NP-MRD: Showing NP-Card for Gordonic acid (NP0016928)

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Record Information

Version

2.0

Created at

2021-01-06 01:46:57 UTC

Updated at

2021-07-15 17:24:05 UTC

NP-MRD ID

NP0016928

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Gordonic acid

Provided By

NPAtlas

Description

Gordonic acid is also known as gordonate. Gordonic acid is found in bacterium. Gordonic acid was first documented in 2017 (PMID: 28845982). Based on a literature review very few articles have been published on Gordonic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242104193D          

 66 66  0  0  0  0            999 V2000
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M  END

     RDKit          3D

 66 66  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306242104193D          

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   -2.0320   -0.3099    1.8932 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5604    0.9823    2.5571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0728   -0.8954    0.9841 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3821    0.0533    0.0394 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6316    0.5293   -0.0083 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8769    1.9775    0.1300 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3906    2.7983   -1.0439 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.3470    3.7455   -1.4472 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0524    1.9397   -2.2205 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2510    2.7264   -3.3792 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8215    0.6805   -2.3321 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9998   -0.2834   -3.1996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2584    0.0986   -1.1909 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5834   -2.1877    0.4046 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3579   -2.1154   -0.4353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6546   -2.9078   -0.3960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2642   -2.2837    2.3838 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3689   -1.7783    2.8888 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5037    0.8092    0.1546 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9969   -1.1057    1.9628 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8190    0.8817   -0.2808 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3216   -1.0111    1.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2799    0.9755   -0.7630 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6940   -0.9729    1.0923 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6933    0.9917   -1.1542 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0745   -0.9386    0.6867 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.6006   -0.3893    0.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8020    0.8569    0.4692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8152   -1.0332    2.7270 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6193    0.8705    2.8249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3728    1.7868    1.8226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8911    1.1579    3.4166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9689   -1.1382    1.6190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2272    0.0143    0.8073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5306    2.4638    1.0371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0028    2.1150    0.1331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4807    3.3851   -0.7844 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1709    3.2930   -1.7922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9529    1.7212   -2.2089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7564    3.5596   -3.3554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7309    0.9011   -2.9676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9875   -0.4349   -2.7458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5415   -1.2310   -3.2213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8237    0.1577   -4.1945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3606   -2.9362    1.2343 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4676   -2.6129    0.0390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4848   -2.7325   -1.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1288   -1.1162   -0.7999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5656   -3.9977   -0.3355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5646   -2.5549   -1.4534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6504   -2.5988   -0.0169 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  2 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 17 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 27 19  1  0  0  0  0
  1 31  1  0  0  0  0
  1 32  1  0  0  0  0
  1 33  1  0  0  0  0
  3 34  1  0  0  0  0
  4 35  1  0  0  0  0
  5 36  1  0  0  0  0
  6 37  1  0  0  0  0
  7 38  1  0  0  0  0
  8 39  1  0  0  0  0
  9 40  1  0  0  0  0
 10 41  1  0  0  0  0
 13 42  1  0  0  0  0
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 15 44  1  1  0  0  0
 16 45  1  0  0  0  0
 16 46  1  0  0  0  0
 16 47  1  0  0  0  0
 17 48  1  1  0  0  0
 19 49  1  1  0  0  0
 20 50  1  0  0  0  0
 20 51  1  0  0  0  0
 21 52  1  1  0  0  0
 22 53  1  0  0  0  0
 23 54  1  1  0  0  0
 24 55  1  0  0  0  0
 25 56  1  6  0  0  0
 26 57  1  0  0  0  0
 26 58  1  0  0  0  0
 26 59  1  0  0  0  0
 28 60  1  1  0  0  0
 29 61  1  0  0  0  0
 29 62  1  0  0  0  0
 29 63  1  0  0  0  0
 30 64  1  0  0  0  0
 30 65  1  0  0  0  0
 30 66  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0016928

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)C(\[H])=C(/[H])\C(\[H])=C(/[H])\C(\[H])=C(/[H])\C(\[H])=C(/[H])\C(=C(/[H])[C@@]([H])(C([H])([H])[H])[C@@]([H])(O[C@]1([H])O[C@]([H])(C([H])([H])[H])[C@@]([H])(O[H])[C@@]([H])(O[H])C1([H])[H])C([H])(C([H])([H])[H])C([H])([H])[H])\C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C24H36O6/c1-16(2)24(30-22-15-20(25)23(28)19(5)29-22)18(4)14-17(3)12-10-8-6-7-9-11-13-21(26)27/h6-14,16,18-20,22-25,28H,15H2,1-5H3,(H,26,27)/b8-6+,9-7+,12-10+,13-11+,17-14+/t18-,19-,20+,22+,23-,24+/m1/s1

> <INCHI_KEY>
ZOGIGJKRUBEBDV-DYONNZCLSA-N

> <FORMULA>
C24H36O6

> <MOLECULAR_WEIGHT>
420.546

> <EXACT_MASS>
420.251188879

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
48.32415780415937

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E,4E,6E,8E,10E,12R,13S)-13-{[(2R,4S,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-10,12,14-trimethylpentadeca-2,4,6,8,10-pentaenoic acid

> <ALOGPS_LOGP>
3.98

> <JCHEM_LOGP>
4.125451756999999

> <ALOGPS_LOGS>
-4.36

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.151209209411125

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.884221254818504

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2525585322761943

> <JCHEM_POLAR_SURFACE_AREA>
96.22000000000001

> <JCHEM_REFRACTIVITY>
122.29590000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.85e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2E,4E,6E,8E,10E,12R,13S)-13-{[(2R,4S,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-10,12,14-trimethylpentadeca-2,4,6,8,10-pentaenoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 66 66  0  0  0  0  0  0  0  0999 V2000
    0.3584   -1.4122    2.7004 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4017   -0.4058    1.6195 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6072    0.0494    0.9479 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8272   -0.3772    1.2133 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9870    0.1464    0.4759 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2102   -0.2602    0.7191 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3791    0.2381    0.0071 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5762   -0.2279    0.3177 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7853    0.2522   -0.3810 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9779   -0.1934   -0.0917 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1865    0.2660   -0.7682 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1343    1.1280   -1.6769 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.4328   -0.2368   -0.4271 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7734    0.1050    1.2567 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0320   -0.3099    1.8932 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5604    0.9823    2.5571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0728   -0.8954    0.9841 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3821    0.0533    0.0394 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6316    0.5293   -0.0083 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8769    1.9775    0.1300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3906    2.7983   -1.0439 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.3470    3.7455   -1.4472 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0524    1.9397   -2.2205 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2510    2.7264   -3.3792 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8215    0.6805   -2.3321 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9998   -0.2834   -3.1996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2584    0.0986   -1.1909 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5834   -2.1877    0.4046 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3579   -2.1154   -0.4353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6546   -2.9078   -0.3960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2642   -2.2837    2.3838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0096   -0.9783    3.6562 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3689   -1.7783    2.8888 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5037    0.8092    0.1546 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9969   -1.1057    1.9628 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8190    0.8817   -0.2808 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3216   -1.0111    1.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2799    0.9755   -0.7630 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6940   -0.9729    1.0923 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6933    0.9917   -1.1542 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0745   -0.9386    0.6867 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.6006   -0.3893    0.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8020    0.8569    0.4692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8152   -1.0332    2.7270 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6193    0.8705    2.8249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3728    1.7868    1.8226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8911    1.1579    3.4166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9689   -1.1382    1.6190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2272    0.0143    0.8073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5306    2.4638    1.0371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0028    2.1150    0.1331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4807    3.3851   -0.7844 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1709    3.2930   -1.7922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9529    1.7212   -2.2089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7564    3.5596   -3.3554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7309    0.9011   -2.9676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9875   -0.4349   -2.7458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5415   -1.2310   -3.2213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8237    0.1577   -4.1945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3606   -2.9362    1.2343 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4676   -2.6129    0.0390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4848   -2.7325   -1.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1288   -1.1162   -0.7999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5656   -3.9977   -0.3355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5646   -2.5549   -1.4534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6504   -2.5988   -0.0169 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
  2 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  0
 17 28  1  0
 28 29  1  0
 28 30  1  0
 27 19  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  6 37  1  0
  7 38  1  0
  8 39  1  0
  9 40  1  0
 10 41  1  0
 13 42  1  0
 14 43  1  0
 15 44  1  1
 16 45  1  0
 16 46  1  0
 16 47  1  0
 17 48  1  1
 19 49  1  1
 20 50  1  0
 20 51  1  0
 21 52  1  1
 22 53  1  0
 23 54  1  1
 24 55  1  0
 25 56  1  6
 26 57  1  0
 26 58  1  0
 26 59  1  0
 28 60  1  1
 29 61  1  0
 29 62  1  0
 29 63  1  0
 30 64  1  0
 30 65  1  0
 30 66  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       0.358  -1.412   2.700  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.402  -0.406   1.619  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.607   0.049   0.948  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.827  -0.377   1.213  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.987   0.146   0.476  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.210  -0.260   0.719  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.379   0.238   0.007  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.576  -0.228   0.318  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.785   0.252  -0.381  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.978  -0.193  -0.092  0.00  0.00           C+0
HETATM   11  C   UNK     0      11.187   0.266  -0.768  0.00  0.00           C+0
HETATM   12  O   UNK     0      11.134   1.128  -1.677  0.00  0.00           O+0
HETATM   13  O   UNK     0      12.433  -0.237  -0.427  0.00  0.00           O+0
HETATM   14  C   UNK     0      -0.773   0.105   1.257  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.032  -0.310   1.893  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.560   0.982   2.557  0.00  0.00           C+0
HETATM   17  C   UNK     0      -3.073  -0.895   0.984  0.00  0.00           C+0
HETATM   18  O   UNK     0      -3.382   0.053   0.039  0.00  0.00           O+0
HETATM   19  C   UNK     0      -4.632   0.529  -0.008  0.00  0.00           C+0
HETATM   20  C   UNK     0      -4.877   1.978   0.130  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.391   2.798  -1.044  0.00  0.00           C+0
HETATM   22  O   UNK     0      -5.347   3.745  -1.447  0.00  0.00           O+0
HETATM   23  C   UNK     0      -4.052   1.940  -2.220  0.00  0.00           C+0
HETATM   24  O   UNK     0      -4.251   2.726  -3.379  0.00  0.00           O+0
HETATM   25  C   UNK     0      -4.822   0.681  -2.332  0.00  0.00           C+0
HETATM   26  C   UNK     0      -4.000  -0.283  -3.200  0.00  0.00           C+0
HETATM   27  O   UNK     0      -5.258   0.099  -1.191  0.00  0.00           O+0
HETATM   28  C   UNK     0      -2.583  -2.188   0.405  0.00  0.00           C+0
HETATM   29  C   UNK     0      -1.358  -2.115  -0.435  0.00  0.00           C+0
HETATM   30  C   UNK     0      -3.655  -2.908  -0.396  0.00  0.00           C+0
HETATM   31  H   UNK     0      -0.264  -2.284   2.384  0.00  0.00           H+0
HETATM   32  H   UNK     0      -0.010  -0.978   3.656  0.00  0.00           H+0
HETATM   33  H   UNK     0       1.369  -1.778   2.889  0.00  0.00           H+0
HETATM   34  H   UNK     0       1.504   0.809   0.155  0.00  0.00           H+0
HETATM   35  H   UNK     0       2.997  -1.106   1.963  0.00  0.00           H+0
HETATM   36  H   UNK     0       3.819   0.882  -0.281  0.00  0.00           H+0
HETATM   37  H   UNK     0       5.322  -1.011   1.501  0.00  0.00           H+0
HETATM   38  H   UNK     0       6.280   0.976  -0.763  0.00  0.00           H+0
HETATM   39  H   UNK     0       7.694  -0.973   1.092  0.00  0.00           H+0
HETATM   40  H   UNK     0       8.693   0.992  -1.154  0.00  0.00           H+0
HETATM   41  H   UNK     0      10.075  -0.939   0.687  0.00  0.00           H+0
HETATM   42  H   UNK     0      12.601  -0.389   0.575  0.00  0.00           H+0
HETATM   43  H   UNK     0      -0.802   0.857   0.469  0.00  0.00           H+0
HETATM   44  H   UNK     0      -1.815  -1.033   2.727  0.00  0.00           H+0
HETATM   45  H   UNK     0      -3.619   0.871   2.825  0.00  0.00           H+0
HETATM   46  H   UNK     0      -2.373   1.787   1.823  0.00  0.00           H+0
HETATM   47  H   UNK     0      -1.891   1.158   3.417  0.00  0.00           H+0
HETATM   48  H   UNK     0      -3.969  -1.138   1.619  0.00  0.00           H+0
HETATM   49  H   UNK     0      -5.227   0.014   0.807  0.00  0.00           H+0
HETATM   50  H   UNK     0      -4.531   2.464   1.037  0.00  0.00           H+0
HETATM   51  H   UNK     0      -6.003   2.115   0.133  0.00  0.00           H+0
HETATM   52  H   UNK     0      -3.481   3.385  -0.784  0.00  0.00           H+0
HETATM   53  H   UNK     0      -6.171   3.293  -1.792  0.00  0.00           H+0
HETATM   54  H   UNK     0      -2.953   1.721  -2.209  0.00  0.00           H+0
HETATM   55  H   UNK     0      -3.756   3.560  -3.355  0.00  0.00           H+0
HETATM   56  H   UNK     0      -5.731   0.901  -2.968  0.00  0.00           H+0
HETATM   57  H   UNK     0      -2.987  -0.435  -2.746  0.00  0.00           H+0
HETATM   58  H   UNK     0      -4.542  -1.231  -3.221  0.00  0.00           H+0
HETATM   59  H   UNK     0      -3.824   0.158  -4.194  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.361  -2.936   1.234  0.00  0.00           H+0
HETATM   61  H   UNK     0      -0.468  -2.613   0.039  0.00  0.00           H+0
HETATM   62  H   UNK     0      -1.485  -2.732  -1.388  0.00  0.00           H+0
HETATM   63  H   UNK     0      -1.129  -1.116  -0.800  0.00  0.00           H+0
HETATM   64  H   UNK     0      -3.566  -3.998  -0.336  0.00  0.00           H+0
HETATM   65  H   UNK     0      -3.565  -2.555  -1.453  0.00  0.00           H+0
HETATM   66  H   UNK     0      -4.650  -2.599  -0.017  0.00  0.00           H+0
CONECT    1    2   31   32   33                                             
CONECT    2    1    3   14                                                  
CONECT    3    2    4   34                                                  
CONECT    4    3    5   35                                                  
CONECT    5    4    6   36                                                  
CONECT    6    5    7   37                                                  
CONECT    7    6    8   38                                                  
CONECT    8    7    9   39                                                  
CONECT    9    8   10   40                                                  
CONECT   10    9   11   41                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   42                                                       
CONECT   14    2   15   43                                                  
CONECT   15   14   16   17   44                                             
CONECT   16   15   45   46   47                                             
CONECT   17   15   18   28   48                                             
CONECT   18   17   19                                                       
CONECT   19   18   20   27   49                                             
CONECT   20   19   21   50   51                                             
CONECT   21   20   22   23   52                                             
CONECT   22   21   53                                                       
CONECT   23   21   24   25   54                                             
CONECT   24   23   55                                                       
CONECT   25   23   26   27   56                                             
CONECT   26   25   57   58   59                                             
CONECT   27   25   19                                                       
CONECT   28   17   29   30   60                                             
CONECT   29   28   61   62   63                                             
CONECT   30   28   64   65   66                                             
CONECT   31    1                                                            
CONECT   32    1                                                            
CONECT   33    1                                                            
CONECT   34    3                                                            
CONECT   35    4                                                            
CONECT   36    5                                                            
CONECT   37    6                                                            
CONECT   38    7                                                            
CONECT   39    8                                                            
CONECT   40    9                                                            
CONECT   41   10                                                            
CONECT   42   13                                                            
CONECT   43   14                                                            
CONECT   44   15                                                            
CONECT   45   16                                                            
CONECT   46   16                                                            
CONECT   47   16                                                            
CONECT   48   17                                                            
CONECT   49   19                                                            
CONECT   50   20                                                            
CONECT   51   20                                                            
CONECT   52   21                                                            
CONECT   53   22                                                            
CONECT   54   23                                                            
CONECT   55   24                                                            
CONECT   56   25                                                            
CONECT   57   26                                                            
CONECT   58   26                                                            
CONECT   59   26                                                            
CONECT   60   28                                                            
CONECT   61   29                                                            
CONECT   62   29                                                            
CONECT   63   29                                                            
CONECT   64   30                                                            
CONECT   65   30                                                            
CONECT   66   30                                                            
MASTER        0    0    0    0    0    0    0    0   66    0  132    0
END

RDKit          3D

66 66  0  0  0  0  0  0  0  0999 V2000
    0.3584   -1.4122    2.7004 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4017   -0.4058    1.6195 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6072    0.0494    0.9479 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8272   -0.3772    1.2133 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9870    0.1464    0.4759 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2102   -0.2602    0.7191 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3791    0.2381    0.0071 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5762   -0.2279    0.3177 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7853    0.2522   -0.3810 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9779   -0.1934   -0.0917 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1865    0.2660   -0.7682 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1343    1.1280   -1.6769 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.4328   -0.2368   -0.4271 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7734    0.1050    1.2567 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0320   -0.3099    1.8932 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.5604    0.9823    2.5571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0728   -0.8954    0.9841 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3821    0.0533    0.0394 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6316    0.5293   -0.0083 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8769    1.9775    0.1300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3906    2.7983   -1.0439 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.3470    3.7455   -1.4472 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0524    1.9397   -2.2205 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2510    2.7264   -3.3792 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8215    0.6805   -2.3321 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9998   -0.2834   -3.1996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2584    0.0986   -1.1909 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5834   -2.1877    0.4046 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3579   -2.1154   -0.4353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6546   -2.9078   -0.3960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2642   -2.2837    2.3838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0096   -0.9783    3.6562 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3689   -1.7783    2.8888 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5037    0.8092    0.1546 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9969   -1.1057    1.9628 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8190    0.8817   -0.2808 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3216   -1.0111    1.5008 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2799    0.9755   -0.7630 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6940   -0.9729    1.0923 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6933    0.9917   -1.1542 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0745   -0.9386    0.6867 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.6006   -0.3893    0.5745 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8020    0.8569    0.4692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8152   -1.0332    2.7270 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6193    0.8705    2.8249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3728    1.7868    1.8226 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8911    1.1579    3.4166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9689   -1.1382    1.6190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2272    0.0143    0.8073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5306    2.4638    1.0371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0028    2.1150    0.1331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4807    3.3851   -0.7844 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1709    3.2930   -1.7922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9529    1.7212   -2.2089 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7564    3.5596   -3.3554 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7309    0.9011   -2.9676 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9875   -0.4349   -2.7458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5415   -1.2310   -3.2213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8237    0.1577   -4.1945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3606   -2.9362    1.2343 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4676   -2.6129    0.0390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4848   -2.7325   -1.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1288   -1.1162   -0.7999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5656   -3.9977   -0.3355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5646   -2.5549   -1.4534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6504   -2.5988   -0.0169 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
  2 14  2  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 27  1  0
 17 28  1  0
 28 29  1  0
 28 30  1  0
 27 19  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  3 34  1  0
  4 35  1  0
  5 36  1  0
  6 37  1  0
  7 38  1  0
  8 39  1  0
  9 40  1  0
 10 41  1  0
 13 42  1  0
 14 43  1  0
 15 44  1  1
 16 45  1  0
 16 46  1  0
 16 47  1  0
 17 48  1  1
 19 49  1  1
 20 50  1  0
 20 51  1  0
 21 52  1  1
 22 53  1  0
 23 54  1  1
 24 55  1  0
 25 56  1  6
 26 57  1  0
 26 58  1  0
 26 59  1  0
 28 60  1  1
 29 61  1  0
 29 62  1  0
 29 63  1  0
 30 64  1  0
 30 65  1  0
 30 66  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
Gordonate	Generator
(2E,4E,6E,8E,10E,12R,13S)-13-{[(2R,4S,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-10,12,14-trimethylpentadeca-2,4,6,8,10-pentaenoate	Generator

Chemical Formula

C₂₄H₃₆O₆

Average Mass

420.5460 Da

Monoisotopic Mass

420.25119 Da

IUPAC Name

(2E,4E,6E,8E,10E,12R,13S)-13-{[(2R,4S,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-10,12,14-trimethylpentadeca-2,4,6,8,10-pentaenoic acid

Traditional Name

(2E,4E,6E,8E,10E,12R,13S)-13-{[(2R,4S,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-10,12,14-trimethylpentadeca-2,4,6,8,10-pentaenoic acid

CAS Registry Number

Not Available

SMILES

CC(C)[C@H](O[C@H]1C[C@H](O)[C@H](O)[C@@H](C)O1)[C@H](C)\C=C(/C)\C=C\C=C\C=C\C=C\C(O)=O

InChI Identifier

InChI=1S/C24H36O6/c1-16(2)24(30-22-15-20(25)23(28)19(5)29-22)18(4)14-17(3)12-10-8-6-7-9-11-13-21(26)27/h6-14,16,18-20,22-25,28H,15H2,1-5H3,(H,26,27)/b8-6+,9-7+,12-10+,13-11+,17-14+/t18-,19-,20+,22+,23-,24+/m1/s1

InChI Key

ZOGIGJKRUBEBDV-DYONNZCLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Bacterium; sewage; soil	NPAtlas	28845982

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.98	ALOGPS
logP	4.13	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	4.88	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	96.22 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	122.3 m³·mol⁻¹	ChemAxon
Polarizability	48.32 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA022445

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78439879

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139589796

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Park HB, Park JS, Lee SI, Shin B, Oh DC, Kwon HC: Gordonic Acid, a Polyketide Glycoside Derived from Bacterial Coculture of Streptomyces and Gordonia Species. J Nat Prod. 2017 Sep 22;80(9):2542-2546. doi: 10.1021/acs.jnatprod.7b00293. Epub 2017 Aug 28. [PubMed:28845982 ]

Showing NP-Card for Gordonic acid (NP0016928)

MOL for NP0016928 (Gordonic acid)

3D MOL for NP0016928 (Gordonic acid)

3D SDF for NP0016928 (Gordonic acid)

3D-SDF for NP0016928 (Gordonic acid)

PDB for NP0016928 (Gordonic acid)

3D PDB for NP0016928 (Gordonic acid)

SMILES for NP0016928 (Gordonic acid)

INCHI for NP0016928 (Gordonic acid)

Structure for NP0016928 (Gordonic acid)

3D Structure for NP0016928 (Gordonic acid)