NP-MRD: Showing NP-Card for Mayamycin B (NP0017749)

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Record Information

Version

2.0

Created at

2021-01-06 02:24:59 UTC

Updated at

2021-07-15 17:26:20 UTC

NP-MRD ID

NP0017749

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Mayamycin B

Provided By

NPAtlas

Description

Mayamycin B is found in Streptomyces. Mayamycin B was first documented in 2018 (PMID: 29515228). Based on a literature review very few articles have been published on Mayamycin B.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242104273D          

 56 60  0  0  0  0            999 V2000
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M  END

     RDKit          3D

 56 60  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306242104273D          

 56 60  0  0  0  0            999 V2000
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    3.2905    4.0705    1.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2456   -2.8581   -0.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9592   -1.3861    1.0361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3984    1.1399   -0.0098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4441    0.3268    1.6659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1324   -0.8225    1.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7096    0.7598   -0.4101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9327   -0.7400   -1.1028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9404   -2.4787   -0.8297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0595   -2.5858    1.5575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5638   -2.9161   -1.4014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9562   -0.6098   -2.8064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9969   -1.9692   -3.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5294   -2.2735   -2.6492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9256    1.8675    1.4132 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7729   -3.9009   -1.8775 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0261   -2.6018   -1.7365 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8720   -0.4401   -0.8983 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2815    1.1734    0.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 11 21  1  0  0  0  0
 21 22  2  0  0  0  0
  8 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 22  2  1  0  0  0  0
 31 25  1  0  0  0  0
 21  6  1  0  0  0  0
 32  7  1  0  0  0  0
 20 12  1  0  0  0  0
  1 34  1  0  0  0  0
  1 35  1  0  0  0  0
  1 36  1  0  0  0  0
  3 37  1  0  0  0  0
  5 38  1  0  0  0  0
 10 39  1  0  0  0  0
 12 40  1  1  0  0  0
 13 41  1  0  0  0  0
 13 42  1  0  0  0  0
 14 43  1  1  0  0  0
 15 44  1  0  0  0  0
 15 45  1  0  0  0  0
 16 46  1  6  0  0  0
 17 47  1  0  0  0  0
 18 48  1  6  0  0  0
 19 49  1  0  0  0  0
 19 50  1  0  0  0  0
 19 51  1  0  0  0  0
 22 52  1  0  0  0  0
 27 53  1  0  0  0  0
 28 54  1  0  0  0  0
 29 55  1  0  0  0  0
 30 56  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0017749

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC1=C2C(=O)C3=C(C(=O)C2=C([H])C([H])=C1[H])C1=C(O[H])C([H])=C(C([H])=C1C(=C3O[H])[C@]1([H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@]([H])(N([H])[H])C1([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C25H23NO7/c1-9-6-12-17(15(28)7-9)20-21(24(31)18-11(23(20)30)4-3-5-14(18)27)25(32)19(12)16-8-13(26)22(29)10(2)33-16/h3-7,10,13,16,22,27-29,32H,8,26H2,1-2H3/t10-,13-,16-,22-/m1/s1

> <INCHI_KEY>
YNBJLMMIDVNPQX-WZSPRZBJSA-N

> <FORMULA>
C25H23NO7

> <MOLECULAR_WEIGHT>
449.459

> <EXACT_MASS>
449.147452085

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
47.41362091812704

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(2R,4R,5S,6R)-4-amino-5-hydroxy-6-methyloxan-2-yl]-1,6,8-trihydroxy-3-methyl-7,12-dihydrotetraphene-7,12-dione

> <ALOGPS_LOGP>
2.07

> <JCHEM_LOGP>
2.6403737981910016

> <ALOGPS_LOGS>
-3.52

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
8.221023821155356

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.414622067996691

> <JCHEM_PKA_STRONGEST_BASIC>
9.496236364075584

> <JCHEM_POLAR_SURFACE_AREA>
150.31

> <JCHEM_REFRACTIVITY>
120.72009999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.36e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-[(2R,4R,5S,6R)-4-amino-5-hydroxy-6-methyloxan-2-yl]-1,6,8-trihydroxy-3-methyltetraphene-7,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 56 60  0  0  0  0  0  0  0  0999 V2000
   -1.5468    4.2851    2.4323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5286    3.3410    1.8767 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8011    3.6326    1.8353 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7237    2.7163    1.3044 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0014    3.1591    1.3382 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3071    1.5291    0.8248 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1999    0.6192    0.3137 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7057   -0.5923   -0.1540 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3935   -0.9084   -0.1277 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0944   -2.0768   -0.5767 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5851    0.0060    0.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9525   -0.4280    0.3618 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1915    0.1950    0.5807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4099   -0.6525    0.1928 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.2003   -0.0354   -0.8616 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0603   -2.0200   -0.2862 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6586   -2.8889    0.7043 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9720   -1.8539   -1.2881 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6215   -1.6258   -2.6283 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0148   -1.1032   -0.8807 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0685    1.1714    0.8416 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9209    2.1185    1.3783 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6833   -1.5682   -0.7104 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2272   -2.6572   -1.1287 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1042   -1.2741   -0.7672 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9770   -2.1955   -1.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5775   -3.3966   -1.7624 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3550   -1.8676   -1.3252 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8281   -0.6737   -0.8631 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9237    0.2245   -0.3489 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5604   -0.0660   -0.2965 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6179    0.9059    0.2538 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1356    1.9368    0.6383 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6112    4.2541    3.5180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5359    4.1307    1.9158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2180    5.3086    2.1049 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1281    4.5947    2.2247 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2905    4.0705    1.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2456   -2.8581   -0.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9592   -1.3861    1.0361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3984    1.1399   -0.0098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4441    0.3268    1.6659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1324   -0.8225    1.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7096    0.7598   -0.4101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9327   -0.7400   -1.1028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9404   -2.4787   -0.8297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0595   -2.5858    1.5575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5638   -2.9161   -1.4014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9562   -0.6098   -2.8064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9969   -1.9692   -3.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5294   -2.2735   -2.6492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9256    1.8675    1.4132 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7729   -3.9009   -1.8775 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0261   -2.6018   -1.7365 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8720   -0.4401   -0.8983 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2815    1.1734    0.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 18 20  1  0
 11 21  1  0
 21 22  2  0
  8 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  2  0
 26 27  1  0
 26 28  1  0
 28 29  2  0
 29 30  1  0
 30 31  2  0
 31 32  1  0
 32 33  2  0
 22  2  1  0
 31 25  1  0
 21  6  1  0
 32  7  1  0
 20 12  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  3 37  1  0
  5 38  1  0
 10 39  1  0
 12 40  1  1
 13 41  1  0
 13 42  1  0
 14 43  1  1
 15 44  1  0
 15 45  1  0
 16 46  1  6
 17 47  1  0
 18 48  1  6
 19 49  1  0
 19 50  1  0
 19 51  1  0
 22 52  1  0
 27 53  1  0
 28 54  1  0
 29 55  1  0
 30 56  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.547   4.285   2.432  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.529   3.341   1.877  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.801   3.633   1.835  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.724   2.716   1.304  0.00  0.00           C+0
HETATM    5  O   UNK     0       3.001   3.159   1.338  0.00  0.00           O+0
HETATM    6  C   UNK     0       1.307   1.529   0.825  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.200   0.619   0.314  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.706  -0.592  -0.154  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.394  -0.908  -0.128  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.094  -2.077  -0.577  0.00  0.00           O+0
HETATM   11  C   UNK     0      -0.585   0.006   0.395  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.952  -0.428   0.362  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.192   0.195   0.581  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.410  -0.653   0.193  0.00  0.00           C+0
HETATM   15  N   UNK     0      -5.200  -0.035  -0.862  0.00  0.00           N+0
HETATM   16  C   UNK     0      -4.060  -2.020  -0.286  0.00  0.00           C+0
HETATM   17  O   UNK     0      -3.659  -2.889   0.704  0.00  0.00           O+0
HETATM   18  C   UNK     0      -2.972  -1.854  -1.288  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.622  -1.626  -2.628  0.00  0.00           C+0
HETATM   20  O   UNK     0      -2.015  -1.103  -0.881  0.00  0.00           O+0
HETATM   21  C   UNK     0      -0.069   1.171   0.842  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.921   2.119   1.378  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.683  -1.568  -0.710  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.227  -2.657  -1.129  0.00  0.00           O+0
HETATM   25  C   UNK     0       4.104  -1.274  -0.767  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.977  -2.196  -1.287  0.00  0.00           C+0
HETATM   27  O   UNK     0       4.577  -3.397  -1.762  0.00  0.00           O+0
HETATM   28  C   UNK     0       6.355  -1.868  -1.325  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.828  -0.674  -0.863  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.924   0.225  -0.349  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.560  -0.066  -0.297  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.618   0.906   0.254  0.00  0.00           C+0
HETATM   33  O   UNK     0       4.136   1.937   0.638  0.00  0.00           O+0
HETATM   34  H   UNK     0      -1.611   4.254   3.518  0.00  0.00           H+0
HETATM   35  H   UNK     0      -2.536   4.131   1.916  0.00  0.00           H+0
HETATM   36  H   UNK     0      -1.218   5.309   2.105  0.00  0.00           H+0
HETATM   37  H   UNK     0       1.128   4.595   2.225  0.00  0.00           H+0
HETATM   38  H   UNK     0       3.291   4.071   1.710  0.00  0.00           H+0
HETATM   39  H   UNK     0       0.246  -2.858  -0.961  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.959  -1.386   1.036  0.00  0.00           H+0
HETATM   41  H   UNK     0      -3.398   1.140  -0.010  0.00  0.00           H+0
HETATM   42  H   UNK     0      -3.444   0.327   1.666  0.00  0.00           H+0
HETATM   43  H   UNK     0      -5.132  -0.823   1.016  0.00  0.00           H+0
HETATM   44  H   UNK     0      -5.710   0.760  -0.410  0.00  0.00           H+0
HETATM   45  H   UNK     0      -5.933  -0.740  -1.103  0.00  0.00           H+0
HETATM   46  H   UNK     0      -4.940  -2.479  -0.830  0.00  0.00           H+0
HETATM   47  H   UNK     0      -4.059  -2.586   1.558  0.00  0.00           H+0
HETATM   48  H   UNK     0      -2.564  -2.916  -1.401  0.00  0.00           H+0
HETATM   49  H   UNK     0      -3.956  -0.610  -2.806  0.00  0.00           H+0
HETATM   50  H   UNK     0      -2.997  -1.969  -3.478  0.00  0.00           H+0
HETATM   51  H   UNK     0      -4.529  -2.273  -2.649  0.00  0.00           H+0
HETATM   52  H   UNK     0      -1.926   1.867   1.413  0.00  0.00           H+0
HETATM   53  H   UNK     0       3.773  -3.901  -1.878  0.00  0.00           H+0
HETATM   54  H   UNK     0       7.026  -2.602  -1.736  0.00  0.00           H+0
HETATM   55  H   UNK     0       7.872  -0.440  -0.898  0.00  0.00           H+0
HETATM   56  H   UNK     0       6.282   1.173   0.020  0.00  0.00           H+0
CONECT    1    2   34   35   36                                             
CONECT    2    1    3   22                                                  
CONECT    3    2    4   37                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4   38                                                       
CONECT    6    4    7   21                                                  
CONECT    7    6    8   32                                                  
CONECT    8    7    9   23                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9   39                                                       
CONECT   11    9   12   21                                                  
CONECT   12   11   13   20   40                                             
CONECT   13   12   14   41   42                                             
CONECT   14   13   15   16   43                                             
CONECT   15   14   44   45                                                  
CONECT   16   14   17   18   46                                             
CONECT   17   16   47                                                       
CONECT   18   16   19   20   48                                             
CONECT   19   18   49   50   51                                             
CONECT   20   18   12                                                       
CONECT   21   11   22    6                                                  
CONECT   22   21    2   52                                                  
CONECT   23    8   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   31                                                  
CONECT   26   25   27   28                                                  
CONECT   27   26   53                                                       
CONECT   28   26   29   54                                                  
CONECT   29   28   30   55                                                  
CONECT   30   29   31   56                                                  
CONECT   31   30   32   25                                                  
CONECT   32   31   33    7                                                  
CONECT   33   32                                                            
CONECT   34    1                                                            
CONECT   35    1                                                            
CONECT   36    1                                                            
CONECT   37    3                                                            
CONECT   38    5                                                            
CONECT   39   10                                                            
CONECT   40   12                                                            
CONECT   41   13                                                            
CONECT   42   13                                                            
CONECT   43   14                                                            
CONECT   44   15                                                            
CONECT   45   15                                                            
CONECT   46   16                                                            
CONECT   47   17                                                            
CONECT   48   18                                                            
CONECT   49   19                                                            
CONECT   50   19                                                            
CONECT   51   19                                                            
CONECT   52   22                                                            
CONECT   53   27                                                            
CONECT   54   28                                                            
CONECT   55   29                                                            
CONECT   56   30                                                            
MASTER        0    0    0    0    0    0    0    0   56    0  120    0
END

RDKit          3D

56 60  0  0  0  0  0  0  0  0999 V2000
   -1.5468    4.2851    2.4323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5286    3.3410    1.8767 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8011    3.6326    1.8353 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7237    2.7163    1.3044 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0014    3.1591    1.3382 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3071    1.5291    0.8248 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1999    0.6192    0.3137 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7057   -0.5923   -0.1540 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3935   -0.9084   -0.1277 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0944   -2.0768   -0.5767 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5851    0.0060    0.3945 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9525   -0.4280    0.3618 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1915    0.1950    0.5807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4099   -0.6525    0.1928 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.2003   -0.0354   -0.8616 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0603   -2.0200   -0.2862 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6586   -2.8889    0.7043 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9720   -1.8539   -1.2881 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6215   -1.6258   -2.6283 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0148   -1.1032   -0.8807 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0685    1.1714    0.8416 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9209    2.1185    1.3783 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6833   -1.5682   -0.7104 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2272   -2.6572   -1.1287 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1042   -1.2741   -0.7672 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9770   -2.1955   -1.2874 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5775   -3.3966   -1.7624 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3550   -1.8676   -1.3252 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8281   -0.6737   -0.8631 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9237    0.2245   -0.3489 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5604   -0.0660   -0.2965 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6179    0.9059    0.2538 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1356    1.9368    0.6383 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6112    4.2541    3.5180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5359    4.1307    1.9158 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2180    5.3086    2.1049 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1281    4.5947    2.2247 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2905    4.0705    1.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2456   -2.8581   -0.9611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9592   -1.3861    1.0361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3984    1.1399   -0.0098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4441    0.3268    1.6659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1324   -0.8225    1.0157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7096    0.7598   -0.4101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9327   -0.7400   -1.1028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9404   -2.4787   -0.8297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0595   -2.5858    1.5575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5638   -2.9161   -1.4014 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9562   -0.6098   -2.8064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9969   -1.9692   -3.4780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5294   -2.2735   -2.6492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9256    1.8675    1.4132 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7729   -3.9009   -1.8775 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0261   -2.6018   -1.7365 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8720   -0.4401   -0.8983 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2815    1.1734    0.0202 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 18 20  1  0
 11 21  1  0
 21 22  2  0
  8 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  2  0
 26 27  1  0
 26 28  1  0
 28 29  2  0
 29 30  1  0
 30 31  2  0
 31 32  1  0
 32 33  2  0
 22  2  1  0
 31 25  1  0
 21  6  1  0
 32  7  1  0
 20 12  1  0
  1 34  1  0
  1 35  1  0
  1 36  1  0
  3 37  1  0
  5 38  1  0
 10 39  1  0
 12 40  1  1
 13 41  1  0
 13 42  1  0
 14 43  1  1
 15 44  1  0
 15 45  1  0
 16 46  1  6
 17 47  1  0
 18 48  1  6
 19 49  1  0
 19 50  1  0
 19 51  1  0
 22 52  1  0
 27 53  1  0
 28 54  1  0
 29 55  1  0
 30 56  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₅H₂₃NO₇

Average Mass

449.4590 Da

Monoisotopic Mass

449.14745 Da

IUPAC Name

5-[(2R,4R,5S,6R)-4-amino-5-hydroxy-6-methyloxan-2-yl]-1,6,8-trihydroxy-3-methyl-7,12-dihydrotetraphene-7,12-dione

Traditional Name

5-[(2R,4R,5S,6R)-4-amino-5-hydroxy-6-methyloxan-2-yl]-1,6,8-trihydroxy-3-methyltetraphene-7,12-dione

CAS Registry Number

Not Available

SMILES

C[C@H]1O[C@H](C[C@@H](N)[C@@H]1O)C1=C(O)C2=C(C(=O)C3=C(C(O)=CC=C3)C2=O)C2=C(O)C=C(C)C=C12

InChI Identifier

InChI=1S/C25H23NO7/c1-9-6-12-17(15(28)7-9)20-21(24(31)18-11(23(20)30)4-3-5-14(18)27)25(32)19(12)16-8-13(26)22(29)10(2)33-16/h3-7,10,13,16,22,27-29,32H,8,26H2,1-2H3/t10-,13-,16-,22-/m1/s1

InChI Key

YNBJLMMIDVNPQX-WZSPRZBJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	29515228

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.07	ALOGPS
logP	2.64	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	7.41	ChemAxon
pKa (Strongest Basic)	9.5	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	150.31 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	120.72 m³·mol⁻¹	ChemAxon
Polarizability	47.41 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA021749

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78439874

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139589525

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Bo ST, Xu ZF, Yang L, Cheng P, Tan RX, Jiao RH, Ge HM: Structure and biosynthesis of mayamycin B, a new polyketide with antibacterial activity from Streptomyces sp. 120454. J Antibiot (Tokyo). 2018 Jun;71(6):601-605. doi: 10.1038/s41429-018-0039-x. Epub 2018 Mar 7. [PubMed:29515228 ]

Showing NP-Card for Mayamycin B (NP0017749)

MOL for NP0017749 (Mayamycin B)

3D MOL for NP0017749 (Mayamycin B)

3D SDF for NP0017749 (Mayamycin B)

3D-SDF for NP0017749 (Mayamycin B)

PDB for NP0017749 (Mayamycin B)

3D PDB for NP0017749 (Mayamycin B)

SMILES for NP0017749 (Mayamycin B)

INCHI for NP0017749 (Mayamycin B)

Structure for NP0017749 (Mayamycin B)

3D Structure for NP0017749 (Mayamycin B)