Np mrd loader

Record Information
Version2.0
Created at2021-01-06 02:01:20 UTC
Updated at2021-07-15 17:25:00 UTC
NP-MRD IDNP0017262
Secondary Accession NumbersNone
Natural Product Identification
Common NameChrysobactin
Provided ByNPAtlasNPAtlas Logo
DescriptionChrysobactin is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Chrysobactin is found in Dickeya chrysanthemi, Erwinia and Pseudomonas luteola. Chrysobactin was first documented in 1989 (PMID: 2914949). Based on a literature review a small amount of articles have been published on Chrysobactin (PMID: 18803373) (PMID: 12231882) (PMID: 1392469) (PMID: 1787788).
Structure
Data?1624506387
Synonyms
ValueSource
2-(2,3-Dihydroxybenzoyl)-D-lysyl-L-serineChEBI
N-(N(2)-(2,3-Dihydroxybenzoyl)lysyl)serineMeSH
Chemical FormulaC16H23N3O7
Average Mass369.3740 Da
Monoisotopic Mass369.15360 Da
IUPAC Name(2S)-2-[(2R)-6-amino-2-[(2,3-dihydroxyphenyl)formamido]hexanamido]-3-hydroxypropanoic acid
Traditional Namechrysobactin
CAS Registry NumberNot Available
SMILES
NCCCC[C@@H](NC(=O)C1=C(O)C(O)=CC=C1)C(=O)N[C@@H](CO)C(O)=O
InChI Identifier
InChI=1S/C16H23N3O7/c17-7-2-1-5-10(15(24)19-11(8-20)16(25)26)18-14(23)9-4-3-6-12(21)13(9)22/h3-4,6,10-11,20-22H,1-2,5,7-8,17H2,(H,18,23)(H,19,24)(H,25,26)/t10-,11+/m1/s1
InChI KeyNNTXFOAPABMVEG-MNOVXSKESA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Dickeya chrysanthemiLOTUS Database
ErwiniaNPAtlas
Pseudomonas luteolaLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-2ALOGPS
logP-2.8ChemAxon
logS-2.4ALOGPS
pKa (Strongest Acidic)2.95ChemAxon
pKa (Strongest Basic)10.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area182.21 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity90.73 m³·mol⁻¹ChemAxon
Polarizability36.7 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA009561
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID114328
KEGG Compound IDNot Available
BioCyc IDCPD-12582
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound129039
PDB IDNot Available
ChEBI ID61345
Good Scents IDNot Available
References
General References
  1. Persmark M, Expert D, Neilands JB: Isolation, characterization, and synthesis of chrysobactin, a compound with siderophore activity from Erwinia chrysanthemi. J Biol Chem. 1989 Feb 25;264(6):3187-93. [PubMed:2914949 ]
  2. Tomisic V, Blanc S, Elhabiri M, Expert D, Albrecht-Gary AM: Iron(III) uptake and release by chrysobactin, a siderophore of the phytophatogenic bacterium Erwinia chrysanthemi. Inorg Chem. 2008 Oct 20;47(20):9419-30. doi: 10.1021/ic801143e. Epub 2008 Sep 20. [PubMed:18803373 ]
  3. Neema C, Laulhere JP, Expert D: Iron Deficiency Induced by Chrysobactin in Saintpaulia Leaves Inoculated with Erwinia chrysanthemi. Plant Physiol. 1993 Jul;102(3):967-973. doi: 10.1104/pp.102.3.967. [PubMed:12231882 ]
  4. Persmark M, Neilands JB: Iron(III) complexes of chrysobactin, the siderophore of Erwinia chrysanthemi. Biometals. 1992 Spring;5(1):29-36. doi: 10.1007/BF01079695. [PubMed:1392469 ]
  5. Franza T, Enard C, van Gijsegem F, Expert D: Genetic analysis of the Erwinia chrysanthemi 3937 chrysobactin iron-transport system: characterization of a gene cluster involved in uptake and biosynthetic pathways. Mol Microbiol. 1991 Jun;5(6):1319-29. doi: 10.1111/j.1365-2958.1991.tb00778.x. [PubMed:1787788 ]