  H   UNK     0      -2.004   1.178  -0.180  0.00  0.00           H+0
HETATM   67  H   UNK     0      -1.485   0.201   1.213  0.00  0.00           H+0
HETATM   68  H   UNK     0       0.366   1.476   0.644  0.00  0.00           H+0
HETATM   69  H   UNK     0       1.031   1.728  -1.622  0.00  0.00           H+0
HETATM   70  H   UNK     0       1.364  -0.628   0.836  0.00  0.00           H+0
HETATM   71  H   UNK     0       3.130  -0.398   0.803  0.00  0.00           H+0
HETATM   72  H   UNK     0       4.138  -0.809  -2.048  0.00  0.00           H+0
HETATM   73  H   UNK     0       3.976  -2.029  -0.687  0.00  0.00           H+0
HETATM   74  H   UNK     0       6.315  -1.063  -1.520  0.00  0.00           H+0
HETATM   75  H   UNK     0       5.959  -2.624   0.096  0.00  0.00           H+0
HETATM   76  H   UNK     0       6.227   1.192  -1.167  0.00  0.00           H+0
HETATM   77  H   UNK     0       7.866   1.626  -1.145  0.00  0.00           H+0
HETATM   78  H   UNK     0       8.695   2.262   1.668  0.00  0.00           H+0
HETATM   79  H   UNK     0       8.424   3.340   0.201  0.00  0.00           H+0
HETATM   80  H   UNK     0      10.612   2.633  -0.671  0.00  0.00           H+0
HETATM   81  H   UNK     0      10.696   3.343   0.999  0.00  0.00           H+0
HETATM   82  H   UNK     0      11.126   1.333   2.036  0.00  0.00           H+0
HETATM   83  H   UNK     0      12.494   1.815  -0.134  0.00  0.00           H+0
HETATM   84  H   UNK     0       9.315  -0.002   1.531  0.00  0.00           H+0
HETATM   85  H   UNK     0      11.078  -1.514  -0.438  0.00  0.00           H+0
HETATM   86  H   UNK     0      10.142  -2.102   0.955  0.00  0.00           H+0
HETATM   87  H   UNK     0      11.686  -1.266   1.226  0.00  0.00           H+0
HETATM   88  H   UNK     0       5.296   2.362   0.697  0.00  0.00           H+0
HETATM   89  H   UNK     0       5.804   0.971   2.523  0.00  0.00           H+0
HETATM   90  H   UNK     0       3.968   1.044   2.437  0.00  0.00           H+0
HETATM   91  H   UNK     0       4.842  -0.421   1.915  0.00  0.00           H+0
HETATM   92  H   UNK     0       1.139  -2.449  -0.541  0.00  0.00           H+0
HETATM   93  H   UNK     0       1.576  -1.748  -2.637  0.00  0.00           H+0
HETATM   94  H   UNK     0       0.346  -0.460  -2.665  0.00  0.00           H+0
HETATM   95  H   UNK     0      -0.113  -2.237  -2.841  0.00  0.00           H+0
HETATM   96  H   UNK     0      -5.417  -2.874  -1.470  0.00  0.00           H+0
HETATM   97  H   UNK     0      -3.752  -3.531  -1.511  0.00  0.00           H+0
HETATM   98  H   UNK     0      -7.705   6.048  -2.354  0.00  0.00           H+0
HETATM   99  H   UNK     0      -9.692   6.283  -1.015  0.00  0.00           H+0
HETATM  100  H   UNK     0     -11.170   5.275   0.655  0.00  0.00           H+0
HETATM  101  H   UNK     0     -10.646   3.022   1.553  0.00  0.00           H+0
CONECT    1    2   54   55   56                                             
CONECT    2    1    3   57   58                                             
CONECT    3    2    4    5   42                                             
CONECT    4    3   59                                                       
CONECT    5    3    6   60   61                                             
CONECT    6    5    7   13                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7   62                                                       
CONECT    9    7   10   52                                                  
CONECT   10    9   11   43                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11   63                                                       
CONECT   13   11   14    6                                                  
CONECT   14   13   15   42   64                                             
CONECT   15   14   16                                                       
CONECT   16   15   17   41   65                                             
CONECT   17   16   18   66   67                                             
CONECT   18   17   19   20   68                                             
CONECT   19   18   69                                                       
CONECT   20   18   21   39   70                                             
CONECT   21   20   22                                                       
CONECT   22   21   23   38   71                                             
CONECT   23   22   24   72   73                                             
CONECT   24   23   25   26   74                                             
CONECT   25   24   75                                                       
CONECT   26   24   27   36   76                                             
CONECT   27   26   28                                                       
CONECT   28   27   29   35   77                                             
CONECT   29   28   30   78   79                                             
CONECT   30   29   31   80   81                                             
CONECT   31   30   32   33   82                                             
CONECT   32   31   83                                                       
CONECT   33   31   34   35   84                                             
CONECT   34   33   85   86   87                                             
CONECT   35   33   28                                                       
CONECT   36   26   37   38   88                                             
CONECT   37   36   89   90   91                                             
CONECT   38   36   22                                                       
CONECT   39   20   40   41   92                                             
CONECT   40   39   93   94   95                                             
CONECT   41   39   16                                                       
CONECT   42   14    3   96   97                                             
CONECT   43   10   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43   46   51                                                  
CONECT   46   45   47   48                                                  
CONECT   47   46   98                                                       
CONECT   48   46   49   99                                                  
CONECT   49   48   50  100                                                  
CONECT   50   49   51  101                                                  
CONECT   51   50   52   45                                                  
CONECT   52   51   53    9                                                  
CONECT   53   52                                                            
CONECT   54    1                                                            
CONECT   55    1                                                            
CONECT   56    1                                                            
CONECT   57    2                                                            
CONECT   58    2                                                            
CONECT   59    4                                                            
CONECT   60    5                                                            
CONECT   61    5                                                            
CONECT   62    8                                                            
CONECT   63   12                                                            
CONECT   64   14                                                            
CONECT   65   16                                                            
CONECT   66   17                                                            
CONECT   67   17                                                            
CONECT   68   18                                                            
CONECT   69   19                                                            
CONECT   70   20                                                            
CONECT   71   22                                                            
CONECT   72   23                                                            
CONECT   73   23                                                            
CONECT   74   24                                                            
CONECT   75   25                                                            
CONECT   76   26                                                            
CONECT   77   28                                                            
CONECT   78   29                                                            
CONECT   79   29                                                            
CONECT   80   30                                                            
CONECT   81   30                                                            
CONECT   82   31                                                            
CONECT   83   32                                                            
CONECT   84   33                                                            
CONECT   85   34                                                            
CONECT   86   34                                                            
CONECT   87   34                                                            
CONECT   88   36                                                            
CONECT   89   37                                                            
CONECT   90   37                                                            
CONECT   91   37                                                            
CONECT   92   39                                                            
CONECT   93   40                                                            
CONECT   94   40                                                            
CONECT   95   40                                                            
CONECT   96   42                                                            
CONECT   97   42                                                            
CONECT   98   47                                                            
CONECT   99   48                                                            
CONECT  100   49                                                            
CONECT  101   50                                                            
MASTER        0    0    0    0    0    0    0    0  101    0  214    0
END

RDKit          3D

101107  0  0  0  0  0  0  0  0999 V2000
   -6.3824   -5.0468   -0.5559 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1604   -4.9026    0.2944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7274   -3.4411    0.4420 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5844   -3.4738    1.2542 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7579   -2.6271    1.1436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9865   -1.2851    0.5508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0949   -0.5801    0.9719 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9842   -1.0925    1.9234 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3892    0.6784    0.4740 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5639    1.2565   -0.4675 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4525    0.5291   -0.8780 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6521    1.1439   -1.8218 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1710   -0.7162   -0.3780 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9774   -1.4593   -0.8421 C   0  0  1  0  0  0  0  0  0  0  0  0
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   12.1655    1.0013    0.3177 O   0  0  0  0  0  0  0  0  0  0  0  0
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    5.0236    1.2950    0.5804 C   0  0  2  0  0  0  0  0  0  0  0  0
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  -10.6455    3.0217    1.5525 H   0  0  0  0  0  0  0  0  0  0  0  0
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 50101  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₃₈H₄₈O₁₅

Average Mass

744.7870 Da

Monoisotopic Mass

744.29932 Da

IUPAC Name

(8S,10S)-8-ethyl-1,6,8,11-tetrahydroxy-10-{[(2R,4S,5S,6S)-4-hydroxy-5-{[(2S,4S,5S,6S)-4-hydroxy-5-{[(2S,5S,6S)-5-hydroxy-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-5,7,8,9,10,12-hexahydrotetracene-5,12-dione

Traditional Name

CAS Registry Number

Not Available

SMILES

CC[C@@]1(O)C[C@H](O[C@H]2C[C@H](O)[C@H](O[C@H]3C[C@H](O)[C@H](O[C@H]4CC[C@H](O)[C@H](C)O4)[C@H](C)O3)[C@H](C)O2)C2=C(O)C3=C(C(O)=C2C1)C(=O)C1=C(C(O)=CC=C1)C3=O

InChI Identifier

InChI=1S/C38H48O15/c1-5-38(47)13-19-29(35(46)31-30(33(19)44)32(43)18-7-6-8-21(40)28(18)34(31)45)24(14-38)51-26-11-22(41)37(17(4)49-26)53-27-12-23(42)36(16(3)50-27)52-25-10-9-20(39)15(2)48-25/h6-8,15-17,20,22-27,36-37,39-42,44,46-47H,5,9-14H2,1-4H3/t15-,16-,17-,20-,22-,23-,24-,25-,26-,27-,36+,37+,38-/m0/s1

InChI Key

XGPWWOMGKGUTPY-JSBASDIWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	29767975

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.17	ALOGPS
logP	4.76	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	7.91	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	15	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	231.13 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	184.16 m³·mol⁻¹	ChemAxon
Polarizability	78.92 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA022644

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78439067

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139589982

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone (NP0018085)

MOL for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)

3D MOL for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)

3D SDF for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)

3D-SDF for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)

PDB for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)

3D PDB for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)

SMILES for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)

INCHI for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)

Structure for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)

3D Structure for NP0018085 (L-rhodinose-2-deoxy-L-fucose-2-deoxy-L-fucose-10-decarbomethoxy-ε-rhodomycinone)