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Record Information
Version1.0
Created at2021-01-06 02:27:48 UTC
Updated at2021-07-15 17:26:30 UTC
NP-MRD IDNP0017813
Secondary Accession NumbersNone
Natural Product Identification
Common NamePrezeamine
Provided ByNPAtlasNPAtlas Logo
Description Prezeamine is found in Serratia plymuthica and Serratia plymuthica RVH1. It was first documented in 2015 (PMID: 29560178). Based on a literature review very few articles have been published on 2-amino-3-[(1-{[3-({4,6-dihydroxy-2-methyl-7-[(11,19,27,35-tetraamino-3-hydroxytetracontyl)-C-hydroxycarbonimidoyl]heptan-3-yl}-C-hydroxycarbonimidoyl)-5,8,11-trihydroxy-6-[(C-hydroxycarbonimidoyl)methyl]-2-methyl-1,4,7-triazacycloundeca-1(11),4,7-trien-9-yl]-C-hydroxycarbonimidoyl}-2-(1H-imidazol-5-yl)ethyl)-C-hydroxycarbonimidoyl]propanoic acid.
Structure
Thumb
Synonyms
ValueSource
2-Amino-3-[(1-{[3-({4,6-dihydroxy-2-methyl-7-[(11,19,27,35-tetraamino-3-hydroxytetracontyl)-C-hydroxycarbonimidoyl]heptan-3-yl}-C-hydroxycarbonimidoyl)-5,8,11-trihydroxy-6-[(C-hydroxycarbonimidoyl)methyl]-2-methyl-1,4,7-triazacycloundeca-1(11),4,7-trien-9-yl]-C-hydroxycarbonimidoyl}-2-(1H-imidazol-5-yl)ethyl)-C-hydroxycarbonimidoyl]propanoateGenerator
Chemical FormulaC71H133N15O13
Average Mass1404.9370 Da
Monoisotopic Mass1404.02073 Da
IUPAC Name(2S)-2-amino-3-[(1-{[(2S,3R,6S,9S)-6-(carbamoylmethyl)-3-{[(3S,4S,6S)-4,6-dihydroxy-2-methyl-7-{[(11S,19S,27R,35R)-11,19,27,35-tetraamino-3-hydroxytetracontyl]carbamoyl}heptan-3-yl]carbamoyl}-2-methyl-5,8,11-trioxo-1,4,7-triazacycloundecan-9-yl]carbamoyl}-2-(1H-imidazol-5-yl)ethyl)carbamoyl]propanoic acid
Traditional Name(2S)-2-amino-3-[(1-{[(2S,3R,6S,9S)-6-(carbamoylmethyl)-3-{[(3S,4S,6S)-4,6-dihydroxy-2-methyl-7-{[(11S,19S,27R,35R)-11,19,27,35-tetraamino-3-hydroxytetracontyl]carbamoyl}heptan-3-yl]carbamoyl}-2-methyl-5,8,11-trioxo-1,4,7-triazacycloundecan-9-yl]carbamoyl}-2-(3H-imidazol-4-yl)ethyl)carbamoyl]propanoic acid
CAS Registry NumberNot Available
SMILES
CCCCCC(N)CCCCCCCC(N)CCCCCCCC(N)CCCCCCCC(N)CCCCCCCC(O)CCNC(=O)CC(O)CC(O)C(NC(=O)C1NC(=O)C(CC(N)=O)NC(=O)C(CC(=O)NC1C)NC(=O)C(CC1=CN=CN1)NC(=O)CC(N)C(O)=O)C(C)C
InChI Identifier
InChI=1S/C71H133N15O13/c1-5-6-19-28-49(72)29-20-11-7-12-21-30-50(73)31-22-13-8-14-23-32-51(74)33-24-15-9-16-25-34-52(75)35-26-17-10-18-27-36-54(87)37-38-79-62(91)41-55(88)40-60(89)65(47(2)3)85-70(97)66-48(4)81-64(93)44-59(68(95)83-58(43-61(77)90)69(96)86-66)84-67(94)57(39-53-45-78-46-80-53)82-63(92)42-56(76)71(98)99/h45-52,54-60,65-66,87-89H,5-44,72-76H2,1-4H3,(H2,77,90)(H,78,80)(H,79,91)(H,81,93)(H,82,92)(H,83,95)(H,84,94)(H,85,97)(H,86,96)(H,98,99)
InChI KeyYSKPBPMQZLMBEW-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Serratia plymuthicaLOTUS Database
Serratia plymuthica RVH1NPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.3ChemAxon
pKa (Strongest Acidic)1.68ChemAxon
pKa (Strongest Basic)10.84ChemAxon
Physiological Charge5ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count18ChemAxon
Polar Surface Area503.56 ŲChemAxon
Rotatable Bond Count57ChemAxon
Refractivity380.47 m³·mol⁻¹ChemAxon
Polarizability158.93 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA028623
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound146684681
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Masschelein J, Clauwers C, Awodi UR, Stalmans K, Vermaelen W, Lescrinier E, Aertsen A, Michiels C, Challis GL, Lavigne R: A combination of polyunsaturated fatty acid, nonribosomal peptide and polyketide biosynthetic machinery is used to assemble the zeamine antibiotics. Chem Sci. 2015 Feb 1;6(2):923-929. doi: 10.1039/c4sc01927j. Epub 2014 Oct 15. [PubMed:29560178 ]