NP-MRD: Showing NP-Card for 9-deoxy-seco-PF1233 B carboxylic acid (NP0016862)

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Record Information

Version

2.0

Created at

2021-01-06 01:44:05 UTC

Updated at

2021-07-15 17:23:53 UTC

NP-MRD ID

NP0016862

Secondary Accession Numbers

None

Natural Product Identification

Common Name

9-deoxy-seco-PF1233 B carboxylic acid

Provided By

NPAtlas

Description

9-deoxy-seco-PF1233 B carboxylic acid is found in Aspergillus. Based on a literature review very few articles have been published on 9-deoxy-seco-PF1233 B carboxylic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242104183D          

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M  END

     RDKit          3D

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  Mrv1652306242104183D          

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   -5.1214   -1.6950   -1.0102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1559   -2.2878    0.2348 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2575   -1.9056    1.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3366   -0.9314    0.9266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3047   -0.3267   -0.3436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0121    3.4996    1.1447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4934    4.5811   -0.2605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0958    3.5005   -1.7127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6634    3.3536   -0.2991 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9799    1.5615   -0.4764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2503    2.5067   -1.8277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7580    1.4057    1.6534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0847    3.0212    1.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9231    1.7094    1.7495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4004    1.4318   -0.8026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9303    0.5421    0.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7356   -1.5408   -0.3998 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6686    0.2655   -0.7507 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9408   -0.1671    1.7128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8180   -1.7561    2.8273 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6441   -0.3522   -0.5952 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7888   -2.1593   -0.4565 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2881    1.1089    0.5077 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5761    1.3988    1.3834 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8939   -0.5444    2.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9497   -2.7747    1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6861   -3.1035    0.9049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1637   -1.3209   -4.2217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4173   -0.0690   -3.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8128   -1.9760   -1.7926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8761   -3.0590    0.4823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2973   -2.3816    2.1836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6328   -0.6472    1.6906 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  6  3  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
  8 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
  6 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32  6  1  0  0  0  0
 20 15  1  0  0  0  0
 32 27  1  0  0  0  0
  1 33  1  0  0  0  0
  1 34  1  0  0  0  0
  2 35  1  0  0  0  0
  4 36  1  0  0  0  0
  4 37  1  0  0  0  0
  4 38  1  0  0  0  0
  5 39  1  0  0  0  0
  5 40  1  0  0  0  0
  5 41  1  0  0  0  0
  7 42  1  0  0  0  0
  7 43  1  0  0  0  0
  8 44  1  1  0  0  0
  9 45  1  0  0  0  0
 12 46  1  1  0  0  0
 13 47  1  0  0  0  0
 14 48  1  0  0  0  0
 14 49  1  0  0  0  0
 16 50  1  0  0  0  0
 17 51  1  0  0  0  0
 18 52  1  0  0  0  0
 19 53  1  0  0  0  0
 20 54  1  0  0  0  0
 23 55  1  0  0  0  0
 26 56  1  0  0  0  0
 28 57  1  0  0  0  0
 29 58  1  0  0  0  0
 30 59  1  0  0  0  0
 31 60  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0016862

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]OC(=O)[C@@]([H])(N([H])C(=O)[C@@]([H])(O[H])C([H])([H])C1=C([H])C([H])=C([H])C([H])=C1[H])C([H])([H])[C@]1(C(=O)N([H])C2=C([H])C([H])=C([H])C([H])=C12)C(C([H])=C([H])[H])(C([H])([H])[H])C([H])([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C25H28N2O5/c1-4-24(2,3)25(17-12-8-9-13-18(17)27-23(25)32)15-19(22(30)31)26-21(29)20(28)14-16-10-6-5-7-11-16/h4-13,19-20,28H,1,14-15H2,2-3H3,(H,26,29)(H,27,32)(H,30,31)/t19-,20-,25-/m0/s1

> <INCHI_KEY>
QZMIWNADYPPZTF-RLSLOFABSA-N

> <FORMULA>
C25H28N2O5

> <MOLECULAR_WEIGHT>
436.508

> <EXACT_MASS>
436.19982201

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
46.17573720761863

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S)-2-[(2S)-2-hydroxy-3-phenylpropanamido]-3-[(3S)-3-(2-methylbut-3-en-2-yl)-2-oxo-2,3-dihydro-1H-indol-3-yl]propanoic acid

> <ALOGPS_LOGP>
2.42

> <JCHEM_LOGP>
3.1609033419999992

> <ALOGPS_LOGS>
-4.31

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.674385758434148

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.8938014014154607

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6358520820835016

> <JCHEM_POLAR_SURFACE_AREA>
115.73000000000002

> <JCHEM_REFRACTIVITY>
121.2062

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.15e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-[(2S)-2-hydroxy-3-phenylpropanamido]-3-[(3S)-3-(2-methylbut-3-en-2-yl)-2-oxo-1H-indol-3-yl]propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 60 62  0  0  0  0  0  0  0  0999 V2000
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   -2.8663    1.9962    1.2693 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.0478    0.5363   -0.5179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3211   -0.6616   -0.9805 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0494   -0.4948   -0.3965 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5241   -1.3464    0.6264 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8205   -2.2894    1.0995 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8801   -1.1728    1.1973 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1676   -2.1179    2.1684 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9196   -1.1894    0.1041 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2870   -1.0197    0.6291 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8414    0.2375    0.7732 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1283    0.4156    1.2644 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8872   -0.6688    1.6221 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3520   -1.9295    1.4857 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0621   -2.0995    0.9930 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1637   -0.9294   -2.3874 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9697   -0.8755   -2.9315 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2073   -1.2591   -3.2161 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7956    0.8546   -2.2918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1484    1.5943   -3.1109 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9013    0.0105   -2.5204 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1871   -0.6980   -1.3223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1214   -1.6950   -1.0102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1559   -2.2878    0.2348 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2575   -1.9056    1.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3366   -0.9314    0.9266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3047   -0.3267   -0.3436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0121    3.4996    1.1447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4934    4.5811   -0.2605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0958    3.5005   -1.7127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6634    3.3536   -0.2991 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9799    1.5615   -0.4764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2503    2.5067   -1.8277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7580    1.4057    1.6534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0847    3.0212    1.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9231    1.7094    1.7495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4004    1.4318   -0.8026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9303    0.5421    0.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7356   -1.5408   -0.3998 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6686    0.2655   -0.7507 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9408   -0.1671    1.7128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8180   -1.7561    2.8273 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6441   -0.3522   -0.5952 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7888   -2.1593   -0.4565 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2881    1.1089    0.5077 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5761    1.3988    1.3834 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8939   -0.5444    2.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9497   -2.7747    1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6861   -3.1035    0.9049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1637   -1.3209   -4.2217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4173   -0.0690   -3.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8128   -1.9760   -1.7926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8761   -3.0590    0.4823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2973   -2.3816    2.1836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6328   -0.6472    1.6906 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  3  2  1  1
  3  4  1  0
  3  5  1  0
  6  3  1  0
  6  7  1  6
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
  8 21  1  0
 21 22  2  0
 21 23  1  0
  6 24  1  0
 24 25  2  0
 24 26  1  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 31 32  2  0
 32  6  1  0
 20 15  1  0
 32 27  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  0
  4 36  1  0
  4 37  1  0
  4 38  1  0
  5 39  1  0
  5 40  1  0
  5 41  1  0
  7 42  1  0
  7 43  1  0
  8 44  1  1
  9 45  1  0
 12 46  1  1
 13 47  1  0
 14 48  1  0
 14 49  1  0
 16 50  1  0
 17 51  1  0
 18 52  1  0
 19 53  1  0
 20 54  1  0
 23 55  1  0
 26 56  1  0
 28 57  1  0
 29 58  1  0
 30 59  1  0
 31 60  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0      -1.126   3.786   0.110  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.023   3.174  -0.684  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.893   2.089  -0.199  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.307   2.398  -0.721  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.866   1.996   1.269  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.452   0.771  -0.865  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.048   0.536  -0.518  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.321  -0.662  -0.981  0.00  0.00           C+0
HETATM    9  N   UNK     0       1.049  -0.495  -0.397  0.00  0.00           N+0
HETATM   10  C   UNK     0       1.524  -1.346   0.626  0.00  0.00           C+0
HETATM   11  O   UNK     0       0.821  -2.289   1.099  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.880  -1.173   1.197  0.00  0.00           C+0
HETATM   13  O   UNK     0       3.168  -2.118   2.168  0.00  0.00           O+0
HETATM   14  C   UNK     0       3.920  -1.189   0.104  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.287  -1.020   0.629  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.841   0.238   0.773  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.128   0.416   1.264  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.887  -0.669   1.622  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.352  -1.930   1.486  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.062  -2.099   0.993  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.164  -0.929  -2.387  0.00  0.00           C+0
HETATM   22  O   UNK     0       0.970  -0.876  -2.932  0.00  0.00           O+0
HETATM   23  O   UNK     0      -1.207  -1.259  -3.216  0.00  0.00           O+0
HETATM   24  C   UNK     0      -2.796   0.855  -2.292  0.00  0.00           C+0
HETATM   25  O   UNK     0      -2.148   1.594  -3.111  0.00  0.00           O+0
HETATM   26  N   UNK     0      -3.901   0.011  -2.520  0.00  0.00           N+0
HETATM   27  C   UNK     0      -4.187  -0.698  -1.322  0.00  0.00           C+0
HETATM   28  C   UNK     0      -5.121  -1.695  -1.010  0.00  0.00           C+0
HETATM   29  C   UNK     0      -5.156  -2.288   0.235  0.00  0.00           C+0
HETATM   30  C   UNK     0      -4.258  -1.906   1.212  0.00  0.00           C+0
HETATM   31  C   UNK     0      -3.337  -0.931   0.927  0.00  0.00           C+0
HETATM   32  C   UNK     0      -3.305  -0.327  -0.344  0.00  0.00           C+0
HETATM   33  H   UNK     0      -1.012   3.500   1.145  0.00  0.00           H+0
HETATM   34  H   UNK     0      -0.493   4.581  -0.261  0.00  0.00           H+0
HETATM   35  H   UNK     0      -2.096   3.501  -1.713  0.00  0.00           H+0
HETATM   36  H   UNK     0      -4.663   3.354  -0.299  0.00  0.00           H+0
HETATM   37  H   UNK     0      -4.980   1.562  -0.476  0.00  0.00           H+0
HETATM   38  H   UNK     0      -4.250   2.507  -1.828  0.00  0.00           H+0
HETATM   39  H   UNK     0      -3.758   1.406   1.653  0.00  0.00           H+0
HETATM   40  H   UNK     0      -3.085   3.021   1.745  0.00  0.00           H+0
HETATM   41  H   UNK     0      -1.923   1.709   1.750  0.00  0.00           H+0
HETATM   42  H   UNK     0      -0.400   1.432  -0.803  0.00  0.00           H+0
HETATM   43  H   UNK     0      -0.930   0.542   0.614  0.00  0.00           H+0
HETATM   44  H   UNK     0      -0.736  -1.541  -0.400  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.669   0.266  -0.751  0.00  0.00           H+0
HETATM   46  H   UNK     0       2.941  -0.167   1.713  0.00  0.00           H+0
HETATM   47  H   UNK     0       3.818  -1.756   2.827  0.00  0.00           H+0
HETATM   48  H   UNK     0       3.644  -0.352  -0.595  0.00  0.00           H+0
HETATM   49  H   UNK     0       3.789  -2.159  -0.457  0.00  0.00           H+0
HETATM   50  H   UNK     0       5.288   1.109   0.508  0.00  0.00           H+0
HETATM   51  H   UNK     0       7.576   1.399   1.383  0.00  0.00           H+0
HETATM   52  H   UNK     0       8.894  -0.544   2.007  0.00  0.00           H+0
HETATM   53  H   UNK     0       7.950  -2.775   1.767  0.00  0.00           H+0
HETATM   54  H   UNK     0       5.686  -3.103   0.905  0.00  0.00           H+0
HETATM   55  H   UNK     0      -1.164  -1.321  -4.222  0.00  0.00           H+0
HETATM   56  H   UNK     0      -4.417  -0.069  -3.432  0.00  0.00           H+0
HETATM   57  H   UNK     0      -5.813  -1.976  -1.793  0.00  0.00           H+0
HETATM   58  H   UNK     0      -5.876  -3.059   0.482  0.00  0.00           H+0
HETATM   59  H   UNK     0      -4.297  -2.382   2.184  0.00  0.00           H+0
HETATM   60  H   UNK     0      -2.633  -0.647   1.691  0.00  0.00           H+0
CONECT    1    2   33   34                                                  
CONECT    2    1    3   35                                                  
CONECT    3    2    4    5    6                                             
CONECT    4    3   36   37   38                                             
CONECT    5    3   39   40   41                                             
CONECT    6    3    7   24   32                                             
CONECT    7    6    8   42   43                                             
CONECT    8    7    9   21   44                                             
CONECT    9    8   10   45                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14   46                                             
CONECT   13   12   47                                                       
CONECT   14   12   15   48   49                                             
CONECT   15   14   16   20                                                  
CONECT   16   15   17   50                                                  
CONECT   17   16   18   51                                                  
CONECT   18   17   19   52                                                  
CONECT   19   18   20   53                                                  
CONECT   20   19   15   54                                                  
CONECT   21    8   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   55                                                       
CONECT   24    6   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   56                                                  
CONECT   27   26   28   32                                                  
CONECT   28   27   29   57                                                  
CONECT   29   28   30   58                                                  
CONECT   30   29   31   59                                                  
CONECT   31   30   32   60                                                  
CONECT   32   31    6   27                                                  
CONECT   33    1                                                            
CONECT   34    1                                                            
CONECT   35    2                                                            
CONECT   36    4                                                            
CONECT   37    4                                                            
CONECT   38    4                                                            
CONECT   39    5                                                            
CONECT   40    5                                                            
CONECT   41    5                                                            
CONECT   42    7                                                            
CONECT   43    7                                                            
CONECT   44    8                                                            
CONECT   45    9                                                            
CONECT   46   12                                                            
CONECT   47   13                                                            
CONECT   48   14                                                            
CONECT   49   14                                                            
CONECT   50   16                                                            
CONECT   51   17                                                            
CONECT   52   18                                                            
CONECT   53   19                                                            
CONECT   54   20                                                            
CONECT   55   23                                                            
CONECT   56   26                                                            
CONECT   57   28                                                            
CONECT   58   29                                                            
CONECT   59   30                                                            
CONECT   60   31                                                            
MASTER        0    0    0    0    0    0    0    0   60    0  124    0
END

RDKit          3D

60 62  0  0  0  0  0  0  0  0999 V2000
   -1.1264    3.7860    0.1104 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0229    3.1740   -0.6842 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8932    2.0890   -0.1990 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3066    2.3983   -0.7209 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8663    1.9962    1.2693 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4522    0.7712   -0.8647 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0478    0.5363   -0.5179 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3211   -0.6616   -0.9805 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0494   -0.4948   -0.3965 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5241   -1.3464    0.6264 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8205   -2.2894    1.0995 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8801   -1.1728    1.1973 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1676   -2.1179    2.1684 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9196   -1.1894    0.1041 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2870   -1.0197    0.6291 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8414    0.2375    0.7732 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1283    0.4156    1.2644 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8872   -0.6688    1.6221 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3520   -1.9295    1.4857 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0621   -2.0995    0.9930 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1637   -0.9294   -2.3874 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9697   -0.8755   -2.9315 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2073   -1.2591   -3.2161 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7956    0.8546   -2.2918 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1484    1.5943   -3.1109 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9013    0.0105   -2.5204 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1871   -0.6980   -1.3223 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1214   -1.6950   -1.0102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1559   -2.2878    0.2348 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2575   -1.9056    1.2124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3366   -0.9314    0.9266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3047   -0.3267   -0.3436 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0121    3.4996    1.1447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4934    4.5811   -0.2605 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0958    3.5005   -1.7127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6634    3.3536   -0.2991 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9799    1.5615   -0.4764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2503    2.5067   -1.8277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7580    1.4057    1.6534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0847    3.0212    1.7451 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9231    1.7094    1.7495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4004    1.4318   -0.8026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9303    0.5421    0.6136 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7356   -1.5408   -0.3998 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6686    0.2655   -0.7507 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9408   -0.1671    1.7128 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8180   -1.7561    2.8273 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6441   -0.3522   -0.5952 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7888   -2.1593   -0.4565 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2881    1.1089    0.5077 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5761    1.3988    1.3834 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8939   -0.5444    2.0067 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9497   -2.7747    1.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6861   -3.1035    0.9049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1637   -1.3209   -4.2217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4173   -0.0690   -3.4324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8128   -1.9760   -1.7926 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8761   -3.0590    0.4823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2973   -2.3816    2.1836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6328   -0.6472    1.6906 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  3  2  1  1
  3  4  1  0
  3  5  1  0
  6  3  1  0
  6  7  1  6
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
  8 21  1  0
 21 22  2  0
 21 23  1  0
  6 24  1  0
 24 25  2  0
 24 26  1  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 31 32  2  0
 32  6  1  0
 20 15  1  0
 32 27  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  0
  4 36  1  0
  4 37  1  0
  4 38  1  0
  5 39  1  0
  5 40  1  0
  5 41  1  0
  7 42  1  0
  7 43  1  0
  8 44  1  1
  9 45  1  0
 12 46  1  1
 13 47  1  0
 14 48  1  0
 14 49  1  0
 16 50  1  0
 17 51  1  0
 18 52  1  0
 19 53  1  0
 20 54  1  0
 23 55  1  0
 26 56  1  0
 28 57  1  0
 29 58  1  0
 30 59  1  0
 31 60  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
9-Deoxy-seco-PF1233 b carboxylate	Generator
(2S)-2-{[(2S)-1,2-dihydroxy-3-phenylpropylidene]amino}-3-[(3S)-2-hydroxy-3-(2-methylbut-3-en-2-yl)-3H-indol-3-yl]propanoate	Generator

Chemical Formula

C₂₅H₂₈N₂O₅

Average Mass

436.5080 Da

Monoisotopic Mass

436.19982 Da

IUPAC Name

(2S)-2-[(2S)-2-hydroxy-3-phenylpropanamido]-3-[(3S)-3-(2-methylbut-3-en-2-yl)-2-oxo-2,3-dihydro-1H-indol-3-yl]propanoic acid

Traditional Name

(2S)-2-[(2S)-2-hydroxy-3-phenylpropanamido]-3-[(3S)-3-(2-methylbut-3-en-2-yl)-2-oxo-1H-indol-3-yl]propanoic acid

CAS Registry Number

Not Available

SMILES

CC(C)(C=C)[C@]1(C[C@H](NC(=O)[C@@H](O)CC2=CC=CC=C2)C(O)=O)C(=O)NC2=CC=CC=C12

InChI Identifier

InChI=1S/C25H28N2O5/c1-4-24(2,3)25(17-12-8-9-13-18(17)27-23(25)32)15-19(22(30)31)26-21(29)20(28)14-16-10-6-5-7-11-16/h4-13,19-20,28H,1,14-15H2,2-3H3,(H,26,29)(H,27,32)(H,30,31)/t19-,20-,25-/m0/s1

InChI Key

QZMIWNADYPPZTF-RLSLOFABSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aspergillus	NPAtlas	28796494

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.42	ALOGPS
logP	3.16	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	3.89	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	115.73 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	121.21 m³·mol⁻¹	ChemAxon
Polarizability	46.18 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

NPAtlas ID

NPA022415

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

62233294

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139589766

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for 9-deoxy-seco-PF1233 B carboxylic acid (NP0016862)

MOL for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)

3D MOL for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)

3D SDF for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)

3D-SDF for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)

PDB for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)

3D PDB for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)

SMILES for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)

INCHI for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)

Structure for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)

3D Structure for NP0016862 (9-deoxy-seco-PF1233 B carboxylic acid)