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Record Information
Version1.0
Created at2021-01-06 01:52:11 UTC
Updated at2021-07-15 17:24:24 UTC
NP-MRD IDNP0017043
Secondary Accession NumbersNone
Natural Product Identification
Common NameThioholgamide A
Provided ByNPAtlasNPAtlas Logo
Description Thioholgamide A is found in Streptomyces. It was first documented in 2017 (PMID: 28981254). Based on a literature review very few articles have been published on CHEMBL4172007.
Structure
Thumb
Synonyms
ValueSource
5-({9-benzyl-5,8,11,14,17-pentahydroxy-18-[(1-hydroxy-2-{[2-({2-[(1-hydroxy-2-{[2-({2-[(1-hydroxy-2-oxopropylidene)amino]-3-methyl-1-sulphanylbutylidene}amino)-4-(methylsulphanyl)-1-sulphanylbutylidene]amino}propylidene)amino]-1-sulphanylpropylidene}amino)-1-sulphanylpropylidene]amino}propylidene)amino]-12,19-dimethyl-15-(propan-2-yl)-1-thia-4,7,10,13,16-pentaazacyclononadeca-2,4,7,10,13,16-hexaen-6-yl}(hydroxy)methyl)-1,3-dimethyl-1H-imidazol-3-iumGenerator
Chemical FormulaC56H85N14O10S6
Average Mass1306.7400 Da
Monoisotopic Mass1305.48919 Da
IUPAC Name5-[(R)-[(2Z,6S,9R,12R,15S,18R,19R)-9-benzyl-12,19-dimethyl-18-[(2S)-2-[(2R)-2-[(2R)-2-[(2S)-2-[(2S)-2-[(2S)-3-methyl-2-(2-oxopropanamido)butanethioamido]-4-(methylsulfanyl)butanethioamido]propanamido]propanethioamido]propanethioamido]propanamido]-5,8,11,14,17-pentaoxo-15-(propan-2-yl)-1-thia-4,7,10,13,16-pentaazacyclononadec-2-en-6-yl](hydroxy)methyl]-1,3-dimethyl-1H-imidazol-3-ium
Traditional Name4-[(R)-[(2Z,6S,9R,12R,15S,18R,19R)-9-benzyl-15-isopropyl-12,19-dimethyl-18-[(2S)-2-[(2R)-2-[(2R)-2-[(2S)-2-[(2S)-2-[(2S)-3-methyl-2-(2-oxopropanamido)butanethioamido]-4-(methylsulfanyl)butanethioamido]propanamido]propanethioamido]propanethioamido]propanamido]-5,8,11,14,17-pentaoxo-1-thia-4,7,10,13,16-pentaazacyclononadec-2-en-6-yl](hydroxy)methyl]-1,3-dimethylimidazol-1-ium
CAS Registry NumberNot Available
SMILES
CSCCC(NC(=S)C(NC(=O)C(C)=O)C(C)C)C(=S)NC(C)C(=O)NC(C)C(=S)NC(C)C(=S)NC(C)C(=O)NC1C(C)S\C=C/NC(=O)C(NC(=O)C(CC2=CC=CC=C2)NC(=O)C(C)NC(=O)C(NC1=O)C(C)C)C(O)C1=C[N+](C)=CN1C
InChI Identifier
InChI=1S/C56H84N14O10S6/c1-27(2)40-51(79)58-29(5)46(74)63-38(24-36-18-16-15-17-19-36)49(77)68-43(44(72)39-25-69(12)26-70(39)13)50(78)57-21-23-86-35(11)42(52(80)65-40)67-47(75)31(7)60-54(82)33(9)62-53(81)32(8)59-45(73)30(6)61-55(83)37(20-22-85-14)64-56(84)41(28(3)4)66-48(76)34(10)71/h15-19,21,23,25-33,35,37-38,40-44,72H,20,22,24H2,1-14H3,(H11-,57,58,59,60,61,62,63,64,65,66,67,68,73,74,75,76,77,78,79,80,81,82,83,84)/p+1/b23-21-
InChI KeyFRMXVRMEEBFTBC-LNVKXUELSA-O
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.25ALOGPS
logP-3.2ChemAxon
logS-5.8ALOGPS
pKa (Strongest Acidic)10.21ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count13ChemAxon
Polar Surface Area327.03 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity349.56 m³·mol⁻¹ChemAxon
Polarizability140.1 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA019832
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID64849027
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound145951580
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kjaerulff L, Sikandar A, Zaburannyi N, Adam S, Herrmann J, Koehnke J, Muller R: Thioholgamides: Thioamide-Containing Cytotoxic RiPP Natural Products. ACS Chem Biol. 2017 Nov 17;12(11):2837-2841. doi: 10.1021/acschembio.7b00676. Epub 2017 Oct 17. [PubMed:28981254 ]