NP-MRD: Showing NP-Card for Pactamide E (NP0016524)

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Record Information

Version

2.0

Created at

2021-01-06 01:28:32 UTC

Updated at

2021-07-15 17:22:57 UTC

NP-MRD ID

NP0016524

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pactamide E

Provided By

NPAtlas

Description

Pactamide E is found in Streptomyces.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242104153D          

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M  END

     RDKit          3D

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M  END


  Mrv1652306242104153D          

 71 73  0  0  0  0            999 V2000
    2.5720    0.2558    3.3297 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8033    0.4902    2.5205 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6068    0.4070    1.0431 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0924   -0.9809    0.6110 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6412   -0.7272   -0.7657 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6545   -1.6427   -1.3625 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4703   -1.8997   -0.8331 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3393   -2.3838    0.5154 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411   -3.5942    0.9508 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3476   -4.8163    0.2183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8952   -5.0921   -0.1708 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1454   -4.6747    0.3994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9200   -5.6580    0.8010 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7603   -3.4348    0.6377 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9106   -2.2962   -0.2332 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2518   -1.6605   -0.3162 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2454   -0.2172   -0.7688 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1508    0.5782   -0.2698 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9009    0.5157    1.1635 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8651    1.4778    1.2943 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9486    1.4572    2.1712 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0560    2.5146    0.2131 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2891    3.5831   -0.0226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4098    3.9615    1.0335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2676    4.3785   -1.2030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7677    4.0712   -2.3816 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3948    3.3639   -2.8089 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6339    2.0879   -3.0749 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2000    1.0312   -2.2110 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7527    0.7084   -1.0585 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2234    0.7531   -0.8202 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5669    1.3321    0.5128 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1145    2.7538    0.3258 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2311    2.0897   -0.5019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2318    2.3254   -1.1792 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3227    1.1513    3.9635 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7552   -0.5635    4.0409 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6822   -0.0029    2.7457 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1948    1.4853    2.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6034   -0.2350    2.7941 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5835    0.6209    0.5620 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3832   -1.3103    1.3499 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9917   -1.6321    0.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5449   -0.7878   -1.4046 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8583   -2.1667   -2.3206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4287   -1.7049   -1.4741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0897   -1.7621    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1431   -3.6404    1.9021 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -5.5023    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8782   -5.7559   -1.0753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2186   -3.2078    1.5900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6238   -2.6297   -1.2502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2247   -1.4589    0.1151 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7457   -1.6790    0.6794 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9369   -2.2354   -0.9964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2607    0.1878   -0.4760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2911   -0.2561   -1.8826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1974    0.2177   -0.7225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3879   -0.0876    1.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4111    3.4607    1.2677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7489    5.4446   -1.0995 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3400    3.9493   -3.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1694    1.7744   -4.0319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6443    0.3555   -2.4690 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0971    0.3984   -0.2739 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7584    1.3101   -1.5924 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6904    1.4473    1.1825 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3510    3.2782   -0.3123 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1771    3.2737    1.2866 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0578    2.6696   -0.2218 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 22 34  1  0  0  0  0
 34 35  2  0  0  0  0
 32  3  1  0  0  0  0
 31  5  1  0  0  0  0
 34 18  1  0  0  0  0
  1 36  1  0  0  0  0
  1 37  1  0  0  0  0
  1 38  1  0  0  0  0
  2 39  1  0  0  0  0
  2 40  1  0  0  0  0
  3 41  1  6  0  0  0
  4 42  1  0  0  0  0
  4 43  1  0  0  0  0
  5 44  1  6  0  0  0
  6 45  1  0  0  0  0
  7 46  1  0  0  0  0
  8 47  1  0  0  0  0
  9 48  1  0  0  0  0
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 11 50  1  0  0  0  0
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 18 58  1  6  0  0  0
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 24 60  1  0  0  0  0
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 29 65  1  0  0  0  0
 30 66  1  0  0  0  0
 31 67  1  6  0  0  0
 32 68  1  1  0  0  0
 33 69  1  0  0  0  0
 33 70  1  0  0  0  0
 33 71  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0016524

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]O/C1=C2\C(=O)N([H])[C@]([H])(C2=O)C([H])([H])C([H])([H])C([H])([H])N([H])C(=O)\C([H])=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C([H])/[C@]2([H])C([H])([H])[C@]([H])(C([H])([H])C([H])([H])[H])[C@@]([H])(C([H])([H])[H])[C@]2([H])/C([H])=C(/[H])\C(\[H])=C(\[H])/C(/[H])=C\1/[H]

> <INCHI_IDENTIFIER>
InChI=1S/C29H36N2O4/c1-3-21-19-22-13-8-4-7-11-17-26(33)30-18-12-15-24-28(34)27(29(35)31-24)25(32)16-10-6-5-9-14-23(22)20(21)2/h4-11,13-14,16-17,20-24,32H,3,12,15,18-19H2,1-2H3,(H,30,33)(H,31,35)/b6-5-,7-4-,13-8-,14-9-,16-10-,17-11-,27-25-/t20-,21+,22-,23+,24+/m1/s1

> <INCHI_KEY>
NOJRAQWMMMFKJA-UKCQMSJPSA-N

> <FORMULA>
C29H36N2O4

> <MOLECULAR_WEIGHT>
476.617

> <EXACT_MASS>
476.267507647

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
51.94194281171117

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3Z,5Z,7Z,9S,10R,11S,13S,14Z,16Z,18Z,25S)-11-ethyl-2-hydroxy-10-methyl-21,26-diazatricyclo[23.2.1.0^{9,13}]octacosa-1,3,5,7,14,16,18-heptaene-20,27,28-trione

> <ALOGPS_LOGP>
4.68

> <JCHEM_LOGP>
3.9835762443333342

> <ALOGPS_LOGS>
-6.00

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.51898373133748

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.316431422018424

> <JCHEM_PKA_STRONGEST_BASIC>
-0.17019233070390827

> <JCHEM_POLAR_SURFACE_AREA>
95.5

> <JCHEM_REFRACTIVITY>
146.9975

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.72e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3Z,5Z,7Z,9S,10R,11S,13S,14Z,16Z,18Z,25S)-11-ethyl-2-hydroxy-10-methyl-21,26-diazatricyclo[23.2.1.0^{9,13}]octacosa-1,3,5,7,14,16,18-heptaene-20,27,28-trione

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 71 73  0  0  0  0  0  0  0  0999 V2000
    2.5720    0.2558    3.3297 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8033    0.4902    2.5205 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6068    0.4070    1.0431 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0924   -0.9809    0.6110 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6412   -0.7272   -0.7657 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6545   -1.6427   -1.3625 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4703   -1.8997   -0.8331 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3393   -2.3838    0.5154 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411   -3.5942    0.9508 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3476   -4.8163    0.2183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8952   -5.0921   -0.1708 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1454   -4.6747    0.3994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9200   -5.6580    0.8010 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7603   -3.4348    0.6377 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9106   -2.2962   -0.2332 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2518   -1.6605   -0.3162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2454   -0.2172   -0.7688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1508    0.5782   -0.2698 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9009    0.5157    1.1635 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8651    1.4778    1.2943 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9486    1.4572    2.1712 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0560    2.5146    0.2131 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2891    3.5831   -0.0226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4098    3.9615    1.0335 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2676    4.3785   -1.2030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7677    4.0712   -2.3816 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3948    3.3639   -2.8089 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6339    2.0879   -3.0749 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2000    1.0312   -2.2110 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7527    0.7084   -1.0585 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2234    0.7531   -0.8202 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5669    1.3321    0.5128 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1145    2.7538    0.3258 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2311    2.0897   -0.5019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2318    2.3254   -1.1792 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3227    1.1513    3.9635 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7552   -0.5635    4.0409 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6822   -0.0029    2.7457 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1948    1.4853    2.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6034   -0.2350    2.7941 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5835    0.6209    0.5620 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3832   -1.3103    1.3499 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9917   -1.6321    0.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5449   -0.7878   -1.4046 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8583   -2.1667   -2.3206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4287   -1.7049   -1.4741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0897   -1.7621    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1431   -3.6404    1.9021 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -5.5023    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8782   -5.7559   -1.0753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2186   -3.2078    1.5900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6238   -2.6297   -1.2502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2247   -1.4589    0.1151 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7457   -1.6790    0.6794 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9369   -2.2354   -0.9964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2607    0.1878   -0.4760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2911   -0.2561   -1.8826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1974    0.2177   -0.7225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3879   -0.0876    1.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4111    3.4607    1.2677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7489    5.4446   -1.0995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4543    4.5353   -3.1703 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3400    3.9493   -3.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1694    1.7744   -4.0319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6443    0.3555   -2.4690 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0971    0.3984   -0.2739 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7584    1.3101   -1.5924 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6904    1.4473    1.1825 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3510    3.2782   -0.3123 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1771    3.2737    1.2866 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0578    2.6696   -0.2218 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  2  0
 23 24  1  0
 23 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 31 32  1  0
 32 33  1  0
 22 34  1  0
 34 35  2  0
 32  3  1  0
 31  5  1  0
 34 18  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
  2 39  1  0
  2 40  1  0
  3 41  1  6
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  4 43  1  0
  5 44  1  6
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  7 46  1  0
  8 47  1  0
  9 48  1  0
 10 49  1  0
 11 50  1  0
 14 51  1  0
 15 52  1  0
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 17 57  1  0
 18 58  1  6
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 28 64  1  0
 29 65  1  0
 30 66  1  0
 31 67  1  6
 32 68  1  1
 33 69  1  0
 33 70  1  0
 33 71  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  C   UNK     0       2.572   0.256   3.330  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.803   0.490   2.521  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.607   0.407   1.043  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.092  -0.981   0.611  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.641  -0.727  -0.766  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.655  -1.643  -1.363  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.470  -1.900  -0.833  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.339  -2.384   0.515  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.641  -3.594   0.951  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.348  -4.816   0.218  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.895  -5.092  -0.171  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.145  -4.675   0.399  0.00  0.00           C+0
HETATM   13  O   UNK     0      -2.920  -5.658   0.801  0.00  0.00           O+0
HETATM   14  N   UNK     0      -2.760  -3.435   0.638  0.00  0.00           N+0
HETATM   15  C   UNK     0      -2.911  -2.296  -0.233  0.00  0.00           C+0
HETATM   16  C   UNK     0      -4.252  -1.661  -0.316  0.00  0.00           C+0
HETATM   17  C   UNK     0      -4.245  -0.217  -0.769  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.151   0.578  -0.270  0.00  0.00           C+0
HETATM   19  N   UNK     0      -2.901   0.516   1.163  0.00  0.00           N+0
HETATM   20  C   UNK     0      -1.865   1.478   1.294  0.00  0.00           C+0
HETATM   21  O   UNK     0      -0.949   1.457   2.171  0.00  0.00           O+0
HETATM   22  C   UNK     0      -2.056   2.515   0.213  0.00  0.00           C+0
HETATM   23  C   UNK     0      -1.289   3.583  -0.023  0.00  0.00           C+0
HETATM   24  O   UNK     0      -0.410   3.962   1.034  0.00  0.00           O+0
HETATM   25  C   UNK     0      -1.268   4.378  -1.203  0.00  0.00           C+0
HETATM   26  C   UNK     0      -0.768   4.071  -2.382  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.395   3.364  -2.809  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.634   2.088  -3.075  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.200   1.031  -2.211  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.753   0.708  -1.059  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.223   0.753  -0.820  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.567   1.332   0.513  0.00  0.00           C+0
HETATM   33  C   UNK     0       3.115   2.754   0.326  0.00  0.00           C+0
HETATM   34  C   UNK     0      -3.231   2.090  -0.502  0.00  0.00           C+0
HETATM   35  O   UNK     0      -4.232   2.325  -1.179  0.00  0.00           O+0
HETATM   36  H   UNK     0       2.323   1.151   3.963  0.00  0.00           H+0
HETATM   37  H   UNK     0       2.755  -0.564   4.041  0.00  0.00           H+0
HETATM   38  H   UNK     0       1.682  -0.003   2.746  0.00  0.00           H+0
HETATM   39  H   UNK     0       4.195   1.485   2.755  0.00  0.00           H+0
HETATM   40  H   UNK     0       4.603  -0.235   2.794  0.00  0.00           H+0
HETATM   41  H   UNK     0       4.583   0.621   0.562  0.00  0.00           H+0
HETATM   42  H   UNK     0       2.383  -1.310   1.350  0.00  0.00           H+0
HETATM   43  H   UNK     0       3.992  -1.632   0.674  0.00  0.00           H+0
HETATM   44  H   UNK     0       3.545  -0.788  -1.405  0.00  0.00           H+0
HETATM   45  H   UNK     0       1.858  -2.167  -2.321  0.00  0.00           H+0
HETATM   46  H   UNK     0      -0.429  -1.705  -1.474  0.00  0.00           H+0
HETATM   47  H   UNK     0      -0.090  -1.762   1.316  0.00  0.00           H+0
HETATM   48  H   UNK     0       1.143  -3.640   1.902  0.00  0.00           H+0
HETATM   49  H   UNK     0       1.208  -5.502   0.000  0.00  0.00           H+0
HETATM   50  H   UNK     0      -0.878  -5.756  -1.075  0.00  0.00           H+0
HETATM   51  H   UNK     0      -3.219  -3.208   1.590  0.00  0.00           H+0
HETATM   52  H   UNK     0      -2.624  -2.630  -1.250  0.00  0.00           H+0
HETATM   53  H   UNK     0      -2.225  -1.459   0.115  0.00  0.00           H+0
HETATM   54  H   UNK     0      -4.746  -1.679   0.679  0.00  0.00           H+0
HETATM   55  H   UNK     0      -4.937  -2.235  -0.996  0.00  0.00           H+0
HETATM   56  H   UNK     0      -5.261   0.188  -0.476  0.00  0.00           H+0
HETATM   57  H   UNK     0      -4.291  -0.256  -1.883  0.00  0.00           H+0
HETATM   58  H   UNK     0      -2.197   0.218  -0.723  0.00  0.00           H+0
HETATM   59  H   UNK     0      -3.388  -0.088   1.812  0.00  0.00           H+0
HETATM   60  H   UNK     0       0.411   3.461   1.268  0.00  0.00           H+0
HETATM   61  H   UNK     0      -1.749   5.445  -1.099  0.00  0.00           H+0
HETATM   62  H   UNK     0      -1.454   4.535  -3.170  0.00  0.00           H+0
HETATM   63  H   UNK     0       1.340   3.949  -3.023  0.00  0.00           H+0
HETATM   64  H   UNK     0       1.169   1.774  -4.032  0.00  0.00           H+0
HETATM   65  H   UNK     0      -0.644   0.356  -2.469  0.00  0.00           H+0
HETATM   66  H   UNK     0       0.097   0.398  -0.274  0.00  0.00           H+0
HETATM   67  H   UNK     0       2.758   1.310  -1.592  0.00  0.00           H+0
HETATM   68  H   UNK     0       1.690   1.447   1.183  0.00  0.00           H+0
HETATM   69  H   UNK     0       2.351   3.278  -0.312  0.00  0.00           H+0
HETATM   70  H   UNK     0       3.177   3.274   1.287  0.00  0.00           H+0
HETATM   71  H   UNK     0       4.058   2.670  -0.222  0.00  0.00           H+0
CONECT    1    2   36   37   38                                             
CONECT    2    1    3   39   40                                             
CONECT    3    2    4   32   41                                             
CONECT    4    3    5   42   43                                             
CONECT    5    4    6   31   44                                             
CONECT    6    5    7   45                                                  
CONECT    7    6    8   46                                                  
CONECT    8    7    9   47                                                  
CONECT    9    8   10   48                                                  
CONECT   10    9   11   49                                                  
CONECT   11   10   12   50                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   51                                                  
CONECT   15   14   16   52   53                                             
CONECT   16   15   17   54   55                                             
CONECT   17   16   18   56   57                                             
CONECT   18   17   19   34   58                                             
CONECT   19   18   20   59                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   34                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23   60                                                       
CONECT   25   23   26   61                                                  
CONECT   26   25   27   62                                                  
CONECT   27   26   28   63                                                  
CONECT   28   27   29   64                                                  
CONECT   29   28   30   65                                                  
CONECT   30   29   31   66                                                  
CONECT   31   30   32    5   67                                             
CONECT   32   31   33    3   68                                             
CONECT   33   32   69   70   71                                             
CONECT   34   22   35   18                                                  
CONECT   35   34                                                            
CONECT   36    1                                                            
CONECT   37    1                                                            
CONECT   38    1                                                            
CONECT   39    2                                                            
CONECT   40    2                                                            
CONECT   41    3                                                            
CONECT   42    4                                                            
CONECT   43    4                                                            
CONECT   44    5                                                            
CONECT   45    6                                                            
CONECT   46    7                                                            
CONECT   47    8                                                            
CONECT   48    9                                                            
CONECT   49   10                                                            
CONECT   50   11                                                            
CONECT   51   14                                                            
CONECT   52   15                                                            
CONECT   53   15                                                            
CONECT   54   16                                                            
CONECT   55   16                                                            
CONECT   56   17                                                            
CONECT   57   17                                                            
CONECT   58   18                                                            
CONECT   59   19                                                            
CONECT   60   24                                                            
CONECT   61   25                                                            
CONECT   62   26                                                            
CONECT   63   27                                                            
CONECT   64   28                                                            
CONECT   65   29                                                            
CONECT   66   30                                                            
CONECT   67   31                                                            
CONECT   68   32                                                            
CONECT   69   33                                                            
CONECT   70   33                                                            
CONECT   71   33                                                            
MASTER        0    0    0    0    0    0    0    0   71    0  146    0
END

RDKit          3D

71 73  0  0  0  0  0  0  0  0999 V2000
    2.5720    0.2558    3.3297 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8033    0.4902    2.5205 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6068    0.4070    1.0431 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0924   -0.9809    0.6110 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6412   -0.7272   -0.7657 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6545   -1.6427   -1.3625 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4703   -1.8997   -0.8331 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3393   -2.3838    0.5154 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411   -3.5942    0.9508 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3476   -4.8163    0.2183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8952   -5.0921   -0.1708 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1454   -4.6747    0.3994 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9200   -5.6580    0.8010 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7603   -3.4348    0.6377 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9106   -2.2962   -0.2332 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2518   -1.6605   -0.3162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2454   -0.2172   -0.7688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1508    0.5782   -0.2698 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9009    0.5157    1.1635 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8651    1.4778    1.2943 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9486    1.4572    2.1712 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0560    2.5146    0.2131 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2891    3.5831   -0.0226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4098    3.9615    1.0335 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3948    3.3639   -2.8089 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6339    2.0879   -3.0749 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2000    1.0312   -2.2110 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7527    0.7084   -1.0585 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.5669    1.3321    0.5128 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1145    2.7538    0.3258 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2311    2.0897   -0.5019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2318    2.3254   -1.1792 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3227    1.1513    3.9635 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7552   -0.5635    4.0409 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6822   -0.0029    2.7457 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1948    1.4853    2.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6034   -0.2350    2.7941 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5835    0.6209    0.5620 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3832   -1.3103    1.3499 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9917   -1.6321    0.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5449   -0.7878   -1.4046 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8583   -2.1667   -2.3206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4287   -1.7049   -1.4741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0897   -1.7621    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1431   -3.6404    1.9021 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -5.5023    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8782   -5.7559   -1.0753 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.6238   -2.6297   -1.2502 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.9369   -2.2354   -0.9964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2607    0.1878   -0.4760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2911   -0.2561   -1.8826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1974    0.2177   -0.7225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3879   -0.0876    1.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4111    3.4607    1.2677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7489    5.4446   -1.0995 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.3400    3.9493   -3.0226 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1694    1.7744   -4.0319 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6443    0.3555   -2.4690 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0971    0.3984   -0.2739 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7584    1.3101   -1.5924 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6904    1.4473    1.1825 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.1771    3.2737    1.2866 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0578    2.6696   -0.2218 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
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 18 19  1  0
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 20 21  2  0
 20 22  1  0
 22 23  2  0
 23 24  1  0
 23 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 31 32  1  0
 32 33  1  0
 22 34  1  0
 34 35  2  0
 32  3  1  0
 31  5  1  0
 34 18  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
  2 39  1  0
  2 40  1  0
  3 41  1  6
  4 42  1  0
  4 43  1  0
  5 44  1  6
  6 45  1  0
  7 46  1  0
  8 47  1  0
  9 48  1  0
 10 49  1  0
 11 50  1  0
 14 51  1  0
 15 52  1  0
 15 53  1  0
 16 54  1  0
 16 55  1  0
 17 56  1  0
 17 57  1  0
 18 58  1  6
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 24 60  1  0
 25 61  1  0
 26 62  1  0
 27 63  1  0
 28 64  1  0
 29 65  1  0
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 31 67  1  6
 32 68  1  1
 33 69  1  0
 33 70  1  0
 33 71  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Not Available

Chemical Formula

C₂₉H₃₆N₂O₄

Average Mass

476.6170 Da

Monoisotopic Mass

476.26751 Da

IUPAC Name

(3Z,5Z,7Z,9S,10R,11S,13S,14Z,16Z,18Z,25S)-11-ethyl-2-hydroxy-10-methyl-21,26-diazatricyclo[23.2.1.0^{9,13}]octacosa-1,3,5,7,14,16,18-heptaene-20,27,28-trione

Traditional Name

(3Z,5Z,7Z,9S,10R,11S,13S,14Z,16Z,18Z,25S)-11-ethyl-2-hydroxy-10-methyl-21,26-diazatricyclo[23.2.1.0^{9,13}]octacosa-1,3,5,7,14,16,18-heptaene-20,27,28-trione

CAS Registry Number

Not Available

SMILES

[H]O/C1=C2\C(=O)N([H])[C@]([H])(C2=O)C([H])([H])C([H])([H])C([H])([H])N([H])C(=O)\C([H])=C(\[H])/C(/[H])=C(/[H])\C(\[H])=C([H])/[C@]2([H])C([H])([H])[C@]([H])(C([H])([H])C([H])([H])[H])[C@@]([H])(C([H])([H])[H])[C@]2([H])/C([H])=C(/[H])\C(\[H])=C(\[H])/C(/[H])=C\1/[H]

InChI Identifier

InChI=1S/C29H36N2O4/c1-3-21-19-22-13-8-4-7-11-17-26(33)30-18-12-15-24-28(34)27(29(35)31-24)25(32)16-10-6-5-9-14-23(22)20(21)2/h4-11,13-14,16-17,20-24,32H,3,12,15,18-19H2,1-2H3,(H,30,33)(H,31,35)/b6-5-,7-4-,13-8-,14-9-,16-10-,17-11-,27-25-/t20-,21+,22-,23+,24+/m1/s1

InChI Key

NOJRAQWMMMFKJA-UKCQMSJPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces	NPAtlas	28451290

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.68	ALOGPS
logP	3.98	ChemAxon
logS	-6	ALOGPS
pKa (Strongest Acidic)	5.32	ChemAxon
pKa (Strongest Basic)	-0.17	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	95.5 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	147 m³·mol⁻¹	ChemAxon
Polarizability	51.94 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Showing NP-Card for Pactamide E (NP0016524)

MOL for NP0016524 (Pactamide E)

3D MOL for NP0016524 (Pactamide E)

3D SDF for NP0016524 (Pactamide E)

3D-SDF for NP0016524 (Pactamide E)

PDB for NP0016524 (Pactamide E)

3D PDB for NP0016524 (Pactamide E)

SMILES for NP0016524 (Pactamide E)

INCHI for NP0016524 (Pactamide E)

Structure for NP0016524 (Pactamide E)

3D Structure for NP0016524 (Pactamide E)